Clone Sequence Records
BS06904.5prime Sequence
872 bp (477 high quality bases) assembled on 2005-12-04
> BS06904.5prime
GAAGTTATCAGTCGACATGGTGGGCACAACACTGAAAATGCGTGGCGATG
AGAACGCTTCGGAGAACTTCAAGCAAGTGCAATTGAAGAAATTGACGGTT
CCTTCCATGGAGGCAACAACAAAACGCGCGGCCTTGGGCGATTTGCAGAA
TCGCGGCATAAGTCGTCCCATCGCAGCGAAGGATGCGGCACAGAAAGACT
CCAAGGATCTCAAGCTCACAGACGCCCTGCGCAATGCCAAAGCTCGGGTG
GACAGCCACTGGAAGAAACAGCCACTGGGCAGCACCAATGGCAATGGCAA
TGGCGCCGTTCCGCCCAAGGTCAACGAGGGGGGCGTGTCGGCGTTTTTGC
GTTCGAATTCGGTGCGCAATCGCGTTCCGACCAAGACCACTGTAGAACCC
ACTAAAGTTACAGTCAAGTCCAGTTCTTCCGAGAACGTGAACGAGCCCAC
CTTAAAGCGCGAGGACAGCAATCTGTCGAAGAAGTCGCTGACCAAACTGC
GTGCCGCTTTGGCCAAACCCGTGATGGGAGTTTCAGGAATTCGACGGGAA
CCAGTAACTGTTTCCCGCAAAGAGGCAGAGACCAAGAAGGAACTGGCAGA
AACCAAGAAGGACTCACTGGAAGTGAAAAAGGATGCGACCAGGATGCCCC
TTATTAGGGGCAACAGTGCAGTCACTACGACCACATCTACGATGCCCACC
ACCATGTCCCTTTCCAGCAAGCGCTTGGCTGGAATCGAGGACATTGATGC
CAATGACAAGGAGAACCTGGTACTGGTCTCCGAATATGTAAACGACATCT
ACGACTACTTGTATCANGTGGAGCTGGAGCAGCCCATTCACAAGGATCAC
CTGGCCGGACAGAAAGAGGTGT
BS06904.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3510-PD | 1593 | CycB-RD | 1..856 | 17..872 | 4186 | 99.5 | Plus |
| CG3510-PA | 1593 | CycB-RA | 1..856 | 17..872 | 4186 | 99.5 | Plus |
| CG3510-PB | 1575 | CycB-RB | 17..838 | 51..872 | 4016 | 99.5 | Plus |
| CG3510-PC | 1503 | CycB-RC | 1..766 | 107..872 | 3736 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-RA | 2633 | CG3510-RA | 268..1123 | 17..872 | 4224 | 99.5 | Plus |
| CycB-RE | 2627 | CG3510-RE | 268..1117 | 17..872 | 4124 | 98.8 | Plus |
| CycB-RC | 2548 | CG3510-RC | 217..1038 | 51..872 | 4054 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22805100..22805568 | 872..404 | 2289 | 99.1 | Minus |
| 2R | 25286936 | 2R | 22805667..22805875 | 407..199 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 22805940..22806087 | 198..51 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:38:22 has no hits.
BS06904.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:40 Download gff for
BS06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:42 Download gff for
BS06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3510-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:08:00 Download gff for
BS06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 260..1123 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:27 Download gff for
BS06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 260..1123 | 9..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:27 Download gff for
BS06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22805100..22805564 | 408..872 | 99 | <- | Minus |
| 2R | 22805667..22805875 | 199..407 | 100 | <- | Minus |
| 2R | 22805940..22806085 | 53..198 | 100 | <- | Minus |
| 2R | 22806646..22806689 | 9..52 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:08:00 Download gff for
BS06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18692605..18693069 | 408..872 | 99 | <- | Minus |
| arm_2R | 18693172..18693380 | 199..407 | 100 | <- | Minus |
| arm_2R | 18693445..18693590 | 53..198 | 100 | <- | Minus |
| arm_2R | 18694151..18694194 | 9..52 | 93 | | Minus |
BS06904.complete Sequence
1625 bp assembled on 2008-08-14
GenBank Submission: FJ635663
> BS06904.complete
GAAGTTATCAGTCGACATGGTGGGCACAACACTGAAAATGCGTGGCGATG
AGAACGCTTCGGAGAACTTCAAGCAAGTGCAATTGAAGAAATTGACGGTT
CCTTCCATGGAGGCAACAACAAAACGCGCGGCCTTGGGCGATTTGCAGAA
TCGCGGCATAAGTCGTCCCATCGCAGCGAAGGATGCGGCACAGAAAGACT
CCAAGGATCTCAAGCTCACAGACGCCCTGCGCAATGCCAAAGCTCGGGTG
GACAGCCACTGGAAGAAACAGCCACTGGGCAGCACCAATGGCAATGGCAA
TGGCGCCGTTCCGCCCAAGGTCAACGAGGGGGGCGTGTCGGCGTTTTTGC
GTTCGAATTCGGTGCGCAATCGCGTTCCGACCAAGACCACTGTAGAACCC
ACTAAAGTTACAGTCAAGTCCAGTTCTTCCGAGAACGTGAACGAGCCCAC
CTTAAAGCGCGAGGACAGCAATCTGTCGAAGAAGTCGCTGACCAAACTGC
GTGCCGCTTTGGCCAAACCCGTGATGGGAGTTTCAGGAATTCGACGGGAA
CCAGTAGCTGTTTCCCGCAAAGAGGCAGAGACCAAGAAGGAACTGCCAGA
AACCAAGAAGGACTCACTGGAAGTGAAAAAGGATGCGACCAGGATGCCCC
TTATTAGGGGCAACAGTGCAGTCACTACGACCACATCTACGATGCCCACC
ACCATGTCCCTTTCCAGCAAGCGCTTGGCTGGAATCGAGGACATTGATGC
CAATGACAAGGAGAACCTGGTACTGGTCTCCGAATATGTAAACGACATCT
ACGACTACTTGTATCAGGTGGAGCTGGAGCAGCCCATTCACAAGGATCAC
CTGGCCGGACAGAAGGAGGTGTCCCACAAGATGCGAGCCGTGCTGATCGA
TTGGATCAACGAAGTCCACCTGCAGTTCCATCTGGCTGCAGAGACCTTCC
AGCTGGCGGTGGCTATCATTGATCGCTACCTGCAGGTGGTCAAGGACACC
AAACGCACGTACTTGCAATTGGTGGGAGTGACAGCACTCTTCATAGCCAC
CAAGTACGAGGAGCTGTTCCCGCCGGCAATCGGAGATTTCGTCTTCATCA
CGGACGACACCTACACTGCCCGGCAGATCCGACAGATGGAGCTGCAAATC
TTCAAGGCCATCGACTGTAATCTGTCGCGTCCGCTGCCGATTCACTTCCT
TCGACGCTACTCGAAGGCTGCTGGCGCCGAGGACGAGCACCATACGATGT
CCAAGTACTTCATCGAGTTAGCTTCCGTGGACTACGAAATGGCCACTTAC
AGGCCATCGGAGATTGCAGCTGCCTCACTGTTCCTGTCGCTGCACTTGCT
CAATGGAAACCACCGGGCCGGTACAGGATTCAACGACCGTCACTGGACGC
CCACTCTGACCTTCTACTCGCGATACTCGGCCGCGCACTTGCGTCCGATT
ACCCGGCTGATCGCGAAACTGGCCCGGGACGCTCCTCAGGCCAAGCTGAA
GGCCATCTACAACAAGTACCAGGGCAGCAAGTTCCAGAAGATCGCGCTGC
GAACGGAGCTGACCGGTGCGCTGATGGACTCGATTGTGGGCCAGAGCCAG
AGGAAATAGAAGCTTTCTAGACCAT
BS06904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-RA | 1593 | CG3510-PA | 1..1593 | 17..1609 | 7965 | 100 | Plus |
| CycB-RE | 1587 | CG3510-PE | 1..1587 | 17..1609 | 7840 | 99.6 | Plus |
| CycB-RB | 1575 | CG3510-PB | 17..1575 | 51..1609 | 7795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-RA | 2633 | CG3510-RA | 268..1860 | 17..1609 | 7965 | 100 | Plus |
| CycB-RE | 2627 | CG3510-RE | 268..1854 | 17..1609 | 7840 | 99.6 | Plus |
| CycB-RC | 2548 | CG3510-RC | 217..1775 | 51..1609 | 7795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22804660..22805568 | 1312..404 | 4545 | 100 | Minus |
| 2R | 25286936 | 2R | 22804294..22804592 | 1609..1311 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 22805667..22805875 | 407..199 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 22805940..22806087 | 198..51 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:44:21 has no hits.
BS06904.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:41 Download gff for
BS06904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 297..1904 | 9..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:35 Download gff for
BS06904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 268..1854 | 17..1603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:33 Download gff for
BS06904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 305..1891 | 17..1603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:44 Download gff for
BS06904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 268..1854 | 17..1603 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:44 Download gff for
BS06904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22805940..22806085 | 53..198 | 100 | <- | Minus |
| 2R | 22806646..22806681 | 17..52 | 100 | | Minus |
| 2R | 22804300..22804590 | 1313..1603 | 100 | <- | Minus |
| 2R | 22804660..22805564 | 408..1312 | 100 | <- | Minus |
| 2R | 22805667..22805875 | 199..407 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:35 Download gff for
BS06904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18691805..18692095 | 1313..1603 | 100 | <- | Minus |
| arm_2R | 18692165..18693069 | 408..1312 | 100 | <- | Minus |
| arm_2R | 18693172..18693380 | 199..407 | 100 | <- | Minus |
| arm_2R | 18693445..18693590 | 53..198 | 100 | <- | Minus |
| arm_2R | 18694151..18694186 | 17..52 | 100 | | Minus |
BS06904.pep Sequence
Translation from 16 to 1608
> BS06904.pep
MVGTTLKMRGDENASENFKQVQLKKLTVPSMEATTKRAALGDLQNRGISR
PIAAKDAAQKDSKDLKLTDALRNAKARVDSHWKKQPLGSTNGNGNGAVPP
KVNEGGVSAFLRSNSVRNRVPTKTTVEPTKVTVKSSSSENVNEPTLKRED
SNLSKKSLTKLRAALAKPVMGVSGIRREPVAVSRKEAETKKELPETKKDS
LEVKKDATRMPLIRGNSAVTTTTSTMPTTMSLSSKRLAGIEDIDANDKEN
LVLVSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEV
HLQFHLAAETFQLAVAIIDRYLQVVKDTKRTYLQLVGVTALFIATKYEEL
FPPAIGDFVFITDDTYTARQIRQMELQIFKAIDCNLSRPLPIHFLRRYSK
AAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNHR
AGTGFNDRHWTPTLTFYSRYSAAHLRPITRLIAKLARDAPQAKLKAIYNK
YQGSKFQKIALRTELTGALMDSIVGQSQRK*
BS06904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-PA | 530 | CG3510-PA | 1..530 | 1..530 | 2676 | 100 | Plus |
| CycB-PE | 528 | CG3510-PE | 1..528 | 1..530 | 2654 | 99.6 | Plus |
| CycB-PB | 524 | CG3510-PB | 5..524 | 11..530 | 2618 | 99.6 | Plus |
| CycB-PC | 500 | CG3510-PC | 1..500 | 31..530 | 2527 | 100 | Plus |
| CycB3-PB | 575 | CG5814-PB | 288..552 | 240..510 | 405 | 36.1 | Plus |
