Clone BS06921 Report

Search the DGRC for BS06921

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptRpS13-RA
Protein status:BS06921.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06921.5prime Sequence

486 bp (485 high quality bases) assembled on 2005-12-04

> BS06921.5prime
GAAGTTATCAGTCGACATGGGTCGTATGCACGCTCCTGGCAAGGGTATTT
CCCAATCAGCCCTCCCCTACAGACGCACTGTCCCATCCTGGCTGAAACTG
AACGCAGATGATGTCAAGGAGCAGATTAAGAAGCTGGGCAAGAAGGGTCT
GACTCCCTCCAAAATCGGCATCATCCTGCGTGACTCGCACGGAGTTGCCC
AGGTGCGTTTCGTCAACGGAAACAAGATCCTGCGCATCATGAAGTCGGTG
GGTCTGAAGCCCGACATTCCCGAGGATCTGTACCACATGATCAAGAAGGC
CGTCGCCATCCGCAAGCACTTGGAGCGCAACCGCAAGGACAAGGACGGCA
AGTTCCGTCTGATTCTGGTCGAGTCCAGGATCCACCGCCTGGCCCGCTAC
TACAAGACCAAGAGCGTCCTGCCCCCCAACTGGAAATACGAGTCGAGCAC
TGCCTCCGCCCTGGTTGCCTAAAAGCTTTCTAGACC

BS06921.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13389-PA 456 RpS13-RA 1..456 17..472 2280 100 Plus
CG13389-PB 456 RpS13-RB 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpS13-RC 899 CG13389-RC 100..555 17..472 2280 100 Plus
RpS13-RB 611 CG13389-RB 34..489 17..472 2280 100 Plus
RpS13-RA 633 CG13389-RA 47..502 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8363821..8364126 472..167 1530 100 Minus
2L 23513712 2L 8364187..8364316 168..39 650 100 Minus
Blast to na_te.dros performed on 2015-02-04 10:32:16 has no hits.

BS06921.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:16 Download gff for BS06921.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:32 Download gff for BS06921.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13389-PB 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:32 Download gff for BS06921.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..507 12..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:48 Download gff for BS06921.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..507 12..481 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:48 Download gff for BS06921.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8363816..8364125 168..481 98 <- Minus
2L 8364188..8364315 40..167 100 <- Minus
2L 8364541..8364568 12..39 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:32 Download gff for BS06921.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8363816..8364125 168..481 98 <- Minus
arm_2L 8364188..8364315 40..167 100 <- Minus
arm_2L 8364541..8364568 12..39 92   Minus

BS06921.3prime Sequence

486 bp (485 high quality bases) assembled on 2005-12-04

> BS06921.3prime
ATGGTCTAGAAAGCTTTTAGGCAACCAGGGCGGAGGCAGTGCTCGACTCG
TATTTCCAGTTGGGGGGCAGGACGCTCTTGGTCTTGTAGTAGCGGGCCAG
GCGGTGGATCCTGGACTCGACCAGAATCAGACGGAACTTGCCGTCCTTGT
CCTTGCGGTTGCGCTCCAAGTGCTTGCGGATGGCGACGGCCTTCTTGATC
ATGTGGTACAGATCCTCGGGAATGTCGGGCTTCAGACCCACCGACTTCAT
GATGCGCAGGATCTTGTTTCCGTTGACGAAACGCACCTGGGCAACTCCGT
GCGAGTCACGCAGGATGATGCCGATTTTGGAGGGAGTCAGACCCTTCTTG
CCCAGCTTCTTAATCTGCTCCTTGACATCATCTGCGTTCAGTTTCAGCCA
GGATGGGACAGTGCGTCTGTAGGGGAGGGCTGATTGGGAAATACCCTTGC
CAGGAGCGTGCATACGACCCATGTCGACTGATAACT

BS06921.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13389-PA 456 RpS13-RA 1..456 472..17 2280 100 Minus
CG13389-PB 456 RpS13-RB 1..456 472..17 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
RpS13-RC 899 CG13389-RC 100..555 472..17 2280 100 Minus
RpS13-RB 611 CG13389-RB 34..489 472..17 2280 100 Minus
RpS13-RA 633 CG13389-RA 47..502 472..17 2280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8363821..8364126 17..322 1530 100 Plus
2L 23513712 2L 8364187..8364316 321..450 650 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:32:39 has no hits.

BS06921.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:15 Download gff for BS06921.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:31 Download gff for BS06921.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13389-PB 1..456 17..472 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:33 Download gff for BS06921.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..507 8..477 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:07 Download gff for BS06921.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..507 8..477 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:07 Download gff for BS06921.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8363816..8364125 8..321 98 <- Plus
2L 8364188..8364315 322..449 100 <- Plus
2L 8364541..8364568 450..477 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:33 Download gff for BS06921.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8363816..8364125 8..321 98 <- Plus
arm_2L 8364188..8364315 322..449 100 <- Plus
arm_2L 8364541..8364568 450..477 92   Plus

BS06921.complete Sequence

488 bp (488 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635666

> BS06921.complete
GAAGTTATCAGTCGACATGGGTCGTATGCACGCTCCTGGCAAGGGTATTT
CCCAATCAGCCCTCCCCTACAGACGCACTGTCCCATCCTGGCTGAAACTG
AACGCAGATGATGTCAAGGAGCAGATTAAGAAGCTGGGCAAGAAGGGTCT
GACTCCCTCCAAAATCGGCATCATCCTGCGTGACTCGCACGGAGTTGCCC
AGGTGCGTTTCGTCAACGGAAACAAGATCCTGCGCATCATGAAGTCGGTG
GGTCTGAAGCCCGACATTCCCGAGGATCTGTACCACATGATCAAGAAGGC
CGTCGCCATCCGCAAGCACTTGGAGCGCAACCGCAAGGACAAGGACGGCA
AGTTCCGTCTGATTCTGGTCGAGTCCAGGATCCACCGCCTGGCCCGCTAC
TACAAGACCAAGAGCGTCCTGCCCCCCAACTGGAAATACGAGTCGAGCAC
TGCCTCCGCCCTGGTTGCCTAAAAGCTTTCTAGACCAT

BS06921.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpS13-RC 456 CG13389-PC 1..456 17..472 2280 100 Plus
RpS13-RB 456 CG13389-PB 1..456 17..472 2280 100 Plus
RpS13-RA 456 CG13389-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
RpS13-RC 899 CG13389-RC 100..555 17..472 2280 100 Plus
RpS13-RB 611 CG13389-RB 34..489 17..472 2280 100 Plus
RpS13-RA 633 CG13389-RA 47..502 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8363821..8364126 472..167 1530 100 Minus
2L 23513712 2L 8364187..8364316 168..39 650 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:07:58 has no hits.

BS06921.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:08 Download gff for BS06921.complete
Subject Subject Range Query Range Percent Splice Strand
RpS13-RB 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:24 Download gff for BS06921.complete
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..507 12..481 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:30 Download gff for BS06921.complete
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 47..500 17..470 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:08 Download gff for BS06921.complete
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..507 12..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:05 Download gff for BS06921.complete
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 47..500 17..470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:05 Download gff for BS06921.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8363823..8364125 168..470 100 <- Minus
2L 8364188..8364315 40..167 100 <- Minus
2L 8364541..8364563 17..39 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:30 Download gff for BS06921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8364541..8364563 17..39 100   Minus
arm_2L 8363823..8364125 168..470 100 <- Minus
arm_2L 8364188..8364315 40..167 100 <- Minus

BS06921.pep Sequence

Translation from 16 to 471

> BS06921.pep
MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKI
GIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRK
HLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV
A*

BS06921.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
RpS13-PC 151 CG13389-PC 1..151 1..151 774 100 Plus
RpS13-PB 151 CG13389-PB 1..151 1..151 774 100 Plus
RpS13-PA 151 CG13389-PA 1..151 1..151 774 100 Plus