Clone BS06939 Report

Search the DGRC for BS06939

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptTango4-RA
Protein status:BS06939.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06939.3prime Sequence

920 bp (866 high quality bases) assembled on 2005-12-04

> BS06939.3prime
ATGGTCTAGAAAGCTTCTAGAATTTGCGGCGCTTCAGTAGATCCGGTCGC
CAGTTAATCGGATGCGACTCCTCGCTGGCCTCGTCATCCTCCTTGTACAC
TTTGATTGTCTTGTCCGCCTCGGCGGTGATTAGCCTGCTGCCCGATTGAT
CGAAGCACATGGCGAATATGCCCGCCTCGCTGTCCATGGAGCCCGGTTGG
ACGGGCGCTTGGAACCGCTGGAAATTGTAGCCGGTACGCCAGTCCCAAAA
GAACATCGTGCCGTTGTCGCCGCCCGAAACGAGCACGCCCTCACTATTCG
CCGCCATGCAATTGACAATGGACGTGTGGCCGGAGATGTTCTGCACAAAC
TTGCCCTCCGGACAGCGCCACTGCTTGATGTTATCCGGCGAGGCGGAGGC
GAACATGTACAGCGATGGATGGAGGACTATGCTGCGCACGGACTTCTTGT
GATTGGTTAGCGTGCAGACGCTCTTGCCGGCGGCCAAATCCCACAGACGC
ACCGTGGAATCGTGGGAGCCGGTGATGATCTGCGGATTGGTGGCCTGCGC
CACCACACTGGCCACCGTGTTCGTATGGCCCGTCAGTGTGTGCACATTCG
CCTTGGTCCGCATGTCCCAGATGCGGGCAGTGGAATCGCGACCGGAGGTG
GCCAGCACATCGATGGTGGGATGCAGGGCCAGCGAGTAAACAGCCGATAA
GTGACCGTGATAATGCCGTATGACTTTGTTGTACTCCAGATCCCAGCACT
TGACCTGCCGATCCTCGCCGCAGCTAAACAGATACGGATGCTTCGTGCTG
ACGGCCACACCGCGCACAGTGCTCACATGACCGGTGAGCGAGAGCTTCAG
TTTGCCGCTGGCCAGGTCCCAGATCTTGATCACACGATCGCCAGCGCCGG
TGGCGAACCACTCGTTGCCG

BS06939.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1796-PA 1449 CG1796-RA 547..1449 919..17 4515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tango4-RA 1620 CG1796-RA 639..1542 919..16 4520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12021765..12022668 919..16 4520 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:43:34 has no hits.

BS06939.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:53 Download gff for BS06939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1796-PA 545..1449 17..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:23 Download gff for BS06939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1796-PA 545..1449 17..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:19 Download gff for BS06939.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango4-RA 637..1549 6..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:05 Download gff for BS06939.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango4-RA 637..1549 6..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:05 Download gff for BS06939.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12021763..12022675 6..920 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:19 Download gff for BS06939.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11915796..11916708 6..920 99   Minus

BS06939.5prime Sequence

900 bp (801 high quality bases) assembled on 2005-12-04

> BS06939.5prime
GAAGTTATCAGTCGACATGGCCATGGAAGACGTGCAGAAGCACAGCGTGC
ACACGCTGATATTCCGCTCCCTGAAGCGCACCCACGATCTGTTCGTCTCC
AACCAGGGAAATCTGCCCGAAATCGACGAACGTTTAGAGAAGTTGCGACG
TTCCATCAAGGCGAAGGATGGCTATGGCCTTGTGCTGGACAAGGTGGCGA
AGATCGGCGAGGCCAGGAAGGCATCAGGAGCCCAAACGCCGGGCGACAAG
ACGCTGGCCATCACCGATGGCAGTGCAACGGATGCGGCCAGCGGTGCCGG
CAGTCTGGTTAAGTACAATGCGGGCGCCAGGCCAGCGGAGAAGACAGCGC
CACTGGTTACCGGCACACACACATCCCTGGTGCGCGCCTCCCTGGCGAAC
AGCAATGCAGATATGAGCGCCAATGGCGCCATCGCCAGCCATCTGCAATT
GATACCGAAGAAGGCGCCCAGCATACCCAAGCCCAAGTGGCACGCACCCT
GGAAACTGTCGCGCGTCATCTCCGGCCATTTGGGCTGGGTGCGATGCATC
GCCGTGGAGCCGGGCAACGAGTGGTTCGCCACCGGCGCTGGCGATCGTGT
GATCAAGATCTGGGACCTGGCCAGCGGCAAACTGAAGCTCTCGCTCACCG
GTCATGTGAGCACTGTGCGCGGTGTGGCCGTCAGCACGAAGCATCCGTAT
CTGTTTAGCTGCGGCGAGGATCGGCAGGTCAAGTGCTGGGATCTGGAGTA
CAACAAAGTCATACGGCATTATCACGGTCACTTATCGGCTGTTTACTCGC
TGGCCCTGCATCCCACCATCGATGTGCTGGCCACCTCCGGTCGCGATTCA
CTGCCCGCATCTGGNACATGCGGACCAAGGCGAATGTGCACACACTGACG

BS06939.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1796-PA 1449 CG1796-RA 1..833 17..849 4165 100 Plus
CG1796-PA 1449 CG1796-RA 834..885 849..900 241 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Tango4-RA 1620 CG1796-RA 93..977 17..900 4389 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12021338..12022103 136..900 3769 99.7 Plus
X 23542271 X 12021160..12021278 17..135 595 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:26:52 has no hits.

BS06939.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:54 Download gff for BS06939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1796-PA 1..885 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:25 Download gff for BS06939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1796-PA 1..885 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:10:20 Download gff for BS06939.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango4-RA 84..977 6..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:19 Download gff for BS06939.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango4-RA 84..977 6..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:19 Download gff for BS06939.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12021151..12021278 6..135 96 -> Plus
X 12021338..12022103 136..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:10:20 Download gff for BS06939.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11915184..11915311 6..135 96 -> Plus
arm_X 11915371..11916136 136..900 99   Plus

BS06939.complete Sequence

1481 bp (1481 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635671

> BS06939.complete
GAAGTTATCAGTCGACATGGCCATGGAAGACGTGCAGAAGCACAGCGTGC
ACACGCTGATATTCCGCTCCCTGAAGCGCACCCACGATCTGTTCGTCTCC
AACCAGGGAAATCTGCCCGAAATCGACGAACGTTTAGAGAAGTTGCGACG
TTCCATCAAGGCGAAGGATGGCTATGGCCTTGTGCTGGACAAGGTGGCGA
AGATCGGCGAGGCCAGGAAGGCATCAGGAGCCCAAACGCCGGGCGACAAG
ACGCTGGCCATCACCGATGGCAGTGCAACGGATGCGGCCAGCGGTGCCGG
CAGTCTGGTTAAGTACAATGCGGGCGCCAGGCCAGCGGAGAAGACAGCGC
CACTGGTTACCGGCACACACACATCCCTGGTGCGCGCCTCCCTGGCGAAC
AGCAATGCAGATATGAGCGCCAATGGCGCCATCGCCAGCCATCTGCAATT
GATACCGAAGAAGGCGCCCAGCATACCCAAGCCCAAGTGGCACGCACCCT
GGAAACTGTCGCGCGTCATCTCCGGCCATTTGGGCTGGGTGCGATGCATC
GCCGTGGAGCCGGGCAACGAGTGGTTCGCCACCGGCGCTGGCGATCGTGT
GATCAAGATCTGGGACCTGGCCAGCGGCAAACTGAAGCTCTCGCTCACCG
GTCATGTGAGCACTGTGCGCGGTGTGGCCGTCAGCACGAAGCATCCGTAT
CTGTTTAGCTGCGGCGAGGATCGGCAGGTCAAGTGCTGGGATCTGGAGTA
CAACAAAGTCATACGGCATTATCACGGTCACTTATCGGCTGTTTACTCGC
TGGCCCTGCATCCCACCATCGATGTGCTGGCCACCTCCGGTCGCGATTCC
ACTGCCCGCATCTGGGACATGCGGACCAAGGCGAATGTGCACACACTGAC
GGGCCATACGAACACGGTGGCCAGTGTGGTGGCGCAGGCCACCAATCCGC
AGATCATCACCGGCTCCCACGATTCCACGGTGCGTCTGTGGGATTTGGCC
GCCGGCAAGAGCGTCTGCACGCTAACCAATCACAAGAAGTCCGTGCGCAG
CATAGTCCTCCATCCATCGCTGTACATGTTCGCCTCCGCCTCGCCGGATA
ACATCAAGCAGTGGCGCTGTCCGGAGGGCAAGTTTGTGCAGAACATCTCC
GGCCACACGTCCATTGTCAATTGCATGGCGGCGAATAGTGAGGGCGTGCT
CGTTTCGGGCGGCGACAACGGCACGATGTTCTTTTGGGACTGGCGTACCG
GCTACAATTTCCAGCGGTTCCAAGCGCCCGTCCAACCGGGCTCCATGGAC
AGCGAGGCGGGCATATTCGCCATGTGCTTCGATCAATCGGGCAGCAGGCT
AATCACCGCCGAGGCGGACAAGACAATCAAAGTGTACAAGGAGGATGACG
AGGCCAGCGAGGAGTCGCATCCGATTAACTGGCGACCGGATCTACTGAAG
CGCCGCAAATTCTAGAAGCTTTCTAGACCAT

BS06939.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tango4-RA 1449 CG1796-PA 1..1449 17..1465 7245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tango4-RA 1620 CG1796-RA 93..1542 17..1466 7250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12021338..12022668 136..1466 6655 100 Plus
X 23542271 X 12021160..12021278 17..135 595 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:03:04 has no hits.

BS06939.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:35 Download gff for BS06939.complete
Subject Subject Range Query Range Percent Splice Strand
Tango4-RA 1..1449 17..1465 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:14 Download gff for BS06939.complete
Subject Subject Range Query Range Percent Splice Strand
Tango4-RA 88..1553 6..1476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:29 Download gff for BS06939.complete
Subject Subject Range Query Range Percent Splice Strand
Tango4-RA 93..1541 17..1465 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:35 Download gff for BS06939.complete
Subject Subject Range Query Range Percent Splice Strand
Tango4-RA 88..1553 6..1476 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:32 Download gff for BS06939.complete
Subject Subject Range Query Range Percent Splice Strand
Tango4-RA 93..1541 17..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:32 Download gff for BS06939.complete
Subject Subject Range Query Range Percent Splice Strand
X 12021160..12021278 17..135 100 -> Plus
X 12021338..12022667 136..1465 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:29 Download gff for BS06939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11915193..11915311 17..135 100 -> Plus
arm_X 11915371..11916700 136..1465 100   Plus

BS06939.pep Sequence

Translation from 16 to 1464

> BS06939.pep
MAMEDVQKHSVHTLIFRSLKRTHDLFVSNQGNLPEIDERLEKLRRSIKAK
DGYGLVLDKVAKIGEARKASGAQTPGDKTLAITDGSATDAASGAGSLVKY
NAGARPAEKTAPLVTGTHTSLVRASLANSNADMSANGAIASHLQLIPKKA
PSIPKPKWHAPWKLSRVISGHLGWVRCIAVEPGNEWFATGAGDRVIKIWD
LASGKLKLSLTGHVSTVRGVAVSTKHPYLFSCGEDRQVKCWDLEYNKVIR
HYHGHLSAVYSLALHPTIDVLATSGRDSTARIWDMRTKANVHTLTGHTNT
VASVVAQATNPQIITGSHDSTVRLWDLAAGKSVCTLTNHKKSVRSIVLHP
SLYMFASASPDNIKQWRCPEGKFVQNISGHTSIVNCMAANSEGVLVSGGD
NGTMFFWDWRTGYNFQRFQAPVQPGSMDSEAGIFAMCFDQSGSRLITAEA
DKTIKVYKEDDEASEESHPINWRPDLLKRRKF*

BS06939.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Tango4-PA 482 CG1796-PA 1..482 1..482 2535 100 Plus
wds-PB 361 CG17437-PB 17..360 106..460 352 26.3 Plus
wds-PA 361 CG17437-PA 17..360 106..460 352 26.3 Plus
CG10931-PA 345 CG10931-PA 46..300 162..411 288 27.3 Plus
Lis-1-PG 411 CG8440-PG 88..409 148..458 284 27.5 Plus