Clone BS06936 Report

Search the DGRC for BS06936

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG3776-RA
Protein status:BS06936.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06936.3prime Sequence

822 bp (759 high quality bases) assembled on 2005-12-04

> BS06936.3prime
ATGGTCTAGAAAGCTTTTATATGGTCTCGTTAATAAGGTCGATGGCCCTA
AACTGGTTGGCCACATTTACGGTCCAGTCCGATTGGTGTCCAGCGGTGAA
CTCCTTTACAAAACGGTAGTTGCAGATGAAAACCTTATCCTGGTACTCGG
GAAGGGTCCCCATGTTCCAGGGTATTTCCTCGCCGCGTTCCCGCATCTCG
GATAGACCACGCATTACGTGAAACACCATGGTGATCTCTACGAAACGCTT
CTGCAGCTTGTCGTTTGCATCGTCAAACATAATACCTACCTGATAGGGAA
AGCTGAGGTATATGTCGCTCTCCTTGATTTCTAGCTGCCTCCGTTGCGTC
ATTGACAGTTTTTGGATTACCGGTCTAAGCTCTGCGATCGCCTCGGGCGA
GACAAGATTGTCCAGGGAGTCTAAGTCGCCGCCCATCAGTTTTGAGGATA
CTACCTGCAGCGCTTGCTTGGCGCCGTATATGAAGTCCTTGAGTTGAAAC
TCGCTGTCGAAGTAGGGTCGAATTATGAACTGTATGGTGATCCAATTTTT
TAACGAGTTAAGCGCCGATGGCCACACGATCTCTGGAAAGTCCATTAGGC
GAGGCAGGCGGTTAAGGCTCTCTCTGGCATTCTGCTCCTTCTTGTCTTGC
TCCTGCGGCAGCGAGGCGAAAGACCGACTGACCGGTTGTGTTGGCTTCGA
GATGGACCCAGCTTCCTGTCCCCCGGAGGCTGCCACTGTGGGTCTGGGCT
GCAAACGCATCAGGGATATCCGGGCCATGCCCAAGCAGCGTATAAGCGTG
TGCTGCATGTCGACTGATAACT

BS06936.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-PA 792 CG3776-RA 1..792 808..17 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-RB 1004 CG3776-RB 104..895 808..17 3960 100 Minus
CG3776-RA 937 CG3776-RA 37..828 808..17 3960 100 Minus
CG3776-RC 751 CG3776-RC 37..556 808..289 2600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24969847..24970202 808..453 1780 100 Minus
2R 25286936 2R 24970251..24970549 456..158 1495 100 Minus
2R 25286936 2R 24970604..24970746 159..17 715 100 Minus
Blast to na_te.dros performed on 2015-02-09 01:07:37 has no hits.

BS06936.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:47 Download gff for BS06936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:14 Download gff for BS06936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:51:43 Download gff for BS06936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 31..828 17..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:35 Download gff for BS06936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 31..828 17..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:35 Download gff for BS06936.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24969841..24970200 455..817 98 -> Minus
2R 24970253..24970548 159..454 100 -> Minus
2R 24970605..24970746 17..158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:51:43 Download gff for BS06936.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20857364..20857723 455..817 98 -> Minus
arm_2R 20857776..20858071 159..454 100 -> Minus
arm_2R 20858128..20858269 17..158 100   Minus

BS06936.5prime Sequence

822 bp (725 high quality bases) assembled on 2005-12-04

> BS06936.5prime
GAAGTTATCAGTCGACATGCAGCACACGCTTATACGCTGCTTGGGCATGG
CCCGGATATCCCTGATGCGTTTGCAGCCCAGACCCACAGTGGCAGCCTCC
GGGGGACAGGAAGCTGGGTCCATCTCGAAGCCAACACAACCGGTCAGTCG
GTCTTTCGCCTCGCTGCCGCAGGAGCAAGACAAGAAGGAGCAGAATGCCA
GAGAGAGCCTTAACCGCCTGCCTCGCCTAATGGACTTTCCAGAGATCGTG
TGGCCATCGGCGCTTAACTCGTTAAAAAATTGGATCACCATACAGTTCAT
AATTCGACCCTACTTCGACAGCGAGTTTCAACTCAAGGACTTCATATACG
GCGCCAAGCAAGCGCTGCAGGTAGTATCCTCAAAACTGATGGGCGGCGAC
TTAGACTCCCTGGACAATCTTGTCTCGCCCGAGGCGATCGCAGAGCTTAG
ACCGGTAATCCAAAAACTGTCAATGACGCAACGGAGGCAGCTAGAAATCA
AGGAGAGCGACATATACCTCAGCTTTCCCTATCAGGTAGGTATTATGTTT
GACGATGCAAACGACAAGCTGCAGAAGCGTTTCGTAGAGATCACCATGGT
GTTTCACGTAATGCGTGGTCTATCCGAGATGCGGGAACGCGGCGAGGAAA
TACCCTGGAACATGGGGACCCTTCCCGAGTACCAGGATAAGGTTTTCATC
TGCAACTACCGTTTTGTAAAGGAGTTCACCGCTGGACACCAATCGGACTG
GACCGTAAATGTGGCCAAACAGTTTAGGGCCATCGACCTTATTAACGAGA
CCATATAAAAGCTTTCTAGACC

BS06936.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-PA 792 CG3776-RA 1..792 17..808 3935 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-RB 1004 CG3776-RB 104..895 17..808 3945 99.9 Plus
CG3776-RA 937 CG3776-RA 37..828 17..808 3945 99.9 Plus
CG3776-RC 751 CG3776-RC 37..556 17..536 2600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24969847..24970202 17..372 1780 100 Plus
2R 25286936 2R 24970251..24970549 369..667 1495 100 Plus
2R 25286936 2R 24970604..24970746 666..808 700 99.3 Plus
Blast to na_te.dros performed on 2015-02-09 22:31:48 has no hits.

BS06936.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:48 Download gff for BS06936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:16 Download gff for BS06936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:26:04 Download gff for BS06936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 31..828 8..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:45:37 Download gff for BS06936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 31..828 8..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:45:37 Download gff for BS06936.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24969841..24970200 8..370 98 -> Plus
2R 24970253..24970548 371..666 100 -> Plus
2R 24970605..24970746 667..808 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:26:04 Download gff for BS06936.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20857364..20857723 8..370 98 -> Plus
arm_2R 20857776..20858071 371..666 100 -> Plus
arm_2R 20858128..20858269 667..808 99   Plus

BS06936.complete Sequence

824 bp (824 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635670

> BS06936.complete
GAAGTTATCAGTCGACATGCAGCACACGCTTATACGCTGCTTGGGCATGG
CCCGGATATCCCTGATGCGTTTGCAGCCCAGACCCACAGTGGCAGCCTCC
GGGGGACAGGAAGCTGGGTCCATCTCGAAGCCAACACAACCGGTCAGTCG
GTCTTTCGCCTCGCTGCCGCAGGAGCAAGACAAGAAGGAGCAGAATGCCA
GAGAGAGCCTTAACCGCCTGCCTCGCCTAATGGACTTTCCAGAGATCGTG
TGGCCATCGGCGCTTAACTCGTTAAAAAATTGGATCACCATACAGTTCAT
AATTCGACCCTACTTCGACAGCGAGTTTCAACTCAAGGACTTCATATACG
GCGCCAAGCAAGCGCTGCAGGTAGTATCCTCAAAACTGATGGGCGGCGAC
TTAGACTCCCTGGACAATCTTGTCTCGCCCGAGGCGATCGCAGAGCTTAG
ACCGGTAATCCAAAAACTGTCAATGACGCAACGGAGGCAGCTAGAAATCA
AGGAGAGCGACATATACCTCAGCTTTCCCTATCAGGTAGGTATTATGTTT
GACGATGCAAACGACAAGCTGCAGAAGCGTTTCGTAGAGATCACCATGGT
GTTTCACGTAATGCGTGGTCTATCCGAGATGCGGGAACGCGGCGAGGAAA
TACCCTGGAACATGGGGACCCTTCCCGAGTACCAGGATAAGGTTTTCATC
TGCAACTACCGTTTTGTAAAGGAGTTCACCGCTGGACACCAATCGGACTG
GACCGTAAATGTGGCCAACCAGTTTAGGGCCATCGACCTTATTAACGAGA
CCATATAAAAGCTTTCTAGACCAT

BS06936.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-RB 792 CG3776-PB 1..792 17..808 3960 100 Plus
CG3776-RA 792 CG3776-PA 1..792 17..808 3960 100 Plus
CG3776-RC 606 CG3776-PC 1..520 17..536 2600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-RB 1004 CG3776-RB 104..895 17..808 3960 100 Plus
CG3776-RA 937 CG3776-RA 37..828 17..808 3960 100 Plus
CG3776-RC 751 CG3776-RC 37..556 17..536 2600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24969847..24970202 17..372 1780 100 Plus
2R 25286936 2R 24970251..24970549 369..667 1495 100 Plus
2R 25286936 2R 24970604..24970746 666..808 715 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:44:17 has no hits.

BS06936.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:49 Download gff for BS06936.complete
Subject Subject Range Query Range Percent Splice Strand
Jhebp29-RA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:55 Download gff for BS06936.complete
Subject Subject Range Query Range Percent Splice Strand
Jhebp29-RA 69..866 8..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:38 Download gff for BS06936.complete
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 37..826 17..806 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:50 Download gff for BS06936.complete
Subject Subject Range Query Range Percent Splice Strand
Jhebp29-RA 69..866 8..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:38 Download gff for BS06936.complete
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 37..826 17..806 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:38 Download gff for BS06936.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24969847..24970200 17..370 100 -> Plus
2R 24970253..24970548 371..666 100 -> Plus
2R 24970605..24970744 667..806 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:38 Download gff for BS06936.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20857370..20857723 17..370 100 -> Plus
arm_2R 20857776..20858071 371..666 100 -> Plus
arm_2R 20858128..20858267 667..806 100   Plus

BS06936.pep Sequence

Translation from 16 to 807

> BS06936.pep
MQHTLIRCLGMARISLMRLQPRPTVAASGGQEAGSISKPTQPVSRSFASL
PQEQDKKEQNARESLNRLPRLMDFPEIVWPSALNSLKNWITIQFIIRPYF
DSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQK
LSMTQRRQLEIKESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMR
GLSEMRERGEEIPWNMGTLPEYQDKVFICNYRFVKEFTAGHQSDWTVNVA
NQFRAIDLINETI*

BS06936.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-PB 263 CG3776-PB 1..263 1..263 1353 100 Plus
CG3776-PA 263 CG3776-PA 1..263 1..263 1353 100 Plus
CG3776-PC 201 CG3776-PC 1..173 1..173 874 100 Plus