Clone BS06931 Report

Search the DGRC for BS06931

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptTaf6-RA
Protein status:BS06931.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06931.3prime Sequence

887 bp (799 high quality bases) assembled on 2005-12-04

> BS06931.3prime
ATGGTCTAGAAAGCTTCTAGGATGCTCTGAAAGATTGAACTGTTATACCA
TCAACTGCTGGCGCTTCGCTACCGGCAATAACACACACATTATCGCTGCT
CCGCTGTGCAGCCGCTAGTAGACTGCCGCTCGAGCTTGAGTTCGAATTGG
AGGCACTGGCAGCGTTGGAGGCCGCGGAGAGGACCACGCTGTGCGGAGAG
CTGCCACGCCGCACCACCTTCGCCTGGCCCTGCTGCGGCGAGTTCTGGGT
GACTATCACAAACTTTTGCGCCGGCTGGTTGGCCTGAATGGCTCTTATTT
GCGGCAGGGACGAGACTCCGGGACTTCCCTGTCTCTGTGTGGTGGGCATG
GACACTCGTCCGATGGTTGTTGCTGTTTGTGCTGCACTCGTGATGGGTGC
CGTGTTGATAGTGTTGGATGACAGGGTTACAATGCTTGAGGCGGGCGCAT
TTCGAACTTTGACTACTGCCTGGCACAGCGACGGCCCCAGGAAGCCAAAG
TCGTTCTTGTAGTCCTCCGCTGTATCTGGCGCTGAGCGCATTTGCCTGAG
AATCGGGGGACAGCACTTCTGAAGCATGGCGCGGATGTGACCTGCTGCTG
TCTTGTCAGTGTTGCTGATGGAGGTGCCGAGCAGGTGAGGTTCAATGCGC
TCCGATATGAACTTAAGGCGGGGTATGATGAAAACCTTTATGACTTCGCC
CCCCAGCTCCGAGAGACCCGCAATAGAGCCGTAAAGCGAGGACAGGTGGG
TCTTGTCGTTCTGCAGGGCCTTGCTGAAGATGCGGGTGACACGGGTTTGC
AGATTGTTGGTTAGGGTATTGAAGTTCTTGCAGATTTGAGCCATCAGTCG
GGAGGCAAAGTCTCGCAGGGNCCAGTGATTGTCCAGC

BS06931.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32211-PA 1821 Taf6-RA 951..1821 887..17 4336 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-RA 2056 CG32211-RA 1023..1894 887..16 4349 99.9 Minus
Taf6-RB 2053 CG32211-RB 1023..1891 887..16 4294 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19600333..19600789 783..327 2285 100 Minus
3L 28110227 3L 19600909..19601220 327..16 1560 100 Minus
3L 28110227 3L 19600172..19600276 887..783 514 99 Minus
Blast to na_te.dros performed on 2015-02-12 00:43:48 has no hits.

BS06931.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:36 Download gff for BS06931.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-PA 951..1821 17..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:00 Download gff for BS06931.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32211-PA 951..1821 17..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:22 Download gff for BS06931.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1023..1902 8..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:03 Download gff for BS06931.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1023..1902 8..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:03 Download gff for BS06931.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19600910..19601228 8..326 98   Minus
3L 19600172..19600276 783..887 99 -> Minus
3L 19600334..19600789 327..782 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:22 Download gff for BS06931.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19593272..19593376 783..887 99 -> Minus
arm_3L 19593434..19593889 327..782 100 -> Minus
arm_3L 19594010..19594328 8..326 98   Minus

BS06931.5prime Sequence

963 bp (759 high quality bases) assembled on 2005-12-04

> BS06931.5prime
GAAGTTATCAGTCGACATGAGTGGAAAACCGTCGAAACCGAGCAGCCCCT
CCAGCAGCATGCTGTACGGCTCCAGCATCTCGGCGGAGTCCATGAAGGTG
ATCGCGGAGAGCATCGGAGTGGGCTCCCTGTCGGATGACGCCGCCAAGGA
ACTAGCGGAGGATGTGTCCATCAAGCTGAAGAGGATTGTACAGGATGCGG
CCAAGTTCATGAACCACGCCAAGCGGCAGAAGCTCTCAGTGCGGGACATC
GACATGTCCCTTAAGGTGCGAAATGTGGAGCCGCAGTACGGTTTCGTAGC
CAAGGACTTCATTCCATTCCGCTTCGCATCTGGCGGAGGACGGGAGCTGC
ACTTCACCGAGGACAAGGAAATCGACCTAGGAGAAATCACATCCACCAAC
TCTGTAAAAATTCCCCTGGATCTCACCCTGCGCTCCCATTGGTTTGTTGT
GGAGGGAGTGCAACCCACTGTGCCCGAAAACCCCCCTCCGCTCTCGAAGG
ATTCCCAGTTACTGGACTCGGTCAATCCAGTTATTAAGATGGATCAAGGC
CTAAACAAAGATGCGGCAGGCAAACCCACCACCGGCAAGATACACAAGCT
GAAAAACGTGGAGACCATTCATGTCAAGCAACTGGCCACGCACGAGTTGT
CCGTGGAGCAGCAGTTGTACTACAAGGAGATCACCGAGGCGTGCGTGGGA
TCTGATGAGCCGCGGCGCGGGGAAGCGCTGCAGTCGCTGGGATCCGATCC
TGGCCTGCACGAAATGCTTCCCCGCATGTGCACCTTCATTGCCGAGGGAG
TTAAGGTCAATGTGGTTCAGAACAACTTGGCGTTGCTTATTTACCTCATG
CGCATGGTTCGTGCGCTTCTGGATAATCCTTCGCTGTTTCTGGAGAAATA
CCTCCACGAACTGATACCCTCGGTGATGACGTGCATTGTGTCCAAACAGC
TGTGTATGCGCCC

BS06931.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32211-PA 1821 Taf6-RA 1..947 17..963 4735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-RB 2053 CG32211-RB 73..1019 17..963 4735 100 Plus
Taf6-RA 2056 CG32211-RA 73..1019 17..963 4735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19599160..19600044 17..901 4425 100 Plus
3L 28110227 3L 19600103..19600168 898..963 315 98.5 Plus
Blast to na_te.dros performed 2015-02-12 20:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 1457..1499 174..132 116 74.4 Minus

BS06931.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:37 Download gff for BS06931.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-PA 1..947 17..963 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:01 Download gff for BS06931.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32211-PA 1..947 17..963 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:17 Download gff for BS06931.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 70..1019 14..963 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:33 Download gff for BS06931.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 70..1019 14..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:33 Download gff for BS06931.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19599157..19600044 14..901 99 -> Plus
3L 19600107..19600168 902..963 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:17 Download gff for BS06931.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19592257..19593144 14..901 99 -> Plus
arm_3L 19593207..19593268 902..963 100   Plus

BS06931.complete Sequence

1853 bp assembled on 2007-10-31

GenBank Submission: KX802826

> BS06931.complete
GAAGTTATCAGTCGACATGAGTGGAAAACCGTCGAAACCGAGCAGCCCCT
CCAGCAGCATGCTGTACGGCTCCAGCATCTCGGCGGAGTCCATGAAGGTG
ATCGCGGAGAGCATCGGAGTGGGCTCCCTGTCGGATGACGCCGCCAAGGA
ACTAGCGGAGGATGTGTCCATCAAGCTGAAGAGGATTGTACAGGATGCGG
CCAAGTTCATGAACCACGCCAAGCGGCAGAAGCTCTCAGTGCGGGACATC
GACATGTCCCTTAAGGTGCGAAATGTGGAGCCGCAGTACGGTTTCGTAGC
CAAGGACTTCATTCCATTCCGCTTCGCATCTGGCGGAGGACGGGAGCTGC
ACTTCACCGAGGACAAGGAAATCGACCTAGGAGAAATCACATCCACCAAC
TCTGTAAAAATTCCCCTGGATCTCACCCTGCGCTCCCATTGGTTTGTTGT
GGAGGGAGTGCAACCCACTGTGCCCGAAAACCCCCCTCCGCTCTCGAAGG
ATTCCCAGTTACTGGACTCGGTCAATCCAGTTATTAAGATGGATCAAGGC
CTAAACAAAGATGCGGCAGGCAAACCCACCACCGGCAAGATACACAAGCT
GAAAAACGTGGAGACCATTCATGTCAAGCAACTGGCCACGCACGAGTTGT
CCGTGGAGCAGCAGTTGTACTACAAGGAGATCACCGAGGCGTGCGTGGGA
TCTGATGAGCCGCGGCGCGGGGAAGCGCTGCAGTCGCTGGGATCCGATCC
TGGCCTGCACGAAATGCTTCCCCGCATGTGCACCTTCATTGCCGAGGGAG
TTAAGGTCAATGTGGTTCAGAACAACTTGGCGTTGCTTATTTACCTCATG
CGCATGGTTCGTGCGCTTCTGGATAATCCTTCGCTGTTTCTGGAGAAATA
CCTCCACGAACTGATACCCTCGGTGATGACGTGCATTGTGTCCAAACAGC
TGTGTATGCGCCCCGAGCTGGACAATCACTGGGCCCTGCGAGACTTTGCC
TCCCGACTGATGGCTCAAATCTGCAAGAACTTCAATACCCTAACCAACAA
TCTGCAAACCCGTGTCACCCGCATCTTCAGCAAGGCCCTGCAGAACGACA
AGACCCACCTGTCCTCGCTTTACGGCTCTATTGCGGGTCTCTCGGAGCTG
GGGGGCGAAGTCATAAAGGTTTTCATCATACCCCGCCTTAAGTTCATATC
GGAGCGCATTGAACCTCACCTGCTCGGCACCTCCATCAGCAACACTGACA
AGACAGCAGCAGGTCACATCCGCGCCATGCTTCAGAAGTGCTGTCCCCCG
ATTCTCAGGCAAATGCGCTCAGCGCCAGATACAGCGGAGGACTACAAGAA
CGACTTTGGCTTCCTGGGGCCGTCGCTGTGCCAGGCAGTAGTCAAAGTTC
GAAATGCGCCCGCCTCAAGCATTGTAACCCTGTCATCCAACACTATCAAC
ACGGCACCCATCACGAGTGCAGCACAAACAGCAACAACCATCGGACGAGT
GTCCATGCCCACCACACAGAGACAGGGAAGTCCCGGAGTCTCGTCCCTGC
CGCAAATAAGAGCCATTCAGGCCAACCAGCCGGCGCAAAAGTTTGTGATA
GTCACCCAGAACTCGCCGCAGCAGGGCCAGGCGAAGGTGGTGCGGCGTGG
CAGCTCTCCGCACAGCGTGGTCCTCTCCGCGGCCTCCAACGCTGCCAGTG
CCTCCAATTCGAACTCAAGCTCGAGCGGCAGTCTACTAGCGGCTGCACAG
CGGAGCAGCGATAATGTGTGTGTTATTGCCGGTAGCGAAGCGCCAGCAGT
TGATGGTATAACAGTTCAATCTTTCAGAGCATCCTAGAAGCTTTCTAGAC
CAT

BS06931.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-RA 1821 CG32211-PA 1..1821 17..1837 9105 100 Plus
Taf6-RB 1818 CG32211-PB 1..1818 17..1837 9025 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-RA 2056 CG32211-RA 73..1894 17..1838 9110 100 Plus
Taf6-RB 2053 CG32211-RB 73..1891 17..1838 9030 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19599160..19600044 17..901 4425 100 Plus
3L 28110227 3L 19600333..19600789 1071..1527 2285 100 Plus
3L 28110227 3L 19600909..19601220 1527..1838 1560 100 Plus
3L 28110227 3L 19600103..19600276 898..1071 855 99.4 Plus
Blast to na_te.dros performed 2014-11-28 00:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 1457..1499 174..132 116 74.4 Minus

BS06931.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:23 Download gff for BS06931.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..1821 17..1837 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:37 Download gff for BS06931.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 71..1903 14..1846 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:28 Download gff for BS06931.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 73..1893 17..1837 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:54 Download gff for BS06931.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 74..1894 17..1837 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:14 Download gff for BS06931.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 73..1893 17..1837 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:14 Download gff for BS06931.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19599160..19600044 17..901 100 -> Plus
3L 19600107..19600276 902..1071 100 -> Plus
3L 19600334..19600789 1072..1527 100 -> Plus
3L 19600910..19601219 1528..1837 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:28 Download gff for BS06931.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19592260..19593144 17..901 100 -> Plus
arm_3L 19593207..19593376 902..1071 100 -> Plus
arm_3L 19593434..19593889 1072..1527 100 -> Plus
arm_3L 19594010..19594319 1528..1837 100   Plus

BS06931.pep Sequence

Translation from 16 to 1836

> BS06931.pep
MSGKPSKPSSPSSSMLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDV
SIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAKDFIP
FRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQP
TVPENPPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVET
IHVKQLATHELSVEQQLYYKEITEACVGSDEPRRGEALQSLGSDPGLHEM
LPRMCTFIAEGVKVNVVQNNLALLIYLMRMVRALLDNPSLFLEKYLHELI
PSVMTCIVSKQLCMRPELDNHWALRDFASRLMAQICKNFNTLTNNLQTRV
TRIFSKALQNDKTHLSSLYGSIAGLSELGGEVIKVFIIPRLKFISERIEP
HLLGTSISNTDKTAAGHIRAMLQKCCPPILRQMRSAPDTAEDYKNDFGFL
GPSLCQAVVKVRNAPASSIVTLSSNTINTAPITSAAQTATTIGRVSMPTT
QRQGSPGVSSLPQIRAIQANQPAQKFVIVTQNSPQQGQAKVVRRGSSPHS
VVLSAASNAASASNSNSSSSGSLLAAAQRSSDNVCVIAGSEAPAVDGITV
QSFRAS*

BS06931.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-PA 606 CG32211-PA 1..606 1..606 3047 100 Plus
Taf6-PB 605 CG32211-PB 1..605 1..606 3031 99.8 Plus
mia-PC 589 CG10390-PC 169..555 198..570 566 34.7 Plus
mia-PB 589 CG10390-PB 169..555 198..570 566 34.7 Plus
mia-PA 589 CG10390-PA 169..555 198..570 566 34.7 Plus