Clone Sequence Records
BS06936.3prime Sequence
822 bp (759 high quality bases) assembled on 2005-12-04
> BS06936.3prime
ATGGTCTAGAAAGCTTTTATATGGTCTCGTTAATAAGGTCGATGGCCCTA
AACTGGTTGGCCACATTTACGGTCCAGTCCGATTGGTGTCCAGCGGTGAA
CTCCTTTACAAAACGGTAGTTGCAGATGAAAACCTTATCCTGGTACTCGG
GAAGGGTCCCCATGTTCCAGGGTATTTCCTCGCCGCGTTCCCGCATCTCG
GATAGACCACGCATTACGTGAAACACCATGGTGATCTCTACGAAACGCTT
CTGCAGCTTGTCGTTTGCATCGTCAAACATAATACCTACCTGATAGGGAA
AGCTGAGGTATATGTCGCTCTCCTTGATTTCTAGCTGCCTCCGTTGCGTC
ATTGACAGTTTTTGGATTACCGGTCTAAGCTCTGCGATCGCCTCGGGCGA
GACAAGATTGTCCAGGGAGTCTAAGTCGCCGCCCATCAGTTTTGAGGATA
CTACCTGCAGCGCTTGCTTGGCGCCGTATATGAAGTCCTTGAGTTGAAAC
TCGCTGTCGAAGTAGGGTCGAATTATGAACTGTATGGTGATCCAATTTTT
TAACGAGTTAAGCGCCGATGGCCACACGATCTCTGGAAAGTCCATTAGGC
GAGGCAGGCGGTTAAGGCTCTCTCTGGCATTCTGCTCCTTCTTGTCTTGC
TCCTGCGGCAGCGAGGCGAAAGACCGACTGACCGGTTGTGTTGGCTTCGA
GATGGACCCAGCTTCCTGTCCCCCGGAGGCTGCCACTGTGGGTCTGGGCT
GCAAACGCATCAGGGATATCCGGGCCATGCCCAAGCAGCGTATAAGCGTG
TGCTGCATGTCGACTGATAACT
BS06936.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-PA | 792 | CG3776-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-RB | 1004 | CG3776-RB | 104..895 | 808..17 | 3960 | 100 | Minus |
CG3776-RA | 937 | CG3776-RA | 37..828 | 808..17 | 3960 | 100 | Minus |
CG3776-RC | 751 | CG3776-RC | 37..556 | 808..289 | 2600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24969847..24970202 | 808..453 | 1780 | 100 | Minus |
2R | 25286936 | 2R | 24970251..24970549 | 456..158 | 1495 | 100 | Minus |
2R | 25286936 | 2R | 24970604..24970746 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:07:37 has no hits.
BS06936.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:47 Download gff for
BS06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:14 Download gff for
BS06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:51:43 Download gff for
BS06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 31..828 | 17..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:35 Download gff for
BS06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 31..828 | 17..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:35 Download gff for
BS06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24969841..24970200 | 455..817 | 98 | -> | Minus |
2R | 24970253..24970548 | 159..454 | 100 | -> | Minus |
2R | 24970605..24970746 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:51:43 Download gff for
BS06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20857364..20857723 | 455..817 | 98 | -> | Minus |
arm_2R | 20857776..20858071 | 159..454 | 100 | -> | Minus |
arm_2R | 20858128..20858269 | 17..158 | 100 | | Minus |
BS06936.5prime Sequence
822 bp (725 high quality bases) assembled on 2005-12-04
> BS06936.5prime
GAAGTTATCAGTCGACATGCAGCACACGCTTATACGCTGCTTGGGCATGG
CCCGGATATCCCTGATGCGTTTGCAGCCCAGACCCACAGTGGCAGCCTCC
GGGGGACAGGAAGCTGGGTCCATCTCGAAGCCAACACAACCGGTCAGTCG
GTCTTTCGCCTCGCTGCCGCAGGAGCAAGACAAGAAGGAGCAGAATGCCA
GAGAGAGCCTTAACCGCCTGCCTCGCCTAATGGACTTTCCAGAGATCGTG
TGGCCATCGGCGCTTAACTCGTTAAAAAATTGGATCACCATACAGTTCAT
AATTCGACCCTACTTCGACAGCGAGTTTCAACTCAAGGACTTCATATACG
GCGCCAAGCAAGCGCTGCAGGTAGTATCCTCAAAACTGATGGGCGGCGAC
TTAGACTCCCTGGACAATCTTGTCTCGCCCGAGGCGATCGCAGAGCTTAG
ACCGGTAATCCAAAAACTGTCAATGACGCAACGGAGGCAGCTAGAAATCA
AGGAGAGCGACATATACCTCAGCTTTCCCTATCAGGTAGGTATTATGTTT
GACGATGCAAACGACAAGCTGCAGAAGCGTTTCGTAGAGATCACCATGGT
GTTTCACGTAATGCGTGGTCTATCCGAGATGCGGGAACGCGGCGAGGAAA
TACCCTGGAACATGGGGACCCTTCCCGAGTACCAGGATAAGGTTTTCATC
TGCAACTACCGTTTTGTAAAGGAGTTCACCGCTGGACACCAATCGGACTG
GACCGTAAATGTGGCCAAACAGTTTAGGGCCATCGACCTTATTAACGAGA
CCATATAAAAGCTTTCTAGACC
BS06936.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-PA | 792 | CG3776-RA | 1..792 | 17..808 | 3935 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-RB | 1004 | CG3776-RB | 104..895 | 17..808 | 3945 | 99.9 | Plus |
CG3776-RA | 937 | CG3776-RA | 37..828 | 17..808 | 3945 | 99.9 | Plus |
CG3776-RC | 751 | CG3776-RC | 37..556 | 17..536 | 2600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24969847..24970202 | 17..372 | 1780 | 100 | Plus |
2R | 25286936 | 2R | 24970251..24970549 | 369..667 | 1495 | 100 | Plus |
2R | 25286936 | 2R | 24970604..24970746 | 666..808 | 700 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:31:48 has no hits.
BS06936.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:48 Download gff for
BS06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:16 Download gff for
BS06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:26:04 Download gff for
BS06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 31..828 | 8..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:45:37 Download gff for
BS06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 31..828 | 8..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:45:37 Download gff for
BS06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24969841..24970200 | 8..370 | 98 | -> | Plus |
2R | 24970253..24970548 | 371..666 | 100 | -> | Plus |
2R | 24970605..24970746 | 667..808 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:26:04 Download gff for
BS06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20857364..20857723 | 8..370 | 98 | -> | Plus |
arm_2R | 20857776..20858071 | 371..666 | 100 | -> | Plus |
arm_2R | 20858128..20858269 | 667..808 | 99 | | Plus |
BS06936.complete Sequence
824 bp (824 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635670
> BS06936.complete
GAAGTTATCAGTCGACATGCAGCACACGCTTATACGCTGCTTGGGCATGG
CCCGGATATCCCTGATGCGTTTGCAGCCCAGACCCACAGTGGCAGCCTCC
GGGGGACAGGAAGCTGGGTCCATCTCGAAGCCAACACAACCGGTCAGTCG
GTCTTTCGCCTCGCTGCCGCAGGAGCAAGACAAGAAGGAGCAGAATGCCA
GAGAGAGCCTTAACCGCCTGCCTCGCCTAATGGACTTTCCAGAGATCGTG
TGGCCATCGGCGCTTAACTCGTTAAAAAATTGGATCACCATACAGTTCAT
AATTCGACCCTACTTCGACAGCGAGTTTCAACTCAAGGACTTCATATACG
GCGCCAAGCAAGCGCTGCAGGTAGTATCCTCAAAACTGATGGGCGGCGAC
TTAGACTCCCTGGACAATCTTGTCTCGCCCGAGGCGATCGCAGAGCTTAG
ACCGGTAATCCAAAAACTGTCAATGACGCAACGGAGGCAGCTAGAAATCA
AGGAGAGCGACATATACCTCAGCTTTCCCTATCAGGTAGGTATTATGTTT
GACGATGCAAACGACAAGCTGCAGAAGCGTTTCGTAGAGATCACCATGGT
GTTTCACGTAATGCGTGGTCTATCCGAGATGCGGGAACGCGGCGAGGAAA
TACCCTGGAACATGGGGACCCTTCCCGAGTACCAGGATAAGGTTTTCATC
TGCAACTACCGTTTTGTAAAGGAGTTCACCGCTGGACACCAATCGGACTG
GACCGTAAATGTGGCCAACCAGTTTAGGGCCATCGACCTTATTAACGAGA
CCATATAAAAGCTTTCTAGACCAT
BS06936.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-RB | 792 | CG3776-PB | 1..792 | 17..808 | 3960 | 100 | Plus |
CG3776-RA | 792 | CG3776-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
CG3776-RC | 606 | CG3776-PC | 1..520 | 17..536 | 2600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-RB | 1004 | CG3776-RB | 104..895 | 17..808 | 3960 | 100 | Plus |
CG3776-RA | 937 | CG3776-RA | 37..828 | 17..808 | 3960 | 100 | Plus |
CG3776-RC | 751 | CG3776-RC | 37..556 | 17..536 | 2600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24969847..24970202 | 17..372 | 1780 | 100 | Plus |
2R | 25286936 | 2R | 24970251..24970549 | 369..667 | 1495 | 100 | Plus |
2R | 25286936 | 2R | 24970604..24970746 | 666..808 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:44:17 has no hits.
BS06936.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:49 Download gff for
BS06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jhebp29-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:55 Download gff for
BS06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jhebp29-RA | 69..866 | 8..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:38 Download gff for
BS06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 37..826 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:50 Download gff for
BS06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jhebp29-RA | 69..866 | 8..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:38 Download gff for
BS06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 37..826 | 17..806 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:38 Download gff for
BS06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24969847..24970200 | 17..370 | 100 | -> | Plus |
2R | 24970253..24970548 | 371..666 | 100 | -> | Plus |
2R | 24970605..24970744 | 667..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:38 Download gff for
BS06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20857370..20857723 | 17..370 | 100 | -> | Plus |
arm_2R | 20857776..20858071 | 371..666 | 100 | -> | Plus |
arm_2R | 20858128..20858267 | 667..806 | 100 | | Plus |
BS06936.pep Sequence
Translation from 16 to 807
> BS06936.pep
MQHTLIRCLGMARISLMRLQPRPTVAASGGQEAGSISKPTQPVSRSFASL
PQEQDKKEQNARESLNRLPRLMDFPEIVWPSALNSLKNWITIQFIIRPYF
DSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQK
LSMTQRRQLEIKESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMR
GLSEMRERGEEIPWNMGTLPEYQDKVFICNYRFVKEFTAGHQSDWTVNVA
NQFRAIDLINETI*
BS06936.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-PB | 263 | CG3776-PB | 1..263 | 1..263 | 1353 | 100 | Plus |
CG3776-PA | 263 | CG3776-PA | 1..263 | 1..263 | 1353 | 100 | Plus |
CG3776-PC | 201 | CG3776-PC | 1..173 | 1..173 | 874 | 100 | Plus |