Clone BS06928 Report

Search the DGRC for BS06928

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG7332-RA
Protein status:BS06928.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06928.3prime Sequence

973 bp (866 high quality bases) assembled on 2005-12-04

> BS06928.3prime
ATGGTCTAGAAAGCTTTCAATTCAAGGAGGGCATATGGCCGTCGTGCCAG
TTTATTTCGATATTTGGCCACTTGGTCTGCAGGCAGGTGACCATCGGGTT
CGAGGTGCAGACCGACTTCAGATCGCCTTCCAGCAAAATGGCCGTGCCGC
AATAGTAGCGCACCTTGTTGTTCTCATTGGAGCCCGGTATGCCGTTGTAG
TGCATCAGCTCGAACGTATCCGGCGTGGAGCGGCTCTCCAGCGGGAAGAA
CTCGTCCATGAACGCATTTAGCAGTATAATGCCCAAGTTCTCCGGATCAA
GACGCTTCTGCATGAGGGCGACATAGGCCGGCTCGCTGACCAGATTCAAG
GCGATGAGAACTTCGCGCAGCATTGTGGTCGATATGAAATTGTTGCCCTC
CGGGTCGTACGATTTGAAGATCCGACGACCAGTTTCCGAGGGCGTCTCTG
GTGAGACAAGCCTCTTTTCGTTGCTGAACAGAACGGTTAAATGCGTATCG
GACCCCATCACCCATACGGGATAGCGTGGGTTCTTGAAGAAGGAGCCCAC
CGTGCAGTAACGCATTTCCTCCATCAGTGTTATAAAGCCGATGTCGCTCT
GCTCACAGATGCCACGCAGCTTCAGTCCGCCAACGTCCTGCTCATTATCC
CAGACATGGGCAACTGCTCGCCCAGTTAGCATCAGGTTAATAAGCGACTG
GCCGCCATAGCCGTATGTGCTGTGTATCAGGGGCTCCGACGTGTCCGATA
TATCGGCCGCAACCAGCTCCAAGCCCTTGGTGAGGAACACCGAGTACATG
AACAGCAGCACGCCGTATGTGTGCGCCAGCTGGTCGTAATTCTCCATATA
GTAGCGGGCCACGGCTGCGATATTCTTAAAGTGGAGCGTGTGCAGGCGCT
CGTGGAACTCATCCGGCGACAGTTCCTGGTGCATATCGTGTTCCAGCTGC
AGGGCCTGGGGAAACTTGCTGAC

BS06928.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7332-PA 1683 CG7332-RA 727..1683 973..17 4710 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7332-RB 3401 CG7332-RB 1031..1987 973..17 4740 99.7 Minus
CG7332-RA 2146 CG7332-RA 1031..1987 973..17 4740 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18886254..18886743 973..484 2405 99.4 Minus
X 23542271 X 18887053..18887215 323..161 815 100 Minus
X 23542271 X 18886835..18886995 484..324 805 100 Minus
X 23542271 X 18887298..18887446 165..17 745 100 Minus
Blast to na_te.dros performed on 2015-01-30 14:35:12 has no hits.

BS06928.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:30 Download gff for BS06928.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7332-PA 727..1683 17..973 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:52 Download gff for BS06928.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7332-PA 727..1683 17..973 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:04:32 Download gff for BS06928.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 1031..1994 9..973 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:35:40 Download gff for BS06928.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 1031..1994 9..973 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:35:40 Download gff for BS06928.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18886254..18886743 484..973 99 -> Minus
X 18886836..18886995 324..483 100 -> Minus
X 18887053..18887212 164..323 100 -> Minus
X 18887300..18887453 9..163 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:04:32 Download gff for BS06928.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18780287..18780776 484..973 99 -> Minus
arm_X 18780869..18781028 324..483 100 -> Minus
arm_X 18781086..18781245 164..323 100 -> Minus
arm_X 18781333..18781486 9..163 97   Minus

BS06928.5prime Sequence

837 bp (836 high quality bases) assembled on 2005-12-04

> BS06928.5prime
GAAGTTATCAGTCGACATGAACGAGAAAATCGTGCGGGAGCAGCGCGGCG
GCGAAGATTCCCCATCCTCCGTCTCGGCGAAAAGTGCAACGGCAGCGGCG
TCAGCGTCGACAGCGTCGATGACGTTTGCCTCGGCGGCCTTGGAATCGCA
CAAGACGACCACCATCACGACCGCCAGCAGCAGCCCTCGCACCAGTGGAG
CAAGTGCATCCGCCTCGTCATCCTCTCGATCCGCATCTGCACCTGCATCG
TCGTCCAGCCAGCAGGAAAAGCAACCGATGCTGAATGCCACCGATATGCG
CGAACTGCGCGAAATCAAGCAGTTGCTGTGGGGCGACAATGTGCGCGAAG
ATGTATTCAAGCGTTGGTCTCAAGGATTCGAGTTTAGTAAAGTGGAACCG
TCTGCATTGGTGCAGAAGCAGGGCGGTCCTTGTGCTGTGATAGCGCCGGT
GCAGGCGTACTTGCTTAAGATTATTATCATGGACTTGCCAGGCATCAAGC
TCTCGGAGATTTCCCTCGACAAATCGCAGAACCTGCTGATCCAGGCATTG
TGTGACATCCTGAAGAATTGTCGGGCGCCGCGGTACCGCATCGTCCATCT
CTTGCGCCGACGAGGAAACGCTACAGAGGCTGGATCAACCAAAAAGCGCT
CACCGGCTGGCGAGGAAGAATCTGCTTTAGCTGGCCAAGCGGCAGGATCT
TCCGAAGAGGTGGAGGAGGCGGCAGAAGCCACTCCCGCCTCGGTCAGCAA
GTTGTCCCAGGCCCTGCAGCTCGAACACGATATGCACCAGGAACTGTCGC
CGGATGAGTTCCACGAGCGCCTGCACACGCTCCACTT

BS06928.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7332-PA 1683 CG7332-RA 1..821 17..837 4105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7332-RB 3401 CG7332-RB 305..1125 17..837 4105 100 Plus
CG7332-RA 2146 CG7332-RA 305..1125 17..837 4105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18884817..18885175 17..375 1795 100 Plus
X 23542271 X 18886018..18886348 507..837 1655 100 Plus
X 23542271 X 18885827..18885962 373..508 680 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:42:55 has no hits.

BS06928.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:31 Download gff for BS06928.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7332-PA 1..821 17..837 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:53 Download gff for BS06928.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7332-PA 1..821 17..837 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:43:03 Download gff for BS06928.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 294..1125 5..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:00 Download gff for BS06928.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 294..1125 5..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:00 Download gff for BS06928.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18884806..18885174 5..374 98 -> Plus
X 18885829..18885962 375..508 100 -> Plus
X 18886020..18886348 509..837 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:43:03 Download gff for BS06928.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18778839..18779207 5..374 98 -> Plus
arm_X 18779862..18779995 375..508 100 -> Plus
arm_X 18780053..18780381 509..837 100   Plus

BS06928.complete Sequence

1715 bp (1715 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635668

> BS06928.complete
GAAGTTATCAGTCGACATGAACGAGAAAATCGTGCGGGAGCAGCGCGGCG
GCGAAGATTCCCCATCCTCCGTCTCGGCGAAAAGTGCAACGGCAGCGGCG
TCAGCGTCGACAGCGTCGATGACGTTTGCCTCGGCGGCCTTGGAATCGCA
CAAGACGACCACCATCACGACCGCCAGCAGCAGCCCTCGCACCAGTGGAG
CAAGTGCATCCGCCTCGTCATCCTCTCGATCCGCATCTGCACCTGCATCG
TCGTCCAGCCAGCAGGAAAAGCAACCGATGCTGAATGCCACCGATATGCG
CGAACTGCGCGAAATCAAGCAGTTGCTGTGGGGCGACAATGTGCGCGAAG
ATGTATTCAAGCGTTGGTCTCAAGGATTCGAGTTTAGTAAAGTGGAACCG
TCTGCATTGGTGCAGAAGCAGGGCGGTCCTTGTGCTGTGATAGCGCCGGT
GCAGGCGTACTTGCTTAAGATTATTATCATGGACTTGCCAGGCATCAAGC
TCTCGGAGATTTCCCTCGACAAATCGCAGAACCTGCTGATCCAGGCATTG
TGTGACATCCTGAAGAATTGTCGGGCGCCGCGGTACCGCATCGTCCATCT
CTTGCGCCGACGAGGAAACGCTACAGAGGCTGGATCAACCAAAAAGCGCT
CACCGGCTGGCGAGGAAGAATCTGCTTTAGCTGGCCAAGCGGCAGGATCT
TCCGAAGAGGTGGAGGAGGCGGCAGAAGCCACTCCCGCCTCGGTCAGCAA
GTTGTCCCAGGCCCTGCAGCTCGAACACGATATGCACCAGGAACTGTCGC
CGGATGAGTTCCACGAGCGCCTGCACACGCTCCACTTTAAGAATATCGCA
GCCGTGGCCCGCTACTATATGGAGAATTACGACCAGCTGGCGCACACATA
CGGCGTGCTGCTGTTCATGTACTCGGTGTTCCTCACCAAGGGCTTGGAGC
TGGTTGCGGCCGATATATCGGACACGTCGGAGCCCCTGATACACAGCACA
TACGGCTATGGCGGCCAGTCGCTTATTAACCTGATGCTAACTGGGCGAGC
AGTTGCCCATGTCTGGGATAATGAGCAGGACGTTGGCGGACTGAAGCTGC
GTGGCATCTGTGAGCAGAGCGACATCGGCTTTATAACACTGATGGAGGAA
ATGCGTTACTGCACGGTGGGCTCCTTCTTCAAGAACCCACGCTATCCCGT
ATGGGTGATGGGGTCCGATACGCATTTAACCGTTCTGTTCAGCAACGAAA
AGAGGCTTGTCTCACCAGAGACGCCCTCGGAAACTGGTCGTCGGATCTTC
AAATCGTACGACCCGGAGGGCAACAATTTCATATCGACCACAATGCTGCG
CGAAGTTCTCATCGCCTTGAATCTGGTCAGCGAGCCGGCCTATGTCGCCC
TCATGCAGAAGCGTCTTGATCCGGAGAACTTGGGCATTATACTGCTAAAT
GCGTTCATGGACGAGTTCTTCCCGCTGGAGAGCCGCTCCACGCCGGATAC
GTTCGAGCTGATGCACTACAACGGCATACCGGGCTCCAATGAGAACAACA
AGGTGCGCTACTATTGCGGCACGGCCATTTTGCTGGAAGGCGATCTGAAG
TCGGTCTGCACCTCGAACCCGATGGTCACCTGCCTGCAGACCAAGTGGCC
AAATATCGAAATAAACTGGCACGACGGCCATATGCCCTCCTTGAATTGAA
AGCTTTCTAGACCAT

BS06928.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7332-RB 1683 CG7332-PB 1..1683 17..1699 8415 100 Plus
CG7332-RA 1683 CG7332-PA 1..1683 17..1699 8415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7332-RB 3401 CG7332-RB 305..1987 17..1699 8415 100 Plus
CG7332-RA 2146 CG7332-RA 305..1987 17..1699 8415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18886018..18886743 507..1232 3630 100 Plus
X 23542271 X 18884817..18885175 17..375 1795 100 Plus
X 23542271 X 18887053..18887215 1393..1555 815 100 Plus
X 23542271 X 18886835..18886995 1232..1392 805 100 Plus
X 23542271 X 18887298..18887446 1551..1699 745 100 Plus
X 23542271 X 18885827..18885962 373..508 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:22:38 has no hits.

BS06928.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:48 Download gff for BS06928.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 1..1683 17..1699 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:27 Download gff for BS06928.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 305..2005 5..1707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:22 Download gff for BS06928.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 305..1986 17..1698 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:48 Download gff for BS06928.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 305..2005 5..1707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:03 Download gff for BS06928.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 305..1986 17..1698 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:03 Download gff for BS06928.complete
Subject Subject Range Query Range Percent Splice Strand
X 18884817..18885174 17..374 100 -> Plus
X 18885829..18885962 375..508 100 -> Plus
X 18886020..18886743 509..1232 100 -> Plus
X 18886836..18886995 1233..1392 100 -> Plus
X 18887053..18887212 1393..1552 100 -> Plus
X 18887300..18887445 1553..1698 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:22 Download gff for BS06928.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18779862..18779995 375..508 100 -> Plus
arm_X 18778850..18779207 17..374 100 -> Plus
arm_X 18780053..18780776 509..1232 100 -> Plus
arm_X 18780869..18781028 1233..1392 100 -> Plus
arm_X 18781086..18781245 1393..1552 100 -> Plus
arm_X 18781333..18781478 1553..1698 100   Plus

BS06928.pep Sequence

Translation from 16 to 1698

> BS06928.pep
MNEKIVREQRGGEDSPSSVSAKSATAAASASTASMTFASAALESHKTTTI
TTASSSPRTSGASASASSSSRSASAPASSSSQQEKQPMLNATDMRELREI
KQLLWGDNVREDVFKRWSQGFEFSKVEPSALVQKQGGPCAVIAPVQAYLL
KIIIMDLPGIKLSEISLDKSQNLLIQALCDILKNCRAPRYRIVHLLRRRG
NATEAGSTKKRSPAGEEESALAGQAAGSSEEVEEAAEATPASVSKLSQAL
QLEHDMHQELSPDEFHERLHTLHFKNIAAVARYYMENYDQLAHTYGVLLF
MYSVFLTKGLELVAADISDTSEPLIHSTYGYGGQSLINLMLTGRAVAHVW
DNEQDVGGLKLRGICEQSDIGFITLMEEMRYCTVGSFFKNPRYPVWVMGS
DTHLTVLFSNEKRLVSPETPSETGRRIFKSYDPEGNNFISTTMLREVLIA
LNLVSEPAYVALMQKRLDPENLGIILLNAFMDEFFPLESRSTPDTFELMH
YNGIPGSNENNKVRYYCGTAILLEGDLKSVCTSNPMVTCLQTKWPNIEIN
WHDGHMPSLN*

BS06928.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7332-PB 560 CG7332-PB 1..560 1..560 2869 100 Plus
CG7332-PA 560 CG7332-PA 1..560 1..560 2869 100 Plus