Clone Sequence Records
BS06895.3prime Sequence
663 bp (662 high quality bases) assembled on 2005-12-04
> BS06895.3prime
ATGGTCTAGAAAGCTTCTACTGGCTGTGCAGCAGCTTGTTGAAGTCCGCG
TACGCCGACTCCAGGTCGAAGAGGAACTGGCGGACCTGGCCCTCGCTCAA
CTCGTCGGAGGCCTGCATCTCGTTCAGGCTGCCCAGCCACTTCTCCACCT
TCAGCTTGGCGTCGAAGTCCTCGGGAATGAGGGACAGGCGATTCATGTTG
TCAGCCAGGTCTTTGACGTCCGGCTGTAGGGCGTCCATGGTGTTGATCTG
CAGGCGTAGCTTGTCCATGATTGTGATGAACAGCGACACGATCTCGGCGA
TGCATTTGGAGGTGTTGCCCTTATCGTCGCGTATGGTGATGGGTCGGTCC
TCGCGGATCCGCTCCAGCGCAGCAGGGCAGTCCAGCCGGAATTTCTTAAC
GAACGTCTCCACCGAGGGGAATTCGTCGCACTGCACCTGCTTAAAGGCCA
CCTTGTACTGCACCAGGTATTTGGAGCAGGCGGCCGTGTATTCCTGCGGC
GTAATGCAGTCGCGGATGTAGGCCTTCTCCAGCTGCTGGATGGTGTTGAT
GATTGCGTATAGATCGGCCATGTTGTCGTACTTCTCGCGCTCGCGGGCGT
TACGGAAGAGCTTCACCTCCTCGTACAGCTCGGGACTTTGTTCCTGCATG
TCGACTGATAACT
BS06895.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12770-PA | 633 | Vps28-RA | 1..633 | 649..17 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-RB | 1173 | CG12770-RB | 88..724 | 653..17 | 3170 | 99.8 | Minus |
| Vps28-RA | 805 | CG12770-RA | 88..724 | 653..17 | 3170 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8079318..8079954 | 17..653 | 3170 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:29:51 has no hits.
BS06895.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:29 Download gff for
BS06895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-PA | 1..633 | 17..649 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:27 Download gff for
BS06895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12770-PA | 1..633 | 17..649 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:25 Download gff for
BS06895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 84..729 | 9..659 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:45 Download gff for
BS06895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 84..729 | 9..659 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:45 Download gff for
BS06895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8079313..8079958 | 9..659 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:25 Download gff for
BS06895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3966818..3967463 | 9..659 | 98 | | Plus |
BS06895.5prime Sequence
663 bp (662 high quality bases) assembled on 2005-12-04
> BS06895.5prime
GAAGTTATCAGTCGACATGCAGGAACAAAGTCCCGAGCTGTACGAGGAGG
TGAAGCTCTTCCGTAACGCCCGCGAGCGCGAGAAGTACGACAACATGGCC
GATCTATACGCAATCATCAACACCATCCAGCAGCTGGAGAAGGCCTACAT
CCGCGACTGCATTACGCCGCAGGAATACACGGCCGCCTGCTCCAAATACC
TGGTGCAGTACAAGGTGGCCTTTAAGCAGGTGCAGTGCGACGAATTCCCC
TCGGTGGAGACGTTCGTTAAGAAATTCCGGCTGGACTGCCCTGCTGCGCT
GGAGCGGATCCGCGAGGACCGACCCATCACCATACGCGACGATAAGGGCA
ACACCTCCAAATGCATCGCCGAGATCGTGTCGCTGTTCATCACAATCATG
GACAAGCTACGCCTGCAGATCAACACCATGGACGCCCTACAGCCGGACGT
CAAAGACCTGGCTGACAACATGAATCGCCTGTCCCTCATTCCCGAGGACT
TCGACGCCAAGCTGAAGGTGGAGAAGTGGCTGGGCAGCCTGAACGAGATG
CAGGCCTCCGACGAGTTGAGCGAGGGCCAGGTCCGCCAGTTCCTCTTCGA
CCTGGAGTCGGCGTACGCGGACTTCAACAAGCTGCTGCACAGCCAGTAGA
AGCTTTCTAGACC
BS06895.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12770-PA | 633 | Vps28-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-RB | 1173 | CG12770-RB | 88..724 | 13..649 | 3170 | 99.8 | Plus |
| Vps28-RA | 805 | CG12770-RA | 88..724 | 13..649 | 3170 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8079318..8079954 | 649..13 | 3170 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:52:30 has no hits.
BS06895.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:30 Download gff for
BS06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:28 Download gff for
BS06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12770-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:56 Download gff for
BS06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 84..729 | 7..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:57 Download gff for
BS06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 84..729 | 7..657 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:57 Download gff for
BS06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8079313..8079958 | 7..657 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:56 Download gff for
BS06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3966818..3967463 | 7..657 | 98 | | Minus |
BS06895.complete Sequence
665 bp (665 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635661
> BS06895.complete
GAAGTTATCAGTCGACATGCAGGAACAAAGTCCCGAGCTGTACGAGGAGG
TGAAGCTCTTCCGTAACGCCCGCGAGCGCGAGAAGTACGACAACATGGCC
GATCTATACGCAATCATCAACACCATCCAGCAGCTGGAGAAGGCCTACAT
CCGCGACTGCATTACGCCGCAGGAATACACGGCCGCCTGCTCCAAATACC
TGGTGCAGTACAAGGTGGCCTTTAAGCAGGTGCAGTGCGACGAATTCCCC
TCGGTGGAGACGTTCGTTAAGAAATTCCGGCTGGACTGCCCTGCTGCGCT
GGAGCGGATCCGCGAGGACCGACCCATCACCATACGCGACGATAAGGGCA
ACACCTCCAAATGCATCGCCGAGATCGTGTCGCTGTTCATCACAATCATG
GACAAGCTACGCCTGCAGATCAACACCATGGACGCCCTACAGCCGGACGT
CAAAGACCTGGCTGACAACATGAATCGCCTGTCCCTCATTCCCGAGGACT
TCGACGCCAAGCTGAAGGTGGAGAAGTGGCTGGGCAGCCTGAACGAGATG
CAGGCCTCCGACGAGTTGAGCGAGGGCCAGGTCCGCCAGTTCCTCTTCGA
CCTGGAGTCGGCGTACGCGGACTTCAACAAGCTGCTGCACAGCCAGTAGA
AGCTTTCTAGACCAT
BS06895.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-RB | 633 | CG12770-PB | 1..633 | 17..649 | 3165 | 100 | Plus |
| Vps28-RA | 633 | CG12770-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-RB | 1173 | CG12770-RB | 88..724 | 13..649 | 3170 | 99.8 | Plus |
| Vps28-RA | 805 | CG12770-RA | 88..724 | 13..649 | 3170 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8079318..8079954 | 649..13 | 3170 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:28 has no hits.
BS06895.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:57 Download gff for
BS06895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:37 Download gff for
BS06895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 78..723 | 7..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:08 Download gff for
BS06895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 92..724 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:57 Download gff for
BS06895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 78..723 | 7..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:50 Download gff for
BS06895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 92..724 | 17..649 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:50 Download gff for
BS06895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8079318..8079950 | 17..649 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:08 Download gff for
BS06895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3966823..3967455 | 17..649 | 100 | | Minus |
BS06895.pep Sequence
Translation from 16 to 648
> BS06895.pep
MQEQSPELYEEVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCIT
PQEYTAACSKYLVQYKVAFKQVQCDEFPSVETFVKKFRLDCPAALERIRE
DRPITIRDDKGNTSKCIAEIVSLFITIMDKLRLQINTMDALQPDVKDLAD
NMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDELSEGQVRQFLFDLESAY
ADFNKLLHSQ*
BS06895.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-PB | 210 | CG12770-PB | 1..210 | 1..210 | 1076 | 100 | Plus |
| Vps28-PA | 210 | CG12770-PA | 1..210 | 1..210 | 1076 | 100 | Plus |
