Clone Sequence Records
BS06932.3prime Sequence
919 bp (859 high quality bases) assembled on 2005-12-04
> BS06932.3prime
ATGGTCTAGAAAGCTTTCACTTCTTCTTATTCTTCTTGCCGTCCTTGGCC
AATTCCAGGCCCAGGATGCACTTGGGCGGCACCTTGTACGTTTCCGTGAG
CAGCGTGTGCACAAATCGCACCTGGTTGCCCTGGATTTGCAGCTGCTCGT
GCTTTTGGTGCGGCAGTTTCACCACACTGGTGCTGGCGGCGGCTCCCTGC
TTGCACAGCTTGATGAACTCGGCCAGGATGATGCCGTACGCCTCGATGTT
GCTGACCAGCGTCACCTTCTTGTTGCCCGATCGCGTGGCCAGGGACATCT
GGATGAGGGGCTTCCCGCTCGTATCTTTGCCGCTGCACATCTGGTAGGAG
TGCTCCATCTTGCTGGTGATGAGGGAGCACATCTCGCTTAACGAAACCTC
TCTGTTACCATACAGCTCGATCAGAGTGTCGTCGGGGCGCACCAGCTTGG
TCAGCGGATGGAGGAGACCATGTTTGCTCACGTACTCCCGCACAATCTTC
TTGATCTGACCCGCCGGGATTCCCTCGCCGCGCTTGTAATTCAGCTTGGT
GAAGAAGGCCGCCGTAACATCGGTCACTATGTACATCTCCTTCAGCTCGG
AGTGGAACAGGGGCGTCTCGGACGCCGCTCCATTAGCTTCGCTTGCCTTG
ACATCGGTTATAAAGTTCACCACTTCGGGGTGCTCCAGGTCCACAGATGT
GATTTTATCCACTCCCTTGCTCTCCTCCCGCACCACAATGAATCCTTGGT
CCACCATCTCGGCCAGAAAGTTGGAGAGCTTTTTGTAGCGCGTCTTCTTC
AGGTCGATTTGCTCCGTGGCCTCCGTGACCACATAGAGTCTGTAGAAATT
GCTCGTCAGCAGAGGCAGGGGCAGCTTCTTTCCATGGTTTTTCAAGGCGG
AGAGGAAGCATTCTTGAGT
BS06932.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31426-PA | 1692 | ligatin-RA | 801..1692 | 908..17 | 4435 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ligatin-RA | 1841 | CG31426-RA | 894..1797 | 919..17 | 4480 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29149940..29150843 | 17..919 | 4455 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:16:02 has no hits.
BS06932.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:38 Download gff for
BS06932.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31426-PA | 789..1692 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:03 Download gff for
BS06932.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31426-PA | 789..1692 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:01:29 Download gff for
BS06932.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 894..1799 | 13..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:19 Download gff for
BS06932.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 894..1799 | 13..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:19 Download gff for
BS06932.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29149938..29150843 | 13..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:01:29 Download gff for
BS06932.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24975660..24976565 | 13..919 | 99 | | Plus |
BS06932.5prime Sequence
894 bp (770 high quality bases) assembled on 2005-12-04
> BS06932.5prime
GAAGTTATCAGTCGACATGTTTCTCAAGCCGTACAGACCCAAGAGCAGTG
CTGCCCTCAAGGGATCCGATAGCAAGAAGTTCCGGCAGCGCGTGGAGGCG
GCGTTCCCCCATGTGTCCGTGGATCAGCTGGTGCCGGCGAAGGCGGCGGT
GACCCAGGTGAAGATCCTAACGCACGGCGGTGTTCAGAGCATGGTCTACT
GCGTGGACAAGTTGCCTTTGTTCTTCGAGCTGGACGGCGGTCAACTTGTG
CCCACCCTGTACACCCTGTGGATCGTTCCGGACATCCTGCCCTATTTCAC
CACCCACGAGGGTGTGTTACCCAAGCTGACGAACGGAGCGGATCTCATGC
TGCCCGGAGTGGTGCCCCTGGGCGTGGGACTGAGCATGTACGGGCACTTC
AAAAAGGGACAGTTGATGGCCGTAAACCTCACAAACAACAAATCTGCGGT
GGGCGTGGGCCAGTTGGCTCGCTCCAGCGATGAACTGTACATGTGCGGAG
GTCACGGTGTGGCCATCAAGATGCTCCACCTCTTTGGGGACAAGCTCTGG
TCGCATGAGCCCAGTCTGGTGCAGCAAATCCCGCTGGTCAAGACAAAGGC
CTTGTCTGGCGAGGATTTCCCTGCTCTTGGGTCTGAGACGGAAAGGAGAA
AGACCGCCAGCCCAGCTACTCCCGCTCCTGTGACCTTCGCTACGGTGGCC
CAAACCGAGGAACTGGAAACGGAAACTGCTGCTCTGACCTTGGAAAGCCA
GGAAGCTCCCGAGTCCGACGAAGAAGCCGTGGAGGAAGCCTCACCAGAAC
TTATACTCAAGAATGCCTTCCTCTCCGCCTTGAAAACCATGGAAAGAAGC
TGCCCCTGCCTCTGCTGACGAGCAATTTCTACAGACTCTATGTG
BS06932.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31426-PA | 1692 | ligatin-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
| CG31426-PA | 1692 | ligatin-RA | 818..879 | 833..894 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ligatin-RA | 1841 | CG31426-RA | 106..984 | 17..894 | 4370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29150753..29151231 | 894..417 | 2345 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29151290..29151689 | 416..17 | 2000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:19:28 has no hits.
BS06932.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:40 Download gff for
BS06932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31426-PA | 1..879 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:04 Download gff for
BS06932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31426-PA | 1..879 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:12 Download gff for
BS06932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 101..984 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:55 Download gff for
BS06932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 101..984 | 9..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:55 Download gff for
BS06932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29150753..29151231 | 417..894 | 99 | <- | Minus |
| 3R | 29151290..29151694 | 9..416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:12 Download gff for
BS06932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24976475..24976953 | 417..894 | 99 | <- | Minus |
| arm_3R | 24977012..24977416 | 9..416 | 99 | | Minus |
BS06932.complete Sequence
1724 bp assembled on 2007-10-17
GenBank Submission: FJ635669
> BS06932.complete
GAAGTTATCAGTCGACATGTTTCTCAAGCCGTACAGACCCAAGAGCAGTG
CTGCCCTCAAGGGATCCGATAGCAAGAAGTTCCGGCAGCGCGTGGAGGCG
GCGTTCCCCCATGTGTCCGTGGATCAGCTGGTGCCGGCGAAGGCGGCGGT
GACCCAGGTGAAGATCCTAACGCACGGCGGTGTTCAGAGCATGGTCTACT
GCGTGGACAAGTTGCCTTTGTTCTTCGAGCTGGACGGCGGTCAACTTGTG
CCCACCCTGTACACCCTGTGGATCGTTCCGGACATCCTGCCCTATTTCAC
CACCCACGAGGGTGTGTTACCCAAGCTGACGAACGGAGCGGATCTCATGC
TGCCCGGAGTGGTGCCCCTGGGCGTGGGACTGAGCATGTACGGGCACTTC
AAAAAGGGACAGTTGATGGCCGTAAACCTCACAAACAACAAATCTGCGGT
GGGCGTGGGCCAGTTGGCTCGCTCCAGCGATGAACTGTACATGTGCGGAG
GTCACGGTGTGGCCATCAAGATGCTCCACCTCTTTGGGGACAAGCTCTGG
TCGCATGAGCCCAGTCTGGTGCAGCAAATCCCGCTGGTCAAGACAAAGGC
CTTGTCTGGCGAGGATTTCCCTGCTCTTGGGTCTGAGACGGAAAGGAGAA
AGACCGCCAGCCCAGCTACTCCCGCTCCTGTGACCTTCGCTACGGTGGCC
CAAACCGAGGAACTGGAAACGGAAACTGCTGCTCTGACCTTGGAAAGCCA
GGAAGCTCCCGAGTCCGACGAAGAAGCCGTGGAGGAAGCCTCACCAGAAC
TTATACTCAAGAATGCCTTCCTCTCCGCCTTGAAAAACCATGGAAAGAAG
CTGCCCCTGCCTCTGCTGACGAGCAATTTCTACAGACTCTATGTGGTCAC
GGAGGCCACGGAGCAAATCGACCTGAAGAAGACGCGCTACAAAAAGCTCT
CCAACTTTCTGGCCGAGATGGTGGACCAAGGATTCATTGTGGTGCGGGAG
GAGAGCAAGGGAGTGGATAAAATCACATCTGTGGACCTGGAGCACCCCGA
AGTGGTGAACTTTATAACCGATGTCAAGGCAAGCGAAGCTAATGGAGCGG
CGTCCGAGACGCCCCTGTTCCACTCCGAGCTGAAGGAGATGTACATAGTG
ACCGATGTTACGGCGGCCTTCTTCACCAAGCTGAATTACAAGCGCGGCGA
GGGAATCCCGGCGGGTCAGATCAAGAAGATTGTGCGGGAGTACGTGAGCA
AACATGGTCTCCTCCATCCGCTGACCAAGCTGGTGCGCCCCGACGACACT
CTGATCGAGCTGTATGGTAACAGAGAGGTTTCGTTAAGCGAGATGTGCTC
CCTCATCACCAGCAAGATGGAGCACTCCTACCAGATGTGCAGCGGCAAAG
ATACGAGCGGGAAGCCCCTCATCCAGATGTCCCTGGCCACGCGATCGGGC
AACAAGAAGGTGACGCTGGTCAGCAACATCGAGGCGTACGGCATCATCCT
GGCCGAGTTCATCAAGCTGTGCAAGCAGGGAGCCGCCGCCAGCACCAGTG
TGGTGAAACTGCCGCACCAAAAGCACGAGCAGCTGCAAATCCAGGGCAAC
CAGGTGCGATTTGTGCACACGCTGCTCACGGAAACGTACAAGGTGCCGCC
CAAGTGCATCCTGGGCCTGGAATTGGCCAAGGACGGCAAGAAGAATAAGA
AGAAGTGAAAGCTTTCTAGACCAT
BS06932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ligatin-RA | 1692 | CG31426-PA | 1..1692 | 17..1708 | 8445 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ligatin-RA | 1841 | CG31426-RA | 106..1797 | 17..1708 | 8445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29149940..29151231 | 1708..417 | 6445 | 99.9 | Minus |
| 3R | 32079331 | 3R | 29151290..29151689 | 416..17 | 2000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:37:26 has no hits.
BS06932.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:25 Download gff for
BS06932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 1..1692 | 17..1708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:39 Download gff for
BS06932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 97..1795 | 9..1712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:29 Download gff for
BS06932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 112..1796 | 23..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:22 Download gff for
BS06932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 108..1792 | 23..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:44 Download gff for
BS06932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 112..1796 | 23..1707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:44 Download gff for
BS06932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29149941..29151231 | 417..1707 | 99 | <- | Minus |
| 3R | 29151290..29151683 | 23..416 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:29 Download gff for
BS06932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24975663..24976953 | 417..1707 | 99 | <- | Minus |
| arm_3R | 24977012..24977405 | 23..416 | 100 | | Minus |
BS06932.pep Sequence
Translation from 16 to 1707
> BS06932.pep
MFLKPYRPKSSAALKGSDSKKFRQRVEAAFPHVSVDQLVPAKAAVTQVKI
LTHGGVQSMVYCVDKLPLFFELDGGQLVPTLYTLWIVPDILPYFTTHEGV
LPKLTNGADLMLPGVVPLGVGLSMYGHFKKGQLMAVNLTNNKSAVGVGQL
ARSSDELYMCGGHGVAIKMLHLFGDKLWSHEPSLVQQIPLVKTKALSGED
FPALGSETERRKTASPATPAPVTFATVAQTEELETETAALTLESQEAPES
DEEAVEEASPELILKNAFLSALKNHGKKLPLPLLTSNFYRLYVVTEATEQ
IDLKKTRYKKLSNFLAEMVDQGFIVVREESKGVDKITSVDLEHPEVVNFI
TDVKASEANGAASETPLFHSELKEMYIVTDVTAAFFTKLNYKRGEGIPAG
QIKKIVREYVSKHGLLHPLTKLVRPDDTLIELYGNREVSLSEMCSLITSK
MEHSYQMCSGKDTSGKPLIQMSLATRSGNKKVTLVSNIEAYGIILAEFIK
LCKQGAAASTSVVKLPHQKHEQLQIQGNQVRFVHTLLTETYKVPPKCILG
LELAKDGKKNKKK*
BS06932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ligatin-PA | 563 | CG31426-PA | 1..563 | 1..563 | 2866 | 100 | Plus |
