Clone Sequence Records
BS06948.3prime Sequence
924 bp (769 high quality bases) assembled on 2005-12-04
> BS06948.3prime
ATGGTCTAGAAAGCTTTCAGTAGAAGTACTCGTACTTCTGGGCGTGGTGC
AGCATCACCTCCATCGACTTCTTGCCCTGCAGGACCCCATTTCGTTCCAT
ATAGTTCCAGATGGAGGCCATGAAGACGCAGAACAGGATCACGCCAAACA
CGATGAACTTGAGCAGCAGAAAGATAGTGCGCATGCCCACGGGGGCGGTG
AACTCCACCAGAAGGACCAAGAGGACAAACAGGAAGGTGGCGGCGCTGTA
GTACAGTATTCGATCAGTGTTTAACTGCAGCAGGGAAGCATCGCACAGCG
CCAGAGCTTCAAGAAGGGCAGCAGTTCTAGCGGCGGGCATGGATTGAATG
GAAGTGGAGCTTCCATTGCATTGGATCTCCGGCTGGTGTTGTGATGACTG
ATCGTCCTCTCCTGTCAAAGCATCCCCTGCTCCTACTTCCCTCACGGAAC
AGGTTTCACCATCCTCTACCAGGCAGTTCACCTCGATCGTTGCCACTGGC
TCCTCACTTCTAGGTTCCAGCTTGAATAACTTCAGCTTGGCCATCACCGC
CTCGTGGTCGGAGAAGCTAAATTTCTCGCCGGGTACTCGCTCCGGAAAAG
GCAGTTTGTATTCGGCTATCTCAGCATTTACATGATCGCCACCACGCACA
AAGATGTGATCGATACGGATACCCAGAGGATTTCTCTCCCGTGCTTGCTT
AGATGTGTATGAGTTGTGTTCGCATTCGTTGGTCCGAAAAGAGTCCGAGT
CGCAGCTGTCGAGCATCTTGGAGGTATAGAGCAGCACCTTGTAAGAGATG
TCCTGTGGCTGGGCATTCAGGTCGCCAGCCAGAATCTGCAGCGCAGAGTT
CCCCCCTGGTGGCTTCAATGAATTGAGCAGTATCGAAAGCCTGAATAACG
CGATGTGTCTTGTACTCGTCGTTG
BS06948.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-PA | 1329 | CG12034-RA | 491..1329 | 855..17 | 4195 | 100 | Minus |
| CG12034-PA | 1329 | CG12034-RA | 423..495 | 924..852 | 340 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-RA | 1684 | CG12034-RA | 571..1477 | 924..17 | 4500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3219812..3220718 | 924..17 | 4475 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-12 18:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3562..3664 | 70..174 | 133 | 60 | Plus |
BS06948.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:11 Download gff for
BS06948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-PA | 423..1329 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:50 Download gff for
BS06948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-PA | 423..1329 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:47 Download gff for
BS06948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 571..1486 | 7..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:10 Download gff for
BS06948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 571..1486 | 7..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:10 Download gff for
BS06948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3219812..3220727 | 7..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:47 Download gff for
BS06948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3219812..3220727 | 7..924 | 99 | | Minus |
BS06948.5prime Sequence
909 bp (788 high quality bases) assembled on 2005-12-04
> BS06948.5prime
GAAGTTATCAGTCGACATGTTGCTGCTGGAGCTGAACATTCTGACCCTGA
ATATATGGGGCATTCCGTATGTGTCGAGTGATCGCAGACCCCGCATCGAT
GCCATCTGCAAGGAGCTGGCTAGCGGGAAGTATGACATCGTGTCCCTGCA
GGAGGTGTGGGCGCAAGAGGACAGCGAGCTACTCCAAAAGGGCACGGAGG
CGGTCCTGCCCCATAGCCACTACTTTCACAGCGGCGTGATGGGCGCCGGT
CTGCTGGTACTGTCCAAGTACCCCATCCTGGGCACTCTGTTTCATGCGTG
GTCCGTAAATGGCTACTTCCACCGTATTCAGCATGCCGATTGGTTCGGCG
GCAAAGGTGTGGGCCTGTGCCGCATACTCGTCGGCGGGCAGATGGTGCAC
CTATATAATGCCCACCTGCACGCGGAGTACGACAATGCCAACGACGAGTA
CAAGACACATCGCGTTATTCAGGCCTTCGATACTGCTCAATTCATTGAAG
CCACCAGGGGGAACTCTGCGCTGCAGATTCTGGCTGGCGACCTGAATGCC
CAGCCACAGGACATCTCTTACAAGGTGCTGCTCTATACCTCCAAGATGCT
CGACAGCTGCGACTCGGACTCTTTTCGGACCAACGAATGCGAACACAACT
CATACACATCTAAGCAAGCACGGGAGAGAAATCCTCTGGGTATCCGTATC
GATCACATCTTTGTGCGTGGTGGCGATCATGTAAATGCTGAGATAGCCGA
ATACAAACTGCCTTTTCCGGAGCGAGTACCCGGCGAGAAATTTAGCTTCT
CCGACCCCGAGGCGGTGATGGCCAAGCTGAAGTTATTCAAGCTGGAACCT
AGAAGTGAGGAGCCAGTGGCAACGATCGAGGTGAACTGCCTGGTAGAGGA
TGGTGAAAC
BS06948.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-PA | 1329 | CG12034-RA | 1..893 | 17..909 | 4440 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-RA | 1684 | CG12034-RA | 142..1041 | 10..909 | 4455 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3219430..3220282 | 57..909 | 4250 | 99.9 | Plus |
| 3L | 28110227 | 3L | 3219297..3219345 | 10..58 | 215 | 95.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:45:35 has no hits.
BS06948.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:12 Download gff for
BS06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:41:52 Download gff for
BS06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:36:22 Download gff for
BS06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 142..1041 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:18:25 Download gff for
BS06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 142..1041 | 10..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:18:25 Download gff for
BS06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3219297..3219344 | 10..57 | 95 | -> | Plus |
| 3L | 3219431..3220282 | 58..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:36:22 Download gff for
BS06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3219297..3219344 | 10..57 | 95 | -> | Plus |
| arm_3L | 3219431..3220282 | 58..909 | 99 | | Plus |
BS06948.complete Sequence
1361 bp (1361 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635672
> BS06948.complete
GAAGTTATCAGTCGACATGTTGCTGCTGGAGCTGAACATTCTGACCCTGA
ATATATGGGGCATTCCGTATGTGTCGAGTGATCGCAGACCCCGCATCGAT
GCCATCTGCAAGGAGCTGGCTAGCGGGAAGTATGACATCGTGTCCCTGCA
GGAGGTGTGGGCGCAAGAGGACAGCGAGCTACTCCAAAAGGGCACGGAGG
CGGTCCTGCCCCATAGCCACTACTTTCACAGCGGCGTGATGGGCGCCGGT
CTGCTGGTACTGTCCAAGTACCCCATCCTGGGCACTCTGTTTCATGCGTG
GTCCGTAAATGGCTACTTCCACCGTATTCAGCATGCCGATTGGTTCGGCG
GCAAAGGTGTGGGCCTGTGCCGCATACTCGTCGGCGGGCAGATGGTGCAC
CTATATAATGCCCACCTGCACGCGGAGTACGACAATGCCAACGACGAGTA
CAAGACACATCGCGTTATTCAGGCCTTCGATACTGCTCAATTCATTGAAG
CCACCAGGGGGAACTCTGCGCTGCAGATTCTGGCTGGCGACCTGAATGCC
CAGCCACAGGACATCTCTTACAAGGTGCTGCTCTATACCTCCAAGATGCT
CGACAGCTGCGACTCGGACTCTTTTCGGACCAACGAATGCGAACACAACT
CATACACATCTAAGCAAGCACGGGAGAGAAATCCTCTGGGTATCCGTATC
GATCACATCTTTGTGCGTGGTGGCGATCATGTAAATGCTGAGATAGCCGA
ATACAAACTGCCTTTTCCGGAGCGAGTACCCGGCGAGAAATTTAGCTTCT
CCGACCACGAGGCGGTGATGGCCAAGCTGAAGTTATTCAAGCTGGAACCT
AGAAGTGAGGAGCCAGTGGCAACGATCGAGGTGAACTGCCTGGTAGAGGA
TGGTGAAACCTGTTCCGTGAGGGAAGTAGGAGCAGGGGATGCTTTGACAG
GAGAGGACGATCAGTCATCACAACACCAGCCGGAGATCCAATGCAATGGA
AGCTCCACTTCCATTCAATCCATGCCCGCCGCTAGAACTGCTGCCCTTCT
TGAAGCTCTGGCGCTGTGCGATGCTTCCCTGCTGCAGTTAAACACTGATC
GAATACTGTACTACAGCGCCGCCACCTTCCTGTTTGTCCTCTTGGTCCTT
CTGGTGGAGTTCACCGCCCCCGTGGGCATGCGCACTATCTTTCTGCTGCT
CAAGTTCATCGTGTTTGGCGTGATCCTGTTCTGCGTCTTCATGGCCTCCA
TCTGGAACTATATGGAACGAAATGGGGTCCTGCAGGGCAAGAAGTCGATG
GAGGTGATGCTGCACCACGCCCAGAAGTACGAGTACTTCTACTGAAAGCT
TTCTAGACCAT
BS06948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-RA | 1329 | CG12034-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-RA | 1684 | CG12034-RA | 142..1477 | 10..1345 | 6650 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3219430..3220718 | 57..1345 | 6445 | 100 | Plus |
| 3L | 28110227 | 3L | 3219297..3219345 | 10..58 | 215 | 95.9 | Plus |
Blast to na_te.dros performed 2014-11-27 16:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3562..3664 | 1292..1188 | 133 | 60 | Minus |
BS06948.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:36 Download gff for
BS06948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 1..1329 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:16 Download gff for
BS06948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 174..1518 | 10..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:14 Download gff for
BS06948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 154..1476 | 22..1344 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:37 Download gff for
BS06948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 174..1518 | 10..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:17 Download gff for
BS06948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 154..1476 | 22..1344 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:17 Download gff for
BS06948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3219309..3219344 | 22..57 | 100 | -> | Plus |
| 3L | 3219431..3220717 | 58..1344 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:14 Download gff for
BS06948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3219309..3219344 | 22..57 | 100 | -> | Plus |
| arm_3L | 3219431..3220717 | 58..1344 | 100 | | Plus |
BS06948.pep Sequence
Translation from 16 to 1344
> BS06948.pep
MLLLELNILTLNIWGIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQ
EDSELLQKGTEAVLPHSHYFHSGVMGAGLLVLSKYPILGTLFHAWSVNGY
FHRIQHADWFGGKGVGLCRILVGGQMVHLYNAHLHAEYDNANDEYKTHRV
IQAFDTAQFIEATRGNSALQILAGDLNAQPQDISYKVLLYTSKMLDSCDS
DSFRTNECEHNSYTSKQARERNPLGIRIDHIFVRGGDHVNAEIAEYKLPF
PERVPGEKFSFSDHEAVMAKLKLFKLEPRSEEPVATIEVNCLVEDGETCS
VREVGAGDALTGEDDQSSQHQPEIQCNGSSTSIQSMPAARTAALLEALAL
CDASLLQLNTDRILYYSAATFLFVLLVLLVEFTAPVGMRTIFLLLKFIVF
GVILFCVFMASIWNYMERNGVLQGKKSMEVMLHHAQKYEYFY*
BS06948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-PA | 442 | CG12034-PA | 1..442 | 1..442 | 2306 | 100 | Plus |
