Clone Sequence Records
BS06915.3prime Sequence
834 bp (784 high quality bases) assembled on 2005-12-04
> BS06915.3prime
ATGGTCTAGAAAGCTTCTATTTCGTGAACGCCATGAACACCGCCCACAGA
ATTTCGTTCGCATTCGGCTTGGCCGACTCGGCTTCGAAGTCGAGATCCAG
CAGCTCCCGCACCCGCTTCATGGCCACCTCATAGTCGTCATCATTCAGCG
GCGCGAAGGCGTTCTCGATCACATCGCTGGCGTGCGCCAGGAAGATAAGC
GCCAGCATCCGCTTGTCCATGCGCTGTGGATCGTTGACCCACTTGGAGAG
CACAGAATCTTGGATCTTCTTCACCAGGCGACATTTGACAACATTGTCGC
TCAGCGGATGTGTCGTCATATCGAAGAGTAGAAAATTTTGCTTTTCCGTC
GTGAGCACACCCTTCTCCACCAGATTTTTGGCCAGACGTTCGCGTACATT
TTTCAGTTGGTAGCGCAATTTCAACGGATTCCAGGTTTCACCACTAAGAT
ATTCAATCCAGCTCTGCACCGTCTCCGGGGGATCTGTTTCCTTAATGTGT
TTAAGTGCCTCATCGAGTAGAACGTCTCCCGTCTGCTGATCCGATTTCAG
TATTAATTTCCTTGTACATAGACCACGTCGCCGCATTCCAGATTTCTCGA
TCATCACGCGACCTCGCAGTCCAAGCTCTATGAGAATGCATCCGCGCAAG
CCGCTTGATATGCAGTCGTTCCAGAAAGATGTGTAGCCCTCCTTGTCCTT
GAGTCCCAGCAGCAGAACCTCCTCCATGAGCGTTAGTCGTGTTTCCTTGG
AGTCGCCATCGTCGATATTGTCCTCCTGGTCCTTTAGGTTGTCCAGTGCA
TCCTGGTTGTCGTCCGGCGTGTTGGCATTCACCC
BS06915.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7085-PD | 885 | l(2)s5379-RD | 71..885 | 831..17 | 4075 | 100 | Minus |
CG7085-PA | 885 | l(2)s5379-RA | 71..885 | 831..17 | 4075 | 100 | Minus |
CG7085-PE | 885 | l(2)s5379-RE | 71..885 | 831..17 | 4075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sau-RE | 1720 | CG7085-RE | 619..1434 | 831..16 | 4080 | 100 | Minus |
sau-RA | 2395 | CG7085-RA | 619..1434 | 831..16 | 4080 | 100 | Minus |
sau-RD | 2585 | CG7085-RD | 798..1613 | 831..16 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2229876..2230127 | 267..16 | 1260 | 100 | Minus |
2L | 23513712 | 2L | 2229637..2229813 | 442..266 | 885 | 100 | Minus |
2L | 23513712 | 2L | 2227139..2227282 | 831..688 | 720 | 100 | Minus |
2L | 23513712 | 2L | 2229264..2229394 | 690..560 | 655 | 100 | Minus |
2L | 23513712 | 2L | 2229455..2229578 | 562..439 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:26:24 has no hits.
BS06915.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:02 Download gff for
BS06915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7085-PD | 67..885 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:13 Download gff for
BS06915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7085-PE | 67..885 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:11 Download gff for
BS06915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RD | 794..1620 | 8..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:06 Download gff for
BS06915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sau-RD | 794..1620 | 8..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:06 Download gff for
BS06915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2227135..2227281 | 689..834 | 99 | -> | Minus |
2L | 2229266..2229393 | 561..688 | 100 | -> | Minus |
2L | 2229457..2229575 | 442..560 | 100 | -> | Minus |
2L | 2229638..2229813 | 266..441 | 100 | -> | Minus |
2L | 2229878..2230134 | 8..265 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:11 Download gff for
BS06915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2227135..2227281 | 689..834 | 99 | -> | Minus |
arm_2L | 2229266..2229393 | 561..688 | 100 | -> | Minus |
arm_2L | 2229457..2229575 | 442..560 | 100 | -> | Minus |
arm_2L | 2229638..2229813 | 266..441 | 100 | -> | Minus |
arm_2L | 2229878..2230134 | 8..265 | 98 | | Minus |
BS06915.5prime Sequence
878 bp (830 high quality bases) assembled on 2005-12-04
> BS06915.5prime
GAAGTTATCAGTCGACATGAATCGCTCCGACGGATTGGTGCGTCGCTCGG
TGAAACCCCGCGAAAACGGTGGGGCGGAGGGTGGGTTGAATGCCAACACG
CCGGACGACAACCAGGATGCACTGGACAACCTAAAGGACCAGGAGGACAA
TATCGACGATGGCGACTCCAAGGAAACACGACTAACGCTCATGGAGGAGG
TTCTGCTGCTGGGACTCAAGGACAAGGAGGGCTACACATCTTTCTGGAAC
GACTGCATATCAAGCGGCTTGCGCGGATGCATTCTCATAGAGCTTGGACT
GCGAGGTCGCGTGATGATCGAGAAATCTGGAATGCGGCGACGTGGTCTAT
GTACAAGGAAATTAATACTGAAATCGGATCAGCAGACGGGAGACGTTCTA
CTCGATGAGGCACTTAAACACATTAAGGAAACAGATCCCCCGGAGACGGT
GCAGAGCTGGATTGAATATCTTAGTGGTGAAACCTGGAATCCGTTGAAAT
TGCGCTACCAACTGAAAAATGTACGCGAACGTCTGGCCAAAAATCTGGTG
GAGAAGGGTGTGCTCACGACGGAAAAGCAAAATTTTCTACTCTTCGATAT
GACGACACATCCGCTGAGCGACAATGTTGTCAAATGTCGCCTGGTGAAGA
AGATCCAAGATTCTGTGCTCTCCAAGTGGGTCAACGATCCACAGCGCATG
GACAAGCGGATGCTGGCGCTTATCTTCCTGGCGCACGCCAGCGATGTGAT
CGAGAACGCCTTCGCGCCGCTGAATGATGACGACTATGAGGTGGCCATGA
AGCGGGTGCGGGAGCTGCTGGATCTCGACTTCGAAACCGAGTCGGCCAAG
CCGAATGCGAACGAAATTCTGTGGGCGG
BS06915.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7085-PD | 885 | l(2)s5379-RD | 1..862 | 17..878 | 4285 | 99.8 | Plus |
CG7085-PA | 885 | l(2)s5379-RA | 1..862 | 17..878 | 4285 | 99.8 | Plus |
CG7085-PE | 885 | l(2)s5379-RE | 1..862 | 17..878 | 4285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sau-RE | 1720 | CG7085-RE | 549..1410 | 17..878 | 4295 | 99.9 | Plus |
sau-RA | 2395 | CG7085-RA | 549..1410 | 17..878 | 4295 | 99.9 | Plus |
sau-RD | 2585 | CG7085-RD | 728..1589 | 17..878 | 4295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2229876..2230103 | 651..878 | 1125 | 99.6 | Plus |
2L | 23513712 | 2L | 2227069..2227282 | 17..230 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 2229637..2229813 | 476..652 | 885 | 100 | Plus |
2L | 23513712 | 2L | 2229264..2229394 | 228..358 | 655 | 100 | Plus |
2L | 23513712 | 2L | 2229455..2229578 | 356..479 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:26:56 has no hits.
BS06915.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:03 Download gff for
BS06915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7085-PD | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:14 Download gff for
BS06915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7085-PE | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:10:23 Download gff for
BS06915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RD | 722..1589 | 8..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:40 Download gff for
BS06915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sau-RD | 722..1589 | 8..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:40 Download gff for
BS06915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2227063..2227281 | 8..229 | 98 | -> | Plus |
2L | 2229266..2229393 | 230..357 | 100 | -> | Plus |
2L | 2229457..2229575 | 358..476 | 100 | -> | Plus |
2L | 2229638..2229813 | 477..652 | 100 | -> | Plus |
2L | 2229878..2230103 | 653..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:10:23 Download gff for
BS06915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2227063..2227281 | 8..229 | 98 | -> | Plus |
arm_2L | 2229266..2229393 | 230..357 | 100 | -> | Plus |
arm_2L | 2229457..2229575 | 358..476 | 100 | -> | Plus |
arm_2L | 2229638..2229813 | 477..652 | 100 | -> | Plus |
arm_2L | 2229878..2230103 | 653..878 | 99 | | Plus |
BS06915.complete Sequence
917 bp (917 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635664
> BS06915.complete
GAAGTTATCAGTCGACATGAATCGCTCCGACGGATTGGTGCGTCGCTCGG
TGAAACCCCGCGAAAACGGTGGGGCGGAGGGTGGGTTGAATGCCAACACG
CCGGACGACAACCAGGATGCACTGGACAACCTAAAGGACCAGGAGGACAA
TATCGACGATGGCGACTCCAAGGAAACACGACTAACGCTCATGGAGGAGG
TTCTGCTGCTGGGACTCAAGGACAAGGAGGGCTACACATCTTTCTGGAAC
GACTGCATATCAAGCGGCTTGCGCGGATGCATTCTCATAGAGCTTGGACT
GCGAGGTCGCGTGATGATCGAGAAATCTGGAATGCGGCGACGTGGTCTAT
GTACAAGGAAATTAATACTGAAATCGGATCAGCAGACGGGAGACGTTCTA
CTCGATGAGGCACTTAAACACATTAAGGAAACAGATCCCCCGGAGACGGT
GCAGAGCTGGATTGAATATCTTAGTGGTGAAACCTGGAATCCGTTGAAAT
TGCGCTACCAACTGAAAAATGTACGCGAACGTCTGGCCAAAAATCTGGTG
GAGAAGGGTGTGCTCACGACGGAAAAGCAAAATTTTCTACTCTTCGATAT
GACGACACATCCGCTGAGCGACAATGTTGTCAAATGTCGCCTGGTGAAGA
AGATCCAAGATTCTGTGCTCTCCAAGTGGGTCAACGATCCACAGCGCATG
GACAAGCGGATGCTGGCGCTTATCTTCCTGGCGCACGCCAGCGATGTGAT
CGAGAACGCCTTCGCGCCGCTGAATGATGACGACTATGAGGTGGCCATGA
AGCGGGTGCGGGAGCTGCTGGATCTCGACTTCGAAGCCGAGTCGGCCAAG
CCGAATGCGAACGAAATTCTGTGGGCGGTGTTCATGGCGTTCACGAAATA
GAAGCTTTCTAGACCAT
BS06915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sau-RE | 885 | CG7085-PE | 1..885 | 17..901 | 4425 | 100 | Plus |
sau-RA | 885 | CG7085-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
sau-RD | 885 | CG7085-PD | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sau-RE | 1720 | CG7085-RE | 549..1434 | 17..902 | 4430 | 100 | Plus |
sau-RA | 2395 | CG7085-RA | 549..1434 | 17..902 | 4430 | 100 | Plus |
sau-RD | 2585 | CG7085-RD | 728..1613 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2229876..2230127 | 651..902 | 1260 | 100 | Plus |
2L | 23513712 | 2L | 2227069..2227282 | 17..230 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 2229637..2229813 | 476..652 | 885 | 100 | Plus |
2L | 23513712 | 2L | 2229264..2229394 | 228..358 | 655 | 100 | Plus |
2L | 23513712 | 2L | 2229455..2229578 | 356..479 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:24:25 has no hits.
BS06915.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:04 Download gff for
BS06915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RE | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:47 Download gff for
BS06915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RE | 541..1439 | 8..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:22 Download gff for
BS06915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RD | 728..1606 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:04 Download gff for
BS06915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RE | 541..1439 | 8..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:51 Download gff for
BS06915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sau-RD | 728..1606 | 17..895 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:51 Download gff for
BS06915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2229266..2229393 | 230..357 | 100 | -> | Plus |
2L | 2229457..2229575 | 358..476 | 100 | -> | Plus |
2L | 2229638..2229813 | 477..652 | 100 | -> | Plus |
2L | 2229878..2230120 | 653..895 | 100 | | Plus |
2L | 2227069..2227281 | 17..229 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:22 Download gff for
BS06915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2229266..2229393 | 230..357 | 100 | -> | Plus |
arm_2L | 2227069..2227281 | 17..229 | 100 | -> | Plus |
arm_2L | 2229457..2229575 | 358..476 | 100 | -> | Plus |
arm_2L | 2229638..2229813 | 477..652 | 100 | -> | Plus |
arm_2L | 2229878..2230120 | 653..895 | 100 | | Plus |
BS06915.pep Sequence
Translation from 16 to 900
> BS06915.pep
MNRSDGLVRRSVKPRENGGAEGGLNANTPDDNQDALDNLKDQEDNIDDGD
SKETRLTLMEEVLLLGLKDKEGYTSFWNDCISSGLRGCILIELGLRGRVM
IEKSGMRRRGLCTRKLILKSDQQTGDVLLDEALKHIKETDPPETVQSWIE
YLSGETWNPLKLRYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPL
SDNVVKCRLVKKIQDSVLSKWVNDPQRMDKRMLALIFLAHASDVIENAFA
PLNDDDYEVAMKRVRELLDLDFEAESAKPNANEILWAVFMAFTK*
BS06915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sau-PE | 294 | CG7085-PE | 1..294 | 1..294 | 1520 | 100 | Plus |
sau-PA | 294 | CG7085-PA | 1..294 | 1..294 | 1520 | 100 | Plus |
sau-PD | 294 | CG7085-PD | 1..294 | 1..294 | 1520 | 100 | Plus |