Clone Sequence Records
BS06916.3prime Sequence
961 bp (744 high quality bases) assembled on 2005-12-04
> BS06916.3prime
ATGGTCTAGAAAGCTTTCATCGATGTTTGGCCCACTGCTCCCAGTACTCC
CTCTTCTGCATTTCATAGAGTCGAGATAGTGTGCGATCAAAGGCGAACAG
CTCTTCCTCGCCGGTGAAAAAACTGGCTTTGGATTCTTTTATATTTAGAT
CGTCCATTAGGGTTCGCTCAGAATCGGACAGAGTTTTGGAACCTCCAGTA
AAGCTGAACAAGTTTTCCAGCGCAACGTCGGATGATATCACCACACGCAC
TCGGTTATTGTAAAGGGTATCTATGAGCGTGATAAATCGTCGCATCTGTG
CCTTCACATCAAGGGTCAGCTGGGGCACATCTCGGATGAGGACGGTGTGA
AAGAATTGCGATATCTGTAAGAAATCACTGCCAGCCAAAGGGCGATCACA
GAGTTCCGAGAAGGTGCTGTCCAGTACCTGGCCACACGTGCGATTGAAGG
TCAGATCTCTTCCGAAATGAGTCAGGGTTCGCGGCCGGATAATATCGTTT
TCTTCGGCGCACAGGATCTTGAACATGCGATTCATACTGCCGTCCGCATC
CGTTTGGCCTTTGACGAAGTAGTTGGTGTCACCAGATTGGGCTATACGTC
GGTAGTCAATAGAATCCAACTGGGACACCTTACAGCGACGCTGAAGTAAC
GCAATGAAGGGCAGAAAGTTCGTGCGCTGCAGTCCGTTCTTGTACAGATC
CTCTGGATGCCGATTGCTGGTGGCCACAACCACAATGCCATGGCGGAAAA
GGTGCGTAAACAATCTCTTTAGCACCATGGCGTCGGCTATGTCCGTCACC
TGAAATTCATCGAAGCAAATCAACCAGGACTCACTGGCAATCAGGTCAGC
AACCGGTTTTGTGGGATCAAATGGTGCTGGNTTTTCAGAATTAAAGGCAC
GGGTCACAGGGTCTTGTCTCTGCTTGGCCTCGTGGGATGCGGGTGTGCAC
GGTGTTCATGA
BS06916.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-PA | 1377 | CG8520-RA | 492..1377 | 902..17 | 4411 | 99.8 | Minus |
CG8520-PA | 1377 | CG8520-RA | 434..460 | 961..935 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-RB | 1734 | CG8520-RB | 583..1528 | 961..15 | 4624 | 99.4 | Minus |
CG8520-RA | 2134 | CG8520-RA | 983..1928 | 961..15 | 4624 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12424200..12424768 | 961..392 | 2714 | 98.8 | Minus |
2R | 25286936 | 2R | 12424823..12425074 | 391..140 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 12425129..12425253 | 139..15 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:36:07 has no hits.
BS06916.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:04 Download gff for
BS06916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-PA | 435..1377 | 17..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:16 Download gff for
BS06916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-PA | 435..1377 | 17..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:25:29 Download gff for
BS06916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 984..1934 | 8..960 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:33 Download gff for
BS06916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 984..1934 | 8..960 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:33 Download gff for
BS06916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12424201..12424768 | 392..960 | 98 | -> | Minus |
2R | 12424823..12425074 | 140..391 | 100 | -> | Minus |
2R | 12425129..12425259 | 8..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:25:29 Download gff for
BS06916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8311706..8312273 | 392..960 | 98 | -> | Minus |
arm_2R | 8312328..8312579 | 140..391 | 100 | -> | Minus |
arm_2R | 8312634..8312764 | 8..139 | 96 | | Minus |
BS06916.5prime Sequence
904 bp (884 high quality bases) assembled on 2005-12-04
> BS06916.5prime
GAAGTTATCAGTCGACATGTTCACCTACCAACTGGGGCTTGTGGTCCGCT
GTGCGCGGCAGAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGC
GGTCTCAGTCCGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACT
GATGACCGACAACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGT
ACCACAAGATTCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGC
GGAGGATTCTTCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGA
CGATCAGGATGATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACC
TGTACGGCAGCGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTC
GACTGCTGTACCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTT
CATGAACACCGTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGAC
CTGTTGACCGTGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACA
AAACCGGTTGCTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGA
TGAATTTCAGGTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGT
TTACGCACCTTTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGG
CATCCAGAGGATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCC
CTTCATTGCGTTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTA
TTGACTACCGACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAA
GGCCAAACGGATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTG
CGCC
BS06916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-PA | 1377 | CG8520-RA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-RB | 1734 | CG8520-RB | 150..1037 | 17..904 | 4440 | 100 | Plus |
CG8520-RA | 2134 | CG8520-RA | 550..1437 | 17..904 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12424166..12424654 | 416..904 | 2445 | 100 | Plus |
2R | 25286936 | 2R | 12423710..12424108 | 17..415 | 1995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:01:43 has no hits.
BS06916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:06 Download gff for
BS06916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:17 Download gff for
BS06916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:32 Download gff for
BS06916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 541..1437 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:57 Download gff for
BS06916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 541..1437 | 9..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:57 Download gff for
BS06916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12423701..12424108 | 9..415 | 99 | -> | Plus |
2R | 12424166..12424654 | 416..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:32 Download gff for
BS06916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8311206..8311613 | 9..415 | 99 | -> | Plus |
arm_2R | 8311671..8312159 | 416..904 | 100 | | Plus |
BS06916.complete Sequence
1409 bp (1409 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635665
> BS06916.complete
GAAGTTATCAGTCGACATGTTCACCTACCAACTGGGGCTTGTGGTCCGCT
GTGCGCGGCAGAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGC
GGTCTCAGTCCGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACT
GATGACCGACAACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGT
ACCACAAGATTCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGC
GGAGGATTCTTCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGA
CGATCAGGATGATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACC
TGTACGGCAGCGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTC
GACTGCTGTACCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTT
CATGAACACCGTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGAC
CTGTTGACCGTGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACA
AAACCGGTTGCTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGA
TGAATTTCAGGTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGT
TTACGCACCTTTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGG
CATCCAGAGGATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCC
CTTCATTGCGTTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTA
TTGACTACCGACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAA
GGCCAAACGGATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTG
CGCCGAAGAAAACGATATTATCCGGCCGCGAACCCTGACTCATTTCGGAA
GAGATCTGACCTTCAATCGCACGTGTGGCCAGGTACTGGACAGCACCTTC
TCGGAACTCTGTGATCGCCCTTTGGCTGGCAGTGATTTCTTACAGATATC
GCAATTCTTTCACACCGTCCTCATCCGAGATGTGCCCCAGCTGACCCTTG
ATGTGAAGGCACAGATGCGACGATTTATCACGCTCATAGATACCCTTTAC
AATAACCGAGTGCGTGTGGTGATATCATCCGACGTTGCGCTGGAAAACTT
GTTCAGCTTTACTGGAGGTTCCAAAACTCTGTCCGATTCTGAGCGAACCC
TAATGGACGATCTAAATATAAAAGAATCCAAAGCCAGTTTTTTCACCGGC
GAGGAAGAGCTGTTCGCCTTTGATCGCACACTATCTCGACTCTATGAAAT
GCAGAAGAGGGAGTACTGGGAGCAGTGGGCCAAACATCGATGAAAGCTTT
CTAGACCAT
BS06916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-RB | 1377 | CG8520-PB | 1..1377 | 17..1393 | 6885 | 100 | Plus |
CG8520-RA | 1377 | CG8520-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-RB | 1734 | CG8520-RB | 150..1528 | 17..1395 | 6895 | 100 | Plus |
CG8520-RA | 2134 | CG8520-RA | 550..1928 | 17..1395 | 6895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12424166..12424768 | 416..1018 | 3015 | 100 | Plus |
2R | 25286936 | 2R | 12423710..12424108 | 17..415 | 1995 | 100 | Plus |
2R | 25286936 | 2R | 12424823..12425074 | 1019..1270 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 12425129..12425253 | 1271..1395 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:13:38 has no hits.
BS06916.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:46 Download gff for
BS06916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 1..1377 | 17..1393 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:24 Download gff for
BS06916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 487..1880 | 9..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:06 Download gff for
BS06916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 555..1925 | 22..1392 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:46 Download gff for
BS06916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 487..1880 | 9..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:52 Download gff for
BS06916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 555..1925 | 22..1392 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:52 Download gff for
BS06916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12424823..12425074 | 1019..1270 | 100 | -> | Plus |
2R | 12425129..12425250 | 1271..1392 | 100 | | Plus |
2R | 12423715..12424108 | 22..415 | 100 | -> | Plus |
2R | 12424166..12424768 | 416..1018 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:06 Download gff for
BS06916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8312328..8312579 | 1019..1270 | 100 | -> | Plus |
arm_2R | 8312634..8312755 | 1271..1392 | 100 | | Plus |
arm_2R | 8311220..8311613 | 22..415 | 100 | -> | Plus |
arm_2R | 8311671..8312273 | 416..1018 | 100 | -> | Plus |
BS06916.pep Sequence
Translation from 16 to 1392
> BS06916.pep
MFTYQLGLVVRCARQKPLLLWAPACHMSGLSPLKEYEKRVSSGQLMTDNR
QLQTMKELDALYHKIQGYKPSYRAGGGGGGFFSSIFGRKSSTEDDDQDDP
NAGSHAPQGLYLYGSVGVGKTTLMDLFFDCCTQIHRKQRVHFTSFMNTVH
TRIHEAKQRQGPVDRAFNSEKPAPFDPTKPVADLIASESWLICFDEFQVT
DIADAMVLKRLFTHLFRHGIVVVATSNRHPEDLYKNGLQRTNFLPFIALL
QRRCKVSQLDSIDYRRIAQSGDTNYFVKGQTDADGSMNRMFKILCAEEND
IIRPRTLTHFGRDLTFNRTCGQVLDSTFSELCDRPLAGSDFLQISQFFHT
VLIRDVPQLTLDVKAQMRRFITLIDTLYNNRVRVVISSDVALENLFSFTG
GSKTLSDSERTLMDDLNIKESKASFFTGEEELFAFDRTLSRLYEMQKREY
WEQWAKHR*
BS06916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-PB | 458 | CG8520-PB | 1..458 | 1..458 | 2407 | 100 | Plus |
CG8520-PA | 458 | CG8520-PA | 1..458 | 1..458 | 2407 | 100 | Plus |