Clone Sequence Records
BS06928.3prime Sequence
973 bp (866 high quality bases) assembled on 2005-12-04
> BS06928.3prime
ATGGTCTAGAAAGCTTTCAATTCAAGGAGGGCATATGGCCGTCGTGCCAG
TTTATTTCGATATTTGGCCACTTGGTCTGCAGGCAGGTGACCATCGGGTT
CGAGGTGCAGACCGACTTCAGATCGCCTTCCAGCAAAATGGCCGTGCCGC
AATAGTAGCGCACCTTGTTGTTCTCATTGGAGCCCGGTATGCCGTTGTAG
TGCATCAGCTCGAACGTATCCGGCGTGGAGCGGCTCTCCAGCGGGAAGAA
CTCGTCCATGAACGCATTTAGCAGTATAATGCCCAAGTTCTCCGGATCAA
GACGCTTCTGCATGAGGGCGACATAGGCCGGCTCGCTGACCAGATTCAAG
GCGATGAGAACTTCGCGCAGCATTGTGGTCGATATGAAATTGTTGCCCTC
CGGGTCGTACGATTTGAAGATCCGACGACCAGTTTCCGAGGGCGTCTCTG
GTGAGACAAGCCTCTTTTCGTTGCTGAACAGAACGGTTAAATGCGTATCG
GACCCCATCACCCATACGGGATAGCGTGGGTTCTTGAAGAAGGAGCCCAC
CGTGCAGTAACGCATTTCCTCCATCAGTGTTATAAAGCCGATGTCGCTCT
GCTCACAGATGCCACGCAGCTTCAGTCCGCCAACGTCCTGCTCATTATCC
CAGACATGGGCAACTGCTCGCCCAGTTAGCATCAGGTTAATAAGCGACTG
GCCGCCATAGCCGTATGTGCTGTGTATCAGGGGCTCCGACGTGTCCGATA
TATCGGCCGCAACCAGCTCCAAGCCCTTGGTGAGGAACACCGAGTACATG
AACAGCAGCACGCCGTATGTGTGCGCCAGCTGGTCGTAATTCTCCATATA
GTAGCGGGCCACGGCTGCGATATTCTTAAAGTGGAGCGTGTGCAGGCGCT
CGTGGAACTCATCCGGCGACAGTTCCTGGTGCATATCGTGTTCCAGCTGC
AGGGCCTGGGGAAACTTGCTGAC
BS06928.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7332-PA | 1683 | CG7332-RA | 727..1683 | 973..17 | 4710 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7332-RB | 3401 | CG7332-RB | 1031..1987 | 973..17 | 4740 | 99.7 | Minus |
CG7332-RA | 2146 | CG7332-RA | 1031..1987 | 973..17 | 4740 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18886254..18886743 | 973..484 | 2405 | 99.4 | Minus |
X | 23542271 | X | 18887053..18887215 | 323..161 | 815 | 100 | Minus |
X | 23542271 | X | 18886835..18886995 | 484..324 | 805 | 100 | Minus |
X | 23542271 | X | 18887298..18887446 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 14:35:12 has no hits.
BS06928.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:30 Download gff for
BS06928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-PA | 727..1683 | 17..973 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:52 Download gff for
BS06928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-PA | 727..1683 | 17..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:04:32 Download gff for
BS06928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-RA | 1031..1994 | 9..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:35:40 Download gff for
BS06928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-RA | 1031..1994 | 9..973 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:35:40 Download gff for
BS06928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18886254..18886743 | 484..973 | 99 | -> | Minus |
X | 18886836..18886995 | 324..483 | 100 | -> | Minus |
X | 18887053..18887212 | 164..323 | 100 | -> | Minus |
X | 18887300..18887453 | 9..163 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:04:32 Download gff for
BS06928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18780287..18780776 | 484..973 | 99 | -> | Minus |
arm_X | 18780869..18781028 | 324..483 | 100 | -> | Minus |
arm_X | 18781086..18781245 | 164..323 | 100 | -> | Minus |
arm_X | 18781333..18781486 | 9..163 | 97 | | Minus |
BS06928.5prime Sequence
837 bp (836 high quality bases) assembled on 2005-12-04
> BS06928.5prime
GAAGTTATCAGTCGACATGAACGAGAAAATCGTGCGGGAGCAGCGCGGCG
GCGAAGATTCCCCATCCTCCGTCTCGGCGAAAAGTGCAACGGCAGCGGCG
TCAGCGTCGACAGCGTCGATGACGTTTGCCTCGGCGGCCTTGGAATCGCA
CAAGACGACCACCATCACGACCGCCAGCAGCAGCCCTCGCACCAGTGGAG
CAAGTGCATCCGCCTCGTCATCCTCTCGATCCGCATCTGCACCTGCATCG
TCGTCCAGCCAGCAGGAAAAGCAACCGATGCTGAATGCCACCGATATGCG
CGAACTGCGCGAAATCAAGCAGTTGCTGTGGGGCGACAATGTGCGCGAAG
ATGTATTCAAGCGTTGGTCTCAAGGATTCGAGTTTAGTAAAGTGGAACCG
TCTGCATTGGTGCAGAAGCAGGGCGGTCCTTGTGCTGTGATAGCGCCGGT
GCAGGCGTACTTGCTTAAGATTATTATCATGGACTTGCCAGGCATCAAGC
TCTCGGAGATTTCCCTCGACAAATCGCAGAACCTGCTGATCCAGGCATTG
TGTGACATCCTGAAGAATTGTCGGGCGCCGCGGTACCGCATCGTCCATCT
CTTGCGCCGACGAGGAAACGCTACAGAGGCTGGATCAACCAAAAAGCGCT
CACCGGCTGGCGAGGAAGAATCTGCTTTAGCTGGCCAAGCGGCAGGATCT
TCCGAAGAGGTGGAGGAGGCGGCAGAAGCCACTCCCGCCTCGGTCAGCAA
GTTGTCCCAGGCCCTGCAGCTCGAACACGATATGCACCAGGAACTGTCGC
CGGATGAGTTCCACGAGCGCCTGCACACGCTCCACTT
BS06928.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7332-PA | 1683 | CG7332-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7332-RB | 3401 | CG7332-RB | 305..1125 | 17..837 | 4105 | 100 | Plus |
CG7332-RA | 2146 | CG7332-RA | 305..1125 | 17..837 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18884817..18885175 | 17..375 | 1795 | 100 | Plus |
X | 23542271 | X | 18886018..18886348 | 507..837 | 1655 | 100 | Plus |
X | 23542271 | X | 18885827..18885962 | 373..508 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:42:55 has no hits.
BS06928.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:31 Download gff for
BS06928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:40:53 Download gff for
BS06928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:43:03 Download gff for
BS06928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-RA | 294..1125 | 5..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:00 Download gff for
BS06928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-RA | 294..1125 | 5..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:00 Download gff for
BS06928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18884806..18885174 | 5..374 | 98 | -> | Plus |
X | 18885829..18885962 | 375..508 | 100 | -> | Plus |
X | 18886020..18886348 | 509..837 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:43:03 Download gff for
BS06928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18778839..18779207 | 5..374 | 98 | -> | Plus |
arm_X | 18779862..18779995 | 375..508 | 100 | -> | Plus |
arm_X | 18780053..18780381 | 509..837 | 100 | | Plus |
BS06928.complete Sequence
1715 bp (1715 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635668
> BS06928.complete
GAAGTTATCAGTCGACATGAACGAGAAAATCGTGCGGGAGCAGCGCGGCG
GCGAAGATTCCCCATCCTCCGTCTCGGCGAAAAGTGCAACGGCAGCGGCG
TCAGCGTCGACAGCGTCGATGACGTTTGCCTCGGCGGCCTTGGAATCGCA
CAAGACGACCACCATCACGACCGCCAGCAGCAGCCCTCGCACCAGTGGAG
CAAGTGCATCCGCCTCGTCATCCTCTCGATCCGCATCTGCACCTGCATCG
TCGTCCAGCCAGCAGGAAAAGCAACCGATGCTGAATGCCACCGATATGCG
CGAACTGCGCGAAATCAAGCAGTTGCTGTGGGGCGACAATGTGCGCGAAG
ATGTATTCAAGCGTTGGTCTCAAGGATTCGAGTTTAGTAAAGTGGAACCG
TCTGCATTGGTGCAGAAGCAGGGCGGTCCTTGTGCTGTGATAGCGCCGGT
GCAGGCGTACTTGCTTAAGATTATTATCATGGACTTGCCAGGCATCAAGC
TCTCGGAGATTTCCCTCGACAAATCGCAGAACCTGCTGATCCAGGCATTG
TGTGACATCCTGAAGAATTGTCGGGCGCCGCGGTACCGCATCGTCCATCT
CTTGCGCCGACGAGGAAACGCTACAGAGGCTGGATCAACCAAAAAGCGCT
CACCGGCTGGCGAGGAAGAATCTGCTTTAGCTGGCCAAGCGGCAGGATCT
TCCGAAGAGGTGGAGGAGGCGGCAGAAGCCACTCCCGCCTCGGTCAGCAA
GTTGTCCCAGGCCCTGCAGCTCGAACACGATATGCACCAGGAACTGTCGC
CGGATGAGTTCCACGAGCGCCTGCACACGCTCCACTTTAAGAATATCGCA
GCCGTGGCCCGCTACTATATGGAGAATTACGACCAGCTGGCGCACACATA
CGGCGTGCTGCTGTTCATGTACTCGGTGTTCCTCACCAAGGGCTTGGAGC
TGGTTGCGGCCGATATATCGGACACGTCGGAGCCCCTGATACACAGCACA
TACGGCTATGGCGGCCAGTCGCTTATTAACCTGATGCTAACTGGGCGAGC
AGTTGCCCATGTCTGGGATAATGAGCAGGACGTTGGCGGACTGAAGCTGC
GTGGCATCTGTGAGCAGAGCGACATCGGCTTTATAACACTGATGGAGGAA
ATGCGTTACTGCACGGTGGGCTCCTTCTTCAAGAACCCACGCTATCCCGT
ATGGGTGATGGGGTCCGATACGCATTTAACCGTTCTGTTCAGCAACGAAA
AGAGGCTTGTCTCACCAGAGACGCCCTCGGAAACTGGTCGTCGGATCTTC
AAATCGTACGACCCGGAGGGCAACAATTTCATATCGACCACAATGCTGCG
CGAAGTTCTCATCGCCTTGAATCTGGTCAGCGAGCCGGCCTATGTCGCCC
TCATGCAGAAGCGTCTTGATCCGGAGAACTTGGGCATTATACTGCTAAAT
GCGTTCATGGACGAGTTCTTCCCGCTGGAGAGCCGCTCCACGCCGGATAC
GTTCGAGCTGATGCACTACAACGGCATACCGGGCTCCAATGAGAACAACA
AGGTGCGCTACTATTGCGGCACGGCCATTTTGCTGGAAGGCGATCTGAAG
TCGGTCTGCACCTCGAACCCGATGGTCACCTGCCTGCAGACCAAGTGGCC
AAATATCGAAATAAACTGGCACGACGGCCATATGCCCTCCTTGAATTGAA
AGCTTTCTAGACCAT
BS06928.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7332-RB | 1683 | CG7332-PB | 1..1683 | 17..1699 | 8415 | 100 | Plus |
CG7332-RA | 1683 | CG7332-PA | 1..1683 | 17..1699 | 8415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7332-RB | 3401 | CG7332-RB | 305..1987 | 17..1699 | 8415 | 100 | Plus |
CG7332-RA | 2146 | CG7332-RA | 305..1987 | 17..1699 | 8415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18886018..18886743 | 507..1232 | 3630 | 100 | Plus |
X | 23542271 | X | 18884817..18885175 | 17..375 | 1795 | 100 | Plus |
X | 23542271 | X | 18887053..18887215 | 1393..1555 | 815 | 100 | Plus |
X | 23542271 | X | 18886835..18886995 | 1232..1392 | 805 | 100 | Plus |
X | 23542271 | X | 18887298..18887446 | 1551..1699 | 745 | 100 | Plus |
X | 23542271 | X | 18885827..18885962 | 373..508 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:22:38 has no hits.
BS06928.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:48 Download gff for
BS06928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-RA | 1..1683 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:27 Download gff for
BS06928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-RA | 305..2005 | 5..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:22 Download gff for
BS06928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-RA | 305..1986 | 17..1698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:48 Download gff for
BS06928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-RA | 305..2005 | 5..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:03 Download gff for
BS06928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7332-RA | 305..1986 | 17..1698 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:03 Download gff for
BS06928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18884817..18885174 | 17..374 | 100 | -> | Plus |
X | 18885829..18885962 | 375..508 | 100 | -> | Plus |
X | 18886020..18886743 | 509..1232 | 100 | -> | Plus |
X | 18886836..18886995 | 1233..1392 | 100 | -> | Plus |
X | 18887053..18887212 | 1393..1552 | 100 | -> | Plus |
X | 18887300..18887445 | 1553..1698 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:22 Download gff for
BS06928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18779862..18779995 | 375..508 | 100 | -> | Plus |
arm_X | 18778850..18779207 | 17..374 | 100 | -> | Plus |
arm_X | 18780053..18780776 | 509..1232 | 100 | -> | Plus |
arm_X | 18780869..18781028 | 1233..1392 | 100 | -> | Plus |
arm_X | 18781086..18781245 | 1393..1552 | 100 | -> | Plus |
arm_X | 18781333..18781478 | 1553..1698 | 100 | | Plus |
BS06928.pep Sequence
Translation from 16 to 1698
> BS06928.pep
MNEKIVREQRGGEDSPSSVSAKSATAAASASTASMTFASAALESHKTTTI
TTASSSPRTSGASASASSSSRSASAPASSSSQQEKQPMLNATDMRELREI
KQLLWGDNVREDVFKRWSQGFEFSKVEPSALVQKQGGPCAVIAPVQAYLL
KIIIMDLPGIKLSEISLDKSQNLLIQALCDILKNCRAPRYRIVHLLRRRG
NATEAGSTKKRSPAGEEESALAGQAAGSSEEVEEAAEATPASVSKLSQAL
QLEHDMHQELSPDEFHERLHTLHFKNIAAVARYYMENYDQLAHTYGVLLF
MYSVFLTKGLELVAADISDTSEPLIHSTYGYGGQSLINLMLTGRAVAHVW
DNEQDVGGLKLRGICEQSDIGFITLMEEMRYCTVGSFFKNPRYPVWVMGS
DTHLTVLFSNEKRLVSPETPSETGRRIFKSYDPEGNNFISTTMLREVLIA
LNLVSEPAYVALMQKRLDPENLGIILLNAFMDEFFPLESRSTPDTFELMH
YNGIPGSNENNKVRYYCGTAILLEGDLKSVCTSNPMVTCLQTKWPNIEIN
WHDGHMPSLN*
BS06928.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7332-PB | 560 | CG7332-PB | 1..560 | 1..560 | 2869 | 100 | Plus |
CG7332-PA | 560 | CG7332-PA | 1..560 | 1..560 | 2869 | 100 | Plus |