Clone Sequence Records
BS06921.5prime Sequence
486 bp (485 high quality bases) assembled on 2005-12-04
> BS06921.5prime
GAAGTTATCAGTCGACATGGGTCGTATGCACGCTCCTGGCAAGGGTATTT
CCCAATCAGCCCTCCCCTACAGACGCACTGTCCCATCCTGGCTGAAACTG
AACGCAGATGATGTCAAGGAGCAGATTAAGAAGCTGGGCAAGAAGGGTCT
GACTCCCTCCAAAATCGGCATCATCCTGCGTGACTCGCACGGAGTTGCCC
AGGTGCGTTTCGTCAACGGAAACAAGATCCTGCGCATCATGAAGTCGGTG
GGTCTGAAGCCCGACATTCCCGAGGATCTGTACCACATGATCAAGAAGGC
CGTCGCCATCCGCAAGCACTTGGAGCGCAACCGCAAGGACAAGGACGGCA
AGTTCCGTCTGATTCTGGTCGAGTCCAGGATCCACCGCCTGGCCCGCTAC
TACAAGACCAAGAGCGTCCTGCCCCCCAACTGGAAATACGAGTCGAGCAC
TGCCTCCGCCCTGGTTGCCTAAAAGCTTTCTAGACC
BS06921.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13389-PA | 456 | RpS13-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
CG13389-PB | 456 | RpS13-RB | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS13-RC | 899 | CG13389-RC | 100..555 | 17..472 | 2280 | 100 | Plus |
RpS13-RB | 611 | CG13389-RB | 34..489 | 17..472 | 2280 | 100 | Plus |
RpS13-RA | 633 | CG13389-RA | 47..502 | 17..472 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8363821..8364126 | 472..167 | 1530 | 100 | Minus |
2L | 23513712 | 2L | 8364187..8364316 | 168..39 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 10:32:16 has no hits.
BS06921.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:16 Download gff for
BS06921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:32 Download gff for
BS06921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13389-PB | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:32 Download gff for
BS06921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..507 | 12..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:48 Download gff for
BS06921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..507 | 12..481 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:48 Download gff for
BS06921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8363816..8364125 | 168..481 | 98 | <- | Minus |
2L | 8364188..8364315 | 40..167 | 100 | <- | Minus |
2L | 8364541..8364568 | 12..39 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:32 Download gff for
BS06921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8363816..8364125 | 168..481 | 98 | <- | Minus |
arm_2L | 8364188..8364315 | 40..167 | 100 | <- | Minus |
arm_2L | 8364541..8364568 | 12..39 | 92 | | Minus |
BS06921.3prime Sequence
486 bp (485 high quality bases) assembled on 2005-12-04
> BS06921.3prime
ATGGTCTAGAAAGCTTTTAGGCAACCAGGGCGGAGGCAGTGCTCGACTCG
TATTTCCAGTTGGGGGGCAGGACGCTCTTGGTCTTGTAGTAGCGGGCCAG
GCGGTGGATCCTGGACTCGACCAGAATCAGACGGAACTTGCCGTCCTTGT
CCTTGCGGTTGCGCTCCAAGTGCTTGCGGATGGCGACGGCCTTCTTGATC
ATGTGGTACAGATCCTCGGGAATGTCGGGCTTCAGACCCACCGACTTCAT
GATGCGCAGGATCTTGTTTCCGTTGACGAAACGCACCTGGGCAACTCCGT
GCGAGTCACGCAGGATGATGCCGATTTTGGAGGGAGTCAGACCCTTCTTG
CCCAGCTTCTTAATCTGCTCCTTGACATCATCTGCGTTCAGTTTCAGCCA
GGATGGGACAGTGCGTCTGTAGGGGAGGGCTGATTGGGAAATACCCTTGC
CAGGAGCGTGCATACGACCCATGTCGACTGATAACT
BS06921.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13389-PA | 456 | RpS13-RA | 1..456 | 472..17 | 2280 | 100 | Minus |
CG13389-PB | 456 | RpS13-RB | 1..456 | 472..17 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS13-RC | 899 | CG13389-RC | 100..555 | 472..17 | 2280 | 100 | Minus |
RpS13-RB | 611 | CG13389-RB | 34..489 | 472..17 | 2280 | 100 | Minus |
RpS13-RA | 633 | CG13389-RA | 47..502 | 472..17 | 2280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8363821..8364126 | 17..322 | 1530 | 100 | Plus |
2L | 23513712 | 2L | 8364187..8364316 | 321..450 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:32:39 has no hits.
BS06921.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:15 Download gff for
BS06921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:31 Download gff for
BS06921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13389-PB | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:33 Download gff for
BS06921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..507 | 8..477 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:07 Download gff for
BS06921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..507 | 8..477 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:07 Download gff for
BS06921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8363816..8364125 | 8..321 | 98 | <- | Plus |
2L | 8364188..8364315 | 322..449 | 100 | <- | Plus |
2L | 8364541..8364568 | 450..477 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:33 Download gff for
BS06921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8363816..8364125 | 8..321 | 98 | <- | Plus |
arm_2L | 8364188..8364315 | 322..449 | 100 | <- | Plus |
arm_2L | 8364541..8364568 | 450..477 | 92 | | Plus |
BS06921.complete Sequence
488 bp (488 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635666
> BS06921.complete
GAAGTTATCAGTCGACATGGGTCGTATGCACGCTCCTGGCAAGGGTATTT
CCCAATCAGCCCTCCCCTACAGACGCACTGTCCCATCCTGGCTGAAACTG
AACGCAGATGATGTCAAGGAGCAGATTAAGAAGCTGGGCAAGAAGGGTCT
GACTCCCTCCAAAATCGGCATCATCCTGCGTGACTCGCACGGAGTTGCCC
AGGTGCGTTTCGTCAACGGAAACAAGATCCTGCGCATCATGAAGTCGGTG
GGTCTGAAGCCCGACATTCCCGAGGATCTGTACCACATGATCAAGAAGGC
CGTCGCCATCCGCAAGCACTTGGAGCGCAACCGCAAGGACAAGGACGGCA
AGTTCCGTCTGATTCTGGTCGAGTCCAGGATCCACCGCCTGGCCCGCTAC
TACAAGACCAAGAGCGTCCTGCCCCCCAACTGGAAATACGAGTCGAGCAC
TGCCTCCGCCCTGGTTGCCTAAAAGCTTTCTAGACCAT
BS06921.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS13-RC | 456 | CG13389-PC | 1..456 | 17..472 | 2280 | 100 | Plus |
RpS13-RB | 456 | CG13389-PB | 1..456 | 17..472 | 2280 | 100 | Plus |
RpS13-RA | 456 | CG13389-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS13-RC | 899 | CG13389-RC | 100..555 | 17..472 | 2280 | 100 | Plus |
RpS13-RB | 611 | CG13389-RB | 34..489 | 17..472 | 2280 | 100 | Plus |
RpS13-RA | 633 | CG13389-RA | 47..502 | 17..472 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8363821..8364126 | 472..167 | 1530 | 100 | Minus |
2L | 23513712 | 2L | 8364187..8364316 | 168..39 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:07:58 has no hits.
BS06921.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:08 Download gff for
BS06921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RB | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:24 Download gff for
BS06921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..507 | 12..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:30 Download gff for
BS06921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 47..500 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:08 Download gff for
BS06921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..507 | 12..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:05 Download gff for
BS06921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 47..500 | 17..470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:05 Download gff for
BS06921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8363823..8364125 | 168..470 | 100 | <- | Minus |
2L | 8364188..8364315 | 40..167 | 100 | <- | Minus |
2L | 8364541..8364563 | 17..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:30 Download gff for
BS06921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8364541..8364563 | 17..39 | 100 | | Minus |
arm_2L | 8363823..8364125 | 168..470 | 100 | <- | Minus |
arm_2L | 8364188..8364315 | 40..167 | 100 | <- | Minus |
BS06921.pep Sequence
Translation from 16 to 471
> BS06921.pep
MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKI
GIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRK
HLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV
A*
BS06921.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS13-PC | 151 | CG13389-PC | 1..151 | 1..151 | 774 | 100 | Plus |
RpS13-PB | 151 | CG13389-PB | 1..151 | 1..151 | 774 | 100 | Plus |
RpS13-PA | 151 | CG13389-PA | 1..151 | 1..151 | 774 | 100 | Plus |