Clone BS06916 Report

Search the DGRC for BS06916

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG8520-RA
Protein status:BS06916.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06916.3prime Sequence

961 bp (744 high quality bases) assembled on 2005-12-04

> BS06916.3prime
ATGGTCTAGAAAGCTTTCATCGATGTTTGGCCCACTGCTCCCAGTACTCC
CTCTTCTGCATTTCATAGAGTCGAGATAGTGTGCGATCAAAGGCGAACAG
CTCTTCCTCGCCGGTGAAAAAACTGGCTTTGGATTCTTTTATATTTAGAT
CGTCCATTAGGGTTCGCTCAGAATCGGACAGAGTTTTGGAACCTCCAGTA
AAGCTGAACAAGTTTTCCAGCGCAACGTCGGATGATATCACCACACGCAC
TCGGTTATTGTAAAGGGTATCTATGAGCGTGATAAATCGTCGCATCTGTG
CCTTCACATCAAGGGTCAGCTGGGGCACATCTCGGATGAGGACGGTGTGA
AAGAATTGCGATATCTGTAAGAAATCACTGCCAGCCAAAGGGCGATCACA
GAGTTCCGAGAAGGTGCTGTCCAGTACCTGGCCACACGTGCGATTGAAGG
TCAGATCTCTTCCGAAATGAGTCAGGGTTCGCGGCCGGATAATATCGTTT
TCTTCGGCGCACAGGATCTTGAACATGCGATTCATACTGCCGTCCGCATC
CGTTTGGCCTTTGACGAAGTAGTTGGTGTCACCAGATTGGGCTATACGTC
GGTAGTCAATAGAATCCAACTGGGACACCTTACAGCGACGCTGAAGTAAC
GCAATGAAGGGCAGAAAGTTCGTGCGCTGCAGTCCGTTCTTGTACAGATC
CTCTGGATGCCGATTGCTGGTGGCCACAACCACAATGCCATGGCGGAAAA
GGTGCGTAAACAATCTCTTTAGCACCATGGCGTCGGCTATGTCCGTCACC
TGAAATTCATCGAAGCAAATCAACCAGGACTCACTGGCAATCAGGTCAGC
AACCGGTTTTGTGGGATCAAATGGTGCTGGNTTTTCAGAATTAAAGGCAC
GGGTCACAGGGTCTTGTCTCTGCTTGGCCTCGTGGGATGCGGGTGTGCAC
GGTGTTCATGA

BS06916.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-PA 1377 CG8520-RA 492..1377 902..17 4411 99.8 Minus
CG8520-PA 1377 CG8520-RA 434..460 961..935 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-RB 1734 CG8520-RB 583..1528 961..15 4624 99.4 Minus
CG8520-RA 2134 CG8520-RA 983..1928 961..15 4624 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12424200..12424768 961..392 2714 98.8 Minus
2R 25286936 2R 12424823..12425074 391..140 1260 100 Minus
2R 25286936 2R 12425129..12425253 139..15 625 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:36:07 has no hits.

BS06916.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:04 Download gff for BS06916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-PA 435..1377 17..960 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:16 Download gff for BS06916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-PA 435..1377 17..960 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:25:29 Download gff for BS06916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 984..1934 8..960 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:33 Download gff for BS06916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 984..1934 8..960 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:33 Download gff for BS06916.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12424201..12424768 392..960 98 -> Minus
2R 12424823..12425074 140..391 100 -> Minus
2R 12425129..12425259 8..139 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:25:29 Download gff for BS06916.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8311706..8312273 392..960 98 -> Minus
arm_2R 8312328..8312579 140..391 100 -> Minus
arm_2R 8312634..8312764 8..139 96   Minus

BS06916.5prime Sequence

904 bp (884 high quality bases) assembled on 2005-12-04

> BS06916.5prime
GAAGTTATCAGTCGACATGTTCACCTACCAACTGGGGCTTGTGGTCCGCT
GTGCGCGGCAGAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGC
GGTCTCAGTCCGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACT
GATGACCGACAACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGT
ACCACAAGATTCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGC
GGAGGATTCTTCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGA
CGATCAGGATGATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACC
TGTACGGCAGCGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTC
GACTGCTGTACCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTT
CATGAACACCGTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGAC
CTGTTGACCGTGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACA
AAACCGGTTGCTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGA
TGAATTTCAGGTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGT
TTACGCACCTTTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGG
CATCCAGAGGATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCC
CTTCATTGCGTTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTA
TTGACTACCGACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAA
GGCCAAACGGATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTG
CGCC

BS06916.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-PA 1377 CG8520-RA 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-RB 1734 CG8520-RB 150..1037 17..904 4440 100 Plus
CG8520-RA 2134 CG8520-RA 550..1437 17..904 4440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12424166..12424654 416..904 2445 100 Plus
2R 25286936 2R 12423710..12424108 17..415 1995 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:01:43 has no hits.

BS06916.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:06 Download gff for BS06916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:17 Download gff for BS06916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:32 Download gff for BS06916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 541..1437 9..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:57 Download gff for BS06916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 541..1437 9..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:57 Download gff for BS06916.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12423701..12424108 9..415 99 -> Plus
2R 12424166..12424654 416..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:32 Download gff for BS06916.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8311206..8311613 9..415 99 -> Plus
arm_2R 8311671..8312159 416..904 100   Plus

BS06916.complete Sequence

1409 bp (1409 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635665

> BS06916.complete
GAAGTTATCAGTCGACATGTTCACCTACCAACTGGGGCTTGTGGTCCGCT
GTGCGCGGCAGAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGC
GGTCTCAGTCCGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACT
GATGACCGACAACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGT
ACCACAAGATTCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGC
GGAGGATTCTTCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGA
CGATCAGGATGATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACC
TGTACGGCAGCGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTC
GACTGCTGTACCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTT
CATGAACACCGTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGAC
CTGTTGACCGTGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACA
AAACCGGTTGCTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGA
TGAATTTCAGGTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGT
TTACGCACCTTTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGG
CATCCAGAGGATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCC
CTTCATTGCGTTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTA
TTGACTACCGACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAA
GGCCAAACGGATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTG
CGCCGAAGAAAACGATATTATCCGGCCGCGAACCCTGACTCATTTCGGAA
GAGATCTGACCTTCAATCGCACGTGTGGCCAGGTACTGGACAGCACCTTC
TCGGAACTCTGTGATCGCCCTTTGGCTGGCAGTGATTTCTTACAGATATC
GCAATTCTTTCACACCGTCCTCATCCGAGATGTGCCCCAGCTGACCCTTG
ATGTGAAGGCACAGATGCGACGATTTATCACGCTCATAGATACCCTTTAC
AATAACCGAGTGCGTGTGGTGATATCATCCGACGTTGCGCTGGAAAACTT
GTTCAGCTTTACTGGAGGTTCCAAAACTCTGTCCGATTCTGAGCGAACCC
TAATGGACGATCTAAATATAAAAGAATCCAAAGCCAGTTTTTTCACCGGC
GAGGAAGAGCTGTTCGCCTTTGATCGCACACTATCTCGACTCTATGAAAT
GCAGAAGAGGGAGTACTGGGAGCAGTGGGCCAAACATCGATGAAAGCTTT
CTAGACCAT

BS06916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-RB 1377 CG8520-PB 1..1377 17..1393 6885 100 Plus
CG8520-RA 1377 CG8520-PA 1..1377 17..1393 6885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-RB 1734 CG8520-RB 150..1528 17..1395 6895 100 Plus
CG8520-RA 2134 CG8520-RA 550..1928 17..1395 6895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12424166..12424768 416..1018 3015 100 Plus
2R 25286936 2R 12423710..12424108 17..415 1995 100 Plus
2R 25286936 2R 12424823..12425074 1019..1270 1260 100 Plus
2R 25286936 2R 12425129..12425253 1271..1395 625 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:13:38 has no hits.

BS06916.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:46 Download gff for BS06916.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 1..1377 17..1393 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:24 Download gff for BS06916.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 487..1880 9..1402 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:06 Download gff for BS06916.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 555..1925 22..1392 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:46 Download gff for BS06916.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 487..1880 9..1402 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:52 Download gff for BS06916.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 555..1925 22..1392 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:52 Download gff for BS06916.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12424823..12425074 1019..1270 100 -> Plus
2R 12425129..12425250 1271..1392 100   Plus
2R 12423715..12424108 22..415 100 -> Plus
2R 12424166..12424768 416..1018 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:06 Download gff for BS06916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8312328..8312579 1019..1270 100 -> Plus
arm_2R 8312634..8312755 1271..1392 100   Plus
arm_2R 8311220..8311613 22..415 100 -> Plus
arm_2R 8311671..8312273 416..1018 100 -> Plus

BS06916.pep Sequence

Translation from 16 to 1392

> BS06916.pep
MFTYQLGLVVRCARQKPLLLWAPACHMSGLSPLKEYEKRVSSGQLMTDNR
QLQTMKELDALYHKIQGYKPSYRAGGGGGGFFSSIFGRKSSTEDDDQDDP
NAGSHAPQGLYLYGSVGVGKTTLMDLFFDCCTQIHRKQRVHFTSFMNTVH
TRIHEAKQRQGPVDRAFNSEKPAPFDPTKPVADLIASESWLICFDEFQVT
DIADAMVLKRLFTHLFRHGIVVVATSNRHPEDLYKNGLQRTNFLPFIALL
QRRCKVSQLDSIDYRRIAQSGDTNYFVKGQTDADGSMNRMFKILCAEEND
IIRPRTLTHFGRDLTFNRTCGQVLDSTFSELCDRPLAGSDFLQISQFFHT
VLIRDVPQLTLDVKAQMRRFITLIDTLYNNRVRVVISSDVALENLFSFTG
GSKTLSDSERTLMDDLNIKESKASFFTGEEELFAFDRTLSRLYEMQKREY
WEQWAKHR*

BS06916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-PB 458 CG8520-PB 1..458 1..458 2407 100 Plus
CG8520-PA 458 CG8520-PA 1..458 1..458 2407 100 Plus