Clone Sequence Records
BS06939.3prime Sequence
920 bp (866 high quality bases) assembled on 2005-12-04
> BS06939.3prime
ATGGTCTAGAAAGCTTCTAGAATTTGCGGCGCTTCAGTAGATCCGGTCGC
CAGTTAATCGGATGCGACTCCTCGCTGGCCTCGTCATCCTCCTTGTACAC
TTTGATTGTCTTGTCCGCCTCGGCGGTGATTAGCCTGCTGCCCGATTGAT
CGAAGCACATGGCGAATATGCCCGCCTCGCTGTCCATGGAGCCCGGTTGG
ACGGGCGCTTGGAACCGCTGGAAATTGTAGCCGGTACGCCAGTCCCAAAA
GAACATCGTGCCGTTGTCGCCGCCCGAAACGAGCACGCCCTCACTATTCG
CCGCCATGCAATTGACAATGGACGTGTGGCCGGAGATGTTCTGCACAAAC
TTGCCCTCCGGACAGCGCCACTGCTTGATGTTATCCGGCGAGGCGGAGGC
GAACATGTACAGCGATGGATGGAGGACTATGCTGCGCACGGACTTCTTGT
GATTGGTTAGCGTGCAGACGCTCTTGCCGGCGGCCAAATCCCACAGACGC
ACCGTGGAATCGTGGGAGCCGGTGATGATCTGCGGATTGGTGGCCTGCGC
CACCACACTGGCCACCGTGTTCGTATGGCCCGTCAGTGTGTGCACATTCG
CCTTGGTCCGCATGTCCCAGATGCGGGCAGTGGAATCGCGACCGGAGGTG
GCCAGCACATCGATGGTGGGATGCAGGGCCAGCGAGTAAACAGCCGATAA
GTGACCGTGATAATGCCGTATGACTTTGTTGTACTCCAGATCCCAGCACT
TGACCTGCCGATCCTCGCCGCAGCTAAACAGATACGGATGCTTCGTGCTG
ACGGCCACACCGCGCACAGTGCTCACATGACCGGTGAGCGAGAGCTTCAG
TTTGCCGCTGGCCAGGTCCCAGATCTTGATCACACGATCGCCAGCGCCGG
TGGCGAACCACTCGTTGCCG
BS06939.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1796-PA | 1449 | CG1796-RA | 547..1449 | 919..17 | 4515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango4-RA | 1620 | CG1796-RA | 639..1542 | 919..16 | 4520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12021765..12022668 | 919..16 | 4520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:43:34 has no hits.
BS06939.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:53 Download gff for
BS06939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1796-PA | 545..1449 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:23 Download gff for
BS06939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1796-PA | 545..1449 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:19 Download gff for
BS06939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango4-RA | 637..1549 | 6..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:05 Download gff for
BS06939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango4-RA | 637..1549 | 6..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:05 Download gff for
BS06939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12021763..12022675 | 6..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:19 Download gff for
BS06939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11915796..11916708 | 6..920 | 99 | | Minus |
BS06939.5prime Sequence
900 bp (801 high quality bases) assembled on 2005-12-04
> BS06939.5prime
GAAGTTATCAGTCGACATGGCCATGGAAGACGTGCAGAAGCACAGCGTGC
ACACGCTGATATTCCGCTCCCTGAAGCGCACCCACGATCTGTTCGTCTCC
AACCAGGGAAATCTGCCCGAAATCGACGAACGTTTAGAGAAGTTGCGACG
TTCCATCAAGGCGAAGGATGGCTATGGCCTTGTGCTGGACAAGGTGGCGA
AGATCGGCGAGGCCAGGAAGGCATCAGGAGCCCAAACGCCGGGCGACAAG
ACGCTGGCCATCACCGATGGCAGTGCAACGGATGCGGCCAGCGGTGCCGG
CAGTCTGGTTAAGTACAATGCGGGCGCCAGGCCAGCGGAGAAGACAGCGC
CACTGGTTACCGGCACACACACATCCCTGGTGCGCGCCTCCCTGGCGAAC
AGCAATGCAGATATGAGCGCCAATGGCGCCATCGCCAGCCATCTGCAATT
GATACCGAAGAAGGCGCCCAGCATACCCAAGCCCAAGTGGCACGCACCCT
GGAAACTGTCGCGCGTCATCTCCGGCCATTTGGGCTGGGTGCGATGCATC
GCCGTGGAGCCGGGCAACGAGTGGTTCGCCACCGGCGCTGGCGATCGTGT
GATCAAGATCTGGGACCTGGCCAGCGGCAAACTGAAGCTCTCGCTCACCG
GTCATGTGAGCACTGTGCGCGGTGTGGCCGTCAGCACGAAGCATCCGTAT
CTGTTTAGCTGCGGCGAGGATCGGCAGGTCAAGTGCTGGGATCTGGAGTA
CAACAAAGTCATACGGCATTATCACGGTCACTTATCGGCTGTTTACTCGC
TGGCCCTGCATCCCACCATCGATGTGCTGGCCACCTCCGGTCGCGATTCA
CTGCCCGCATCTGGNACATGCGGACCAAGGCGAATGTGCACACACTGACG
BS06939.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1796-PA | 1449 | CG1796-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
CG1796-PA | 1449 | CG1796-RA | 834..885 | 849..900 | 241 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango4-RA | 1620 | CG1796-RA | 93..977 | 17..900 | 4389 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12021338..12022103 | 136..900 | 3769 | 99.7 | Plus |
X | 23542271 | X | 12021160..12021278 | 17..135 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:26:52 has no hits.
BS06939.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:56:54 Download gff for
BS06939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1796-PA | 1..885 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:25 Download gff for
BS06939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1796-PA | 1..885 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:10:20 Download gff for
BS06939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango4-RA | 84..977 | 6..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:19 Download gff for
BS06939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango4-RA | 84..977 | 6..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:19 Download gff for
BS06939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12021151..12021278 | 6..135 | 96 | -> | Plus |
X | 12021338..12022103 | 136..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:10:20 Download gff for
BS06939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11915184..11915311 | 6..135 | 96 | -> | Plus |
arm_X | 11915371..11916136 | 136..900 | 99 | | Plus |
BS06939.complete Sequence
1481 bp (1481 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635671
> BS06939.complete
GAAGTTATCAGTCGACATGGCCATGGAAGACGTGCAGAAGCACAGCGTGC
ACACGCTGATATTCCGCTCCCTGAAGCGCACCCACGATCTGTTCGTCTCC
AACCAGGGAAATCTGCCCGAAATCGACGAACGTTTAGAGAAGTTGCGACG
TTCCATCAAGGCGAAGGATGGCTATGGCCTTGTGCTGGACAAGGTGGCGA
AGATCGGCGAGGCCAGGAAGGCATCAGGAGCCCAAACGCCGGGCGACAAG
ACGCTGGCCATCACCGATGGCAGTGCAACGGATGCGGCCAGCGGTGCCGG
CAGTCTGGTTAAGTACAATGCGGGCGCCAGGCCAGCGGAGAAGACAGCGC
CACTGGTTACCGGCACACACACATCCCTGGTGCGCGCCTCCCTGGCGAAC
AGCAATGCAGATATGAGCGCCAATGGCGCCATCGCCAGCCATCTGCAATT
GATACCGAAGAAGGCGCCCAGCATACCCAAGCCCAAGTGGCACGCACCCT
GGAAACTGTCGCGCGTCATCTCCGGCCATTTGGGCTGGGTGCGATGCATC
GCCGTGGAGCCGGGCAACGAGTGGTTCGCCACCGGCGCTGGCGATCGTGT
GATCAAGATCTGGGACCTGGCCAGCGGCAAACTGAAGCTCTCGCTCACCG
GTCATGTGAGCACTGTGCGCGGTGTGGCCGTCAGCACGAAGCATCCGTAT
CTGTTTAGCTGCGGCGAGGATCGGCAGGTCAAGTGCTGGGATCTGGAGTA
CAACAAAGTCATACGGCATTATCACGGTCACTTATCGGCTGTTTACTCGC
TGGCCCTGCATCCCACCATCGATGTGCTGGCCACCTCCGGTCGCGATTCC
ACTGCCCGCATCTGGGACATGCGGACCAAGGCGAATGTGCACACACTGAC
GGGCCATACGAACACGGTGGCCAGTGTGGTGGCGCAGGCCACCAATCCGC
AGATCATCACCGGCTCCCACGATTCCACGGTGCGTCTGTGGGATTTGGCC
GCCGGCAAGAGCGTCTGCACGCTAACCAATCACAAGAAGTCCGTGCGCAG
CATAGTCCTCCATCCATCGCTGTACATGTTCGCCTCCGCCTCGCCGGATA
ACATCAAGCAGTGGCGCTGTCCGGAGGGCAAGTTTGTGCAGAACATCTCC
GGCCACACGTCCATTGTCAATTGCATGGCGGCGAATAGTGAGGGCGTGCT
CGTTTCGGGCGGCGACAACGGCACGATGTTCTTTTGGGACTGGCGTACCG
GCTACAATTTCCAGCGGTTCCAAGCGCCCGTCCAACCGGGCTCCATGGAC
AGCGAGGCGGGCATATTCGCCATGTGCTTCGATCAATCGGGCAGCAGGCT
AATCACCGCCGAGGCGGACAAGACAATCAAAGTGTACAAGGAGGATGACG
AGGCCAGCGAGGAGTCGCATCCGATTAACTGGCGACCGGATCTACTGAAG
CGCCGCAAATTCTAGAAGCTTTCTAGACCAT
BS06939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango4-RA | 1449 | CG1796-PA | 1..1449 | 17..1465 | 7245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango4-RA | 1620 | CG1796-RA | 93..1542 | 17..1466 | 7250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12021338..12022668 | 136..1466 | 6655 | 100 | Plus |
X | 23542271 | X | 12021160..12021278 | 17..135 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:03:04 has no hits.
BS06939.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:35 Download gff for
BS06939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango4-RA | 1..1449 | 17..1465 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:14 Download gff for
BS06939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango4-RA | 88..1553 | 6..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:29 Download gff for
BS06939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango4-RA | 93..1541 | 17..1465 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:35 Download gff for
BS06939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango4-RA | 88..1553 | 6..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:32 Download gff for
BS06939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango4-RA | 93..1541 | 17..1465 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:32 Download gff for
BS06939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12021160..12021278 | 17..135 | 100 | -> | Plus |
X | 12021338..12022667 | 136..1465 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:29 Download gff for
BS06939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11915193..11915311 | 17..135 | 100 | -> | Plus |
arm_X | 11915371..11916700 | 136..1465 | 100 | | Plus |
BS06939.pep Sequence
Translation from 16 to 1464
> BS06939.pep
MAMEDVQKHSVHTLIFRSLKRTHDLFVSNQGNLPEIDERLEKLRRSIKAK
DGYGLVLDKVAKIGEARKASGAQTPGDKTLAITDGSATDAASGAGSLVKY
NAGARPAEKTAPLVTGTHTSLVRASLANSNADMSANGAIASHLQLIPKKA
PSIPKPKWHAPWKLSRVISGHLGWVRCIAVEPGNEWFATGAGDRVIKIWD
LASGKLKLSLTGHVSTVRGVAVSTKHPYLFSCGEDRQVKCWDLEYNKVIR
HYHGHLSAVYSLALHPTIDVLATSGRDSTARIWDMRTKANVHTLTGHTNT
VASVVAQATNPQIITGSHDSTVRLWDLAAGKSVCTLTNHKKSVRSIVLHP
SLYMFASASPDNIKQWRCPEGKFVQNISGHTSIVNCMAANSEGVLVSGGD
NGTMFFWDWRTGYNFQRFQAPVQPGSMDSEAGIFAMCFDQSGSRLITAEA
DKTIKVYKEDDEASEESHPINWRPDLLKRRKF*
BS06939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango4-PA | 482 | CG1796-PA | 1..482 | 1..482 | 2535 | 100 | Plus |
wds-PB | 361 | CG17437-PB | 17..360 | 106..460 | 352 | 26.3 | Plus |
wds-PA | 361 | CG17437-PA | 17..360 | 106..460 | 352 | 26.3 | Plus |
CG10931-PA | 345 | CG10931-PA | 46..300 | 162..411 | 288 | 27.3 | Plus |
Lis-1-PG | 411 | CG8440-PG | 88..409 | 148..458 | 284 | 27.5 | Plus |