Clone BS06915 Report

Search the DGRC for BS06915

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptsau-RA
Protein status:BS06915.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06915.3prime Sequence

834 bp (784 high quality bases) assembled on 2005-12-04

> BS06915.3prime
ATGGTCTAGAAAGCTTCTATTTCGTGAACGCCATGAACACCGCCCACAGA
ATTTCGTTCGCATTCGGCTTGGCCGACTCGGCTTCGAAGTCGAGATCCAG
CAGCTCCCGCACCCGCTTCATGGCCACCTCATAGTCGTCATCATTCAGCG
GCGCGAAGGCGTTCTCGATCACATCGCTGGCGTGCGCCAGGAAGATAAGC
GCCAGCATCCGCTTGTCCATGCGCTGTGGATCGTTGACCCACTTGGAGAG
CACAGAATCTTGGATCTTCTTCACCAGGCGACATTTGACAACATTGTCGC
TCAGCGGATGTGTCGTCATATCGAAGAGTAGAAAATTTTGCTTTTCCGTC
GTGAGCACACCCTTCTCCACCAGATTTTTGGCCAGACGTTCGCGTACATT
TTTCAGTTGGTAGCGCAATTTCAACGGATTCCAGGTTTCACCACTAAGAT
ATTCAATCCAGCTCTGCACCGTCTCCGGGGGATCTGTTTCCTTAATGTGT
TTAAGTGCCTCATCGAGTAGAACGTCTCCCGTCTGCTGATCCGATTTCAG
TATTAATTTCCTTGTACATAGACCACGTCGCCGCATTCCAGATTTCTCGA
TCATCACGCGACCTCGCAGTCCAAGCTCTATGAGAATGCATCCGCGCAAG
CCGCTTGATATGCAGTCGTTCCAGAAAGATGTGTAGCCCTCCTTGTCCTT
GAGTCCCAGCAGCAGAACCTCCTCCATGAGCGTTAGTCGTGTTTCCTTGG
AGTCGCCATCGTCGATATTGTCCTCCTGGTCCTTTAGGTTGTCCAGTGCA
TCCTGGTTGTCGTCCGGCGTGTTGGCATTCACCC

BS06915.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7085-PD 885 l(2)s5379-RD 71..885 831..17 4075 100 Minus
CG7085-PA 885 l(2)s5379-RA 71..885 831..17 4075 100 Minus
CG7085-PE 885 l(2)s5379-RE 71..885 831..17 4075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
sau-RE 1720 CG7085-RE 619..1434 831..16 4080 100 Minus
sau-RA 2395 CG7085-RA 619..1434 831..16 4080 100 Minus
sau-RD 2585 CG7085-RD 798..1613 831..16 4080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2229876..2230127 267..16 1260 100 Minus
2L 23513712 2L 2229637..2229813 442..266 885 100 Minus
2L 23513712 2L 2227139..2227282 831..688 720 100 Minus
2L 23513712 2L 2229264..2229394 690..560 655 100 Minus
2L 23513712 2L 2229455..2229578 562..439 620 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:26:24 has no hits.

BS06915.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:02 Download gff for BS06915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7085-PD 67..885 17..834 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:13 Download gff for BS06915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7085-PE 67..885 17..834 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:11 Download gff for BS06915.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RD 794..1620 8..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:06 Download gff for BS06915.3prime
Subject Subject Range Query Range Percent Splice Strand
sau-RD 794..1620 8..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:06 Download gff for BS06915.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2227135..2227281 689..834 99 -> Minus
2L 2229266..2229393 561..688 100 -> Minus
2L 2229457..2229575 442..560 100 -> Minus
2L 2229638..2229813 266..441 100 -> Minus
2L 2229878..2230134 8..265 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:11 Download gff for BS06915.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2227135..2227281 689..834 99 -> Minus
arm_2L 2229266..2229393 561..688 100 -> Minus
arm_2L 2229457..2229575 442..560 100 -> Minus
arm_2L 2229638..2229813 266..441 100 -> Minus
arm_2L 2229878..2230134 8..265 98   Minus

BS06915.5prime Sequence

878 bp (830 high quality bases) assembled on 2005-12-04

> BS06915.5prime
GAAGTTATCAGTCGACATGAATCGCTCCGACGGATTGGTGCGTCGCTCGG
TGAAACCCCGCGAAAACGGTGGGGCGGAGGGTGGGTTGAATGCCAACACG
CCGGACGACAACCAGGATGCACTGGACAACCTAAAGGACCAGGAGGACAA
TATCGACGATGGCGACTCCAAGGAAACACGACTAACGCTCATGGAGGAGG
TTCTGCTGCTGGGACTCAAGGACAAGGAGGGCTACACATCTTTCTGGAAC
GACTGCATATCAAGCGGCTTGCGCGGATGCATTCTCATAGAGCTTGGACT
GCGAGGTCGCGTGATGATCGAGAAATCTGGAATGCGGCGACGTGGTCTAT
GTACAAGGAAATTAATACTGAAATCGGATCAGCAGACGGGAGACGTTCTA
CTCGATGAGGCACTTAAACACATTAAGGAAACAGATCCCCCGGAGACGGT
GCAGAGCTGGATTGAATATCTTAGTGGTGAAACCTGGAATCCGTTGAAAT
TGCGCTACCAACTGAAAAATGTACGCGAACGTCTGGCCAAAAATCTGGTG
GAGAAGGGTGTGCTCACGACGGAAAAGCAAAATTTTCTACTCTTCGATAT
GACGACACATCCGCTGAGCGACAATGTTGTCAAATGTCGCCTGGTGAAGA
AGATCCAAGATTCTGTGCTCTCCAAGTGGGTCAACGATCCACAGCGCATG
GACAAGCGGATGCTGGCGCTTATCTTCCTGGCGCACGCCAGCGATGTGAT
CGAGAACGCCTTCGCGCCGCTGAATGATGACGACTATGAGGTGGCCATGA
AGCGGGTGCGGGAGCTGCTGGATCTCGACTTCGAAACCGAGTCGGCCAAG
CCGAATGCGAACGAAATTCTGTGGGCGG

BS06915.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7085-PD 885 l(2)s5379-RD 1..862 17..878 4285 99.8 Plus
CG7085-PA 885 l(2)s5379-RA 1..862 17..878 4285 99.8 Plus
CG7085-PE 885 l(2)s5379-RE 1..862 17..878 4285 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
sau-RE 1720 CG7085-RE 549..1410 17..878 4295 99.9 Plus
sau-RA 2395 CG7085-RA 549..1410 17..878 4295 99.9 Plus
sau-RD 2585 CG7085-RD 728..1589 17..878 4295 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2229876..2230103 651..878 1125 99.6 Plus
2L 23513712 2L 2227069..2227282 17..230 1070 100 Plus
2L 23513712 2L 2229637..2229813 476..652 885 100 Plus
2L 23513712 2L 2229264..2229394 228..358 655 100 Plus
2L 23513712 2L 2229455..2229578 356..479 620 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:26:56 has no hits.

BS06915.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:03 Download gff for BS06915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7085-PD 1..862 17..878 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:14 Download gff for BS06915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7085-PE 1..862 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:10:23 Download gff for BS06915.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RD 722..1589 8..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:40 Download gff for BS06915.5prime
Subject Subject Range Query Range Percent Splice Strand
sau-RD 722..1589 8..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:40 Download gff for BS06915.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2227063..2227281 8..229 98 -> Plus
2L 2229266..2229393 230..357 100 -> Plus
2L 2229457..2229575 358..476 100 -> Plus
2L 2229638..2229813 477..652 100 -> Plus
2L 2229878..2230103 653..878 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:10:23 Download gff for BS06915.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2227063..2227281 8..229 98 -> Plus
arm_2L 2229266..2229393 230..357 100 -> Plus
arm_2L 2229457..2229575 358..476 100 -> Plus
arm_2L 2229638..2229813 477..652 100 -> Plus
arm_2L 2229878..2230103 653..878 99   Plus

BS06915.complete Sequence

917 bp (917 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635664

> BS06915.complete
GAAGTTATCAGTCGACATGAATCGCTCCGACGGATTGGTGCGTCGCTCGG
TGAAACCCCGCGAAAACGGTGGGGCGGAGGGTGGGTTGAATGCCAACACG
CCGGACGACAACCAGGATGCACTGGACAACCTAAAGGACCAGGAGGACAA
TATCGACGATGGCGACTCCAAGGAAACACGACTAACGCTCATGGAGGAGG
TTCTGCTGCTGGGACTCAAGGACAAGGAGGGCTACACATCTTTCTGGAAC
GACTGCATATCAAGCGGCTTGCGCGGATGCATTCTCATAGAGCTTGGACT
GCGAGGTCGCGTGATGATCGAGAAATCTGGAATGCGGCGACGTGGTCTAT
GTACAAGGAAATTAATACTGAAATCGGATCAGCAGACGGGAGACGTTCTA
CTCGATGAGGCACTTAAACACATTAAGGAAACAGATCCCCCGGAGACGGT
GCAGAGCTGGATTGAATATCTTAGTGGTGAAACCTGGAATCCGTTGAAAT
TGCGCTACCAACTGAAAAATGTACGCGAACGTCTGGCCAAAAATCTGGTG
GAGAAGGGTGTGCTCACGACGGAAAAGCAAAATTTTCTACTCTTCGATAT
GACGACACATCCGCTGAGCGACAATGTTGTCAAATGTCGCCTGGTGAAGA
AGATCCAAGATTCTGTGCTCTCCAAGTGGGTCAACGATCCACAGCGCATG
GACAAGCGGATGCTGGCGCTTATCTTCCTGGCGCACGCCAGCGATGTGAT
CGAGAACGCCTTCGCGCCGCTGAATGATGACGACTATGAGGTGGCCATGA
AGCGGGTGCGGGAGCTGCTGGATCTCGACTTCGAAGCCGAGTCGGCCAAG
CCGAATGCGAACGAAATTCTGTGGGCGGTGTTCATGGCGTTCACGAAATA
GAAGCTTTCTAGACCAT

BS06915.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
sau-RE 885 CG7085-PE 1..885 17..901 4425 100 Plus
sau-RA 885 CG7085-PA 1..885 17..901 4425 100 Plus
sau-RD 885 CG7085-PD 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
sau-RE 1720 CG7085-RE 549..1434 17..902 4430 100 Plus
sau-RA 2395 CG7085-RA 549..1434 17..902 4430 100 Plus
sau-RD 2585 CG7085-RD 728..1613 17..902 4430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2229876..2230127 651..902 1260 100 Plus
2L 23513712 2L 2227069..2227282 17..230 1070 100 Plus
2L 23513712 2L 2229637..2229813 476..652 885 100 Plus
2L 23513712 2L 2229264..2229394 228..358 655 100 Plus
2L 23513712 2L 2229455..2229578 356..479 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:24:25 has no hits.

BS06915.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:04 Download gff for BS06915.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RE 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:47 Download gff for BS06915.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RE 541..1439 8..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:22 Download gff for BS06915.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RD 728..1606 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:04 Download gff for BS06915.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RE 541..1439 8..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:51 Download gff for BS06915.complete
Subject Subject Range Query Range Percent Splice Strand
sau-RD 728..1606 17..895 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:51 Download gff for BS06915.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2229266..2229393 230..357 100 -> Plus
2L 2229457..2229575 358..476 100 -> Plus
2L 2229638..2229813 477..652 100 -> Plus
2L 2229878..2230120 653..895 100   Plus
2L 2227069..2227281 17..229 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:22 Download gff for BS06915.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2229266..2229393 230..357 100 -> Plus
arm_2L 2227069..2227281 17..229 100 -> Plus
arm_2L 2229457..2229575 358..476 100 -> Plus
arm_2L 2229638..2229813 477..652 100 -> Plus
arm_2L 2229878..2230120 653..895 100   Plus

BS06915.pep Sequence

Translation from 16 to 900

> BS06915.pep
MNRSDGLVRRSVKPRENGGAEGGLNANTPDDNQDALDNLKDQEDNIDDGD
SKETRLTLMEEVLLLGLKDKEGYTSFWNDCISSGLRGCILIELGLRGRVM
IEKSGMRRRGLCTRKLILKSDQQTGDVLLDEALKHIKETDPPETVQSWIE
YLSGETWNPLKLRYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPL
SDNVVKCRLVKKIQDSVLSKWVNDPQRMDKRMLALIFLAHASDVIENAFA
PLNDDDYEVAMKRVRELLDLDFEAESAKPNANEILWAVFMAFTK*

BS06915.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
sau-PE 294 CG7085-PE 1..294 1..294 1520 100 Plus
sau-PA 294 CG7085-PA 1..294 1..294 1520 100 Plus
sau-PD 294 CG7085-PD 1..294 1..294 1520 100 Plus