Clone Sequence Records
BS06903.5prime Sequence
711 bp (710 high quality bases) assembled on 2005-12-04
> BS06903.5prime
GAAGTTATCAGTCGACATGTCCGACGAGACGAACGCCGCGGTGTGGGATG
ACTCCTTGCTGGTGAAGACGTACGACGAGTCGGTGGGACTGGCCCGCGAA
GCTTTGGCCCGCCGCCTCGCCGATTCCACCAACAAGCGCGAGGAGGAGAA
CGCTGCCGCAGCTGAAGAAGAAGCTGGCGAGATCTCGGCCACTGGTGGGG
CTACCAGCCCGGAACCAGTATCCTTCAAAGTAGGCGACTACGCCAGGGCC
ACCTACGTGGATGGTGTGGACTACGAGGGCGCTGTGGTGTCTATTAACGA
GGAGAAGGGCACCTGCGTACTCCGCTATTTGGGCTATGAGAACGAGCAGG
AGGTGTTGCTCGTGGACCTCCTGCCGTCCTGGGGCAAGCGTGTGCGTCGC
GAGCAGTTCCTTATCGCCAAGAAGGATGAGGACGAGCAGTTGAGCCGCCC
TAAGGCATCCGCTGGTAGTCATTCAAAGACTCCCAAGTCATCCAGAAGGA
GTAGGATCTCTGGCGGACTGGTTATGCCGCCCATGCCACCAGTACCGCCC
ATGATTGTCGGACAAGGGGACGGCGCCGAACAGGACTTCGTGGCCATGCT
CACCGCCTGGTACATGTCCGGCTATTATACGGGCCTCTACCAGGGAAAGA
AAGAAGCCAGCACCACTAGCGGAAAGAAAAAGACACCCAAGAAGTAAAAG
CTTTCTAGACC
BS06903.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16725-PA | 681 | Smn-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smn-RB | 1086 | CG16725-RB | 298..982 | 13..697 | 3410 | 99.9 | Plus |
| Smn-RA | 879 | CG16725-RA | 91..775 | 13..697 | 3410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16580502..16581186 | 697..13 | 3410 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:20:32 has no hits.
BS06903.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:39 Download gff for
BS06903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:41 Download gff for
BS06903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16725-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:23 Download gff for
BS06903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 88..775 | 10..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:54 Download gff for
BS06903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 88..775 | 10..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:54 Download gff for
BS06903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16580502..16581189 | 10..697 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:23 Download gff for
BS06903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16573602..16574289 | 10..697 | 99 | | Minus |
BS06903.3prime Sequence
711 bp (710 high quality bases) assembled on 2005-12-04
> BS06903.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGGGTGTCTTTTTCTTTCCGCTAGTG
GTGCTGGCTTCTTTCTTTCCCTGGTAGAGGCCCGTATAATAGCCGGACAT
GTACCAGGCGGTGAGCATGGCCACGAAGTCCTGTTCGGCGCCGTCCCCTT
GTCCGACAATCATGGGCGGTACTGGTGGCATGGGCGGCATAACCAGTCCG
CCAGAGATCCTACTCCTTCTGGATGACTTGGGAGTCTTTGAATGACTACC
AGCGGATGCCTTAGGGCGGCTCAACTGCTCGTCCTCATCCTTCTTGGCGA
TAAGGAACTGCTCGCGACGCACACGCTTGCCCCAGGACGGCAGGAGGTCC
ACGAGCAACACCTCCTGCTCGTTCTCATAGCCCAAATAGCGGAGTACGCA
GGTGCCCTTCTCCTCGTTAATAGACACCACAGCGCCCTCGTAGTCCACAC
CATCCACGTAGGTGGCCCTGGCGTAGTCGCCTACTTTGAAGGATACTGGT
TCCGGGCTGGTAGCCCCACCAGTGGCCGAGATCTCGCCAGCTTCTTCTTC
AGCTGCGGCAGCGTTCTCCTCCTCGCGCTTGTTGGTGGAATCGGCGAGGC
GGCGGGCCAAAGCTTCGCGGGCCAGTCCCACCGACTCGTCGTACGTCTTC
ACCAGCAAGGAGTCATCCCACACCGCGGCGTTCGTCTCGTCGGACATGTC
GACTGATAACT
BS06903.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16725-PA | 681 | Smn-RA | 1..681 | 697..17 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smn-RB | 1086 | CG16725-RB | 298..982 | 701..17 | 3410 | 99.9 | Minus |
| Smn-RA | 879 | CG16725-RA | 91..775 | 701..17 | 3410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16580502..16581186 | 17..701 | 3410 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:24:47 has no hits.
BS06903.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:38 Download gff for
BS06903.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-PA | 1..681 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:39 Download gff for
BS06903.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16725-PA | 1..681 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:04:00 Download gff for
BS06903.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 88..775 | 17..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:15:30 Download gff for
BS06903.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 88..775 | 17..704 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:15:30 Download gff for
BS06903.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16580502..16581189 | 17..704 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:04:00 Download gff for
BS06903.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16573602..16574289 | 17..704 | 99 | | Plus |
BS06903.complete Sequence
713 bp (713 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635662
> BS06903.complete
GAAGTTATCAGTCGACATGTCCGACGAGACGAACGCCGCGGTGTGGGATG
ACTCCTTGCTGGTGAAGACGTACGACGAGTCGGTGGGACTGGCCCGCGAA
GCTTTGGCCCGCCGCCTCGCCGATTCCACCAACAAGCGCGAGGAGGAGAA
CGCTGCCGCAGCTGAAGAAGAAGCTGGCGAGATCTCGGCCACTGGTGGGG
CTACCAGCCCGGAACCAGTATCCTTCAAAGTAGGCGACTACGCCAGGGCC
ACCTACGTGGATGGTGTGGACTACGAGGGCGCTGTGGTGTCTATTAACGA
GGAGAAGGGCACCTGCGTACTCCGCTATTTGGGCTATGAGAACGAGCAGG
AGGTGTTGCTCGTGGACCTCCTGCCGTCCTGGGGCAAGCGTGTGCGTCGC
GAGCAGTTCCTTATCGCCAAGAAGGATGAGGACGAGCAGTTGAGCCGCCC
TAAGGCATCCGCTGGTAGTCATTCAAAGACTCCCAAGTCATCCAGAAGGA
GTAGGATCTCTGGCGGACTGGTTATGCCGCCCATGCCACCAGTACCGCCC
ATGATTGTCGGACAAGGGGACGGCGCCGAACAGGACTTCGTGGCCATGCT
CACCGCCTGGTACATGTCCGGCTATTATACGGGCCTCTACCAGGGAAAGA
AAGAAGCCAGCACCACTAGCGGAAAGAAAAAGACACCCAAGAAGTAAAAG
CTTTCTAGACCAT
BS06903.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smn-RB | 681 | CG16725-PB | 1..681 | 17..697 | 3405 | 100 | Plus |
| Smn-RA | 681 | CG16725-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smn-RB | 1086 | CG16725-RB | 298..982 | 13..697 | 3410 | 99.9 | Plus |
| Smn-RA | 879 | CG16725-RA | 91..775 | 13..697 | 3410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16580502..16581186 | 697..13 | 3410 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:03:52 has no hits.
BS06903.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:44 Download gff for
BS06903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:21 Download gff for
BS06903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 52..739 | 10..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:39 Download gff for
BS06903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 95..773 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:44 Download gff for
BS06903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 52..739 | 10..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:28 Download gff for
BS06903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 95..773 | 17..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:28 Download gff for
BS06903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16580504..16581182 | 17..695 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:39 Download gff for
BS06903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16573604..16574282 | 17..695 | 100 | | Minus |
BS06903.pep Sequence
Translation from 16 to 696
> BS06903.pep
MSDETNAAVWDDSLLVKTYDESVGLAREALARRLADSTNKREEENAAAAE
EEAGEISATGGATSPEPVSFKVGDYARATYVDGVDYEGAVVSINEEKGTC
VLRYLGYENEQEVLLVDLLPSWGKRVRREQFLIAKKDEDEQLSRPKASAG
SHSKTPKSSRRSRISGGLVMPPMPPVPPMIVGQGDGAEQDFVAMLTAWYM
SGYYTGLYQGKKEASTTSGKKKTPKK*
BS06903.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smn-PB | 226 | CG16725-PB | 1..226 | 1..226 | 1159 | 100 | Plus |
| Smn-PA | 226 | CG16725-PA | 1..226 | 1..226 | 1159 | 100 | Plus |
