Clone BS06952 Report

Search the DGRC for BS06952

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG7414-RA
Protein status:BS06952.pep: full length peptide match
Sequenced Size:1949

Clone Sequence Records

BS06952.3prime Sequence

795 bp (793 high quality bases) assembled on 2005-12-04

> BS06952.3prime
ATGGTCTAGAAAGCTTCTAGGCAGACTGCTTGAGAGCCTTGAGCTCATCC
AGGTACTGTGCTTCCATCTTAATCTTGTTCAGTTGGTTCAGCTCCAGATT
CTCGCCCTGGCTGCGTCGGACCTTCAGCTTCTTAATGTCCGACAGCTTCT
TGGCGACGCTGCGAATCTTGCGCTCCTTATCGCTGATGTGCTGGCCATTG
GGATGACCCTGTCCATACGAATTCGGTGGCTGATCGGCAGCGTTATCTGG
CTGGTACTTCTGTCTGGGAGTATGCTGCGGCTTCCGCTCCTCTGCAGCCA
CGAAAACGGGCGACTGGCGAGCAACCGGAGCAGCTTGATCGACCACCTCA
GTCGGGGCAGAATCCGCATCGCCACCATTTACAACGTTCACATCCTTCCT
AGCGCTTCGCTGTTTGTTCTTGTTATTCCTCTTGTTTCCGTTGACACCAC
CTGCTGCTGCCGTTGGTGCCAGTCCGGGAATACTCGGCTGGGGCAGATAC
TTTTCCGGATTCTTGCCCTCCTTCAACAAGCGCAGATGAGGCGGTGTGTA
AGCCTTCTTGCTGGCCTCTGGCTGGCTGGACTTGATGCCCTCGTGCTTGG
CCTTGGTAATCTTGGGCTCGCTGAACGTCTTATCCGCAAACTGCTGCCAC
TCAATTCCCAACAATTCCTGACCCTGGGGCCACATGGTCTCGTGGAGCAG
GGCCCCGGAGTAGTGGTACACCTTGAACCCATTGCTAATGCGCAGCCTGG
GCGCGGTGGTGGCCGTGACGAACCACTCGCCATTGGGATGCCACT

BS06952.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-PA 1917 CG7414-RA 1139..1917 795..17 3895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-RD 2319 CG7414-RD 1212..1990 795..17 3895 100 Minus
CG7414-RA 2544 CG7414-RA 1437..2215 795..17 3895 100 Minus
CG7414-RE 2602 CG7414-RE 1840..2273 450..17 2170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21827090..21827527 454..17 2190 100 Minus
3L 28110227 3L 21826474..21826754 729..449 1405 100 Minus
3L 28110227 3L 21826348..21826416 795..727 345 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:21:41 has no hits.

BS06952.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:20 Download gff for BS06952.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-PA 1139..1917 17..795 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:02 Download gff for BS06952.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-PA 1139..1917 17..795 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:55 Download gff for BS06952.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 1437..2218 14..795 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:51:16 Download gff for BS06952.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 1437..2218 14..795 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:51:16 Download gff for BS06952.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21826348..21826414 729..795 100 -> Minus
3L 21826475..21826752 451..728 100 -> Minus
3L 21827094..21827530 14..450 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:55 Download gff for BS06952.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21819448..21819514 729..795 100 -> Minus
arm_3L 21819575..21819852 451..728 100 -> Minus
arm_3L 21820194..21820630 14..450 99   Minus

BS06952.5prime Sequence

843 bp (701 high quality bases) assembled on 2005-12-04

> BS06952.5prime
GAAGTTATCAGTCGACATGGCTGCAGCTGCGGATCTGGTTGTTCCTACCC
TTGCCATTCGCTCTAGCGTGGCCGTGGAATTGTGGTCCTCGGCGGGCTCC
AAGCAGCCCTTCGAGCACAAGCCCCACCTGCCGCGCGAGGAGACGAAGAG
CTCGCGCTCGATCTGCTTCAGCTCCAACGGCCGGTACTTCGCCTACTCCA
ACGGGCAGGAAGTCAAGGTGCTCCAGGCCAGCCGGGACAGCGCAGCCAGC
TGGCCAGTGATATGCGTGCTGCCCAGGCCGAAAGCCTTCTACCTCCAATT
CTCGCCACGTGGCAGCTACCTGTGCACCTGGGAGCACTATGCCATCACTA
AGGACCGGCCGGAGGGGTCACCCAATCTGCTCGTCTACGAAGTGGCCACC
GGTGTCGAAGTGTTTGCCATCGTCCAGAAGAACCAAGCGGACTGGCAGCC
CTCCTGGTCGGCGGACGAGTCCATCTTCGCTTTGGTAGTCGGCGGCGAGG
CACTCTTCTATGACCTCGGCGAGGGAGCGGAGAAGGGATTCGCCACCACA
TCGCGCAAGATAGGAGGCAGTCGCGGCGGTATGCTGTCGCTGGGTCCCGG
TAACTGCCCCCCGTTCCTTGCGTTCTACACGCCGGGAGCCAAGGGCGCTC
CGTCCATGTGCAAGCTCTACAAGTACCCGGCGCTTGGCCAGAATCAGACC
GTAGCCTGCAAGAGCTTTTTCCAGGCGGATCGCGTCGAGATGTTGTGGAA
CAAGCGAGGCAGCGGACTGCTTCTCCTAACCAGCACGGAAGTGGATAAGA
GCGGTGCCTCCTACTACGGCAACCAGGCGGTGCACTTCATGGC

BS06952.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-PA 1917 CG7414-RA 1..827 17..843 4135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-RE 2602 CG7414-RE 74..900 17..843 4135 100 Plus
CG7414-RD 2319 CG7414-RD 74..900 17..843 4135 100 Plus
CG7414-RC 2827 CG7414-RC 299..1125 17..843 4135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21825250..21826036 57..843 3935 100 Plus
3L 28110227 3L 21825038..21825077 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:37:29 has no hits.

BS06952.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:21 Download gff for BS06952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:03 Download gff for BS06952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:42:01 Download gff for BS06952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-RC 294..1125 10..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:06 Download gff for BS06952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-RC 294..1125 10..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:06 Download gff for BS06952.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21825033..21825077 10..56 93 -> Plus
3L 21825250..21826036 57..843 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:42:01 Download gff for BS06952.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21818133..21818177 10..56 93 -> Plus
arm_3L 21818350..21819136 57..843 100   Plus

BS06952.complete Sequence

1949 bp assembled on 2009-08-24

GenBank Submission: KX803500

> BS06952.complete
GAAGTTATCAGTCGACATGGCTGCAGCTGCGGATCTGGTTGTTCCTACCC
TTGCCATTCGCTCTAGCGTGGCCGTGGAATTGTGGTCCTCGGCGGGCTCC
AAGCAGCCCTTCGAGCACAAGCCCCACCTGCCGCGCGAGGAGACGAAGAG
CTCGCGCTCGATCTGCTTCAGCTCCAACGGCCGGTACTTCGCCTACTCCA
ACGGGCAGGAAGTCAAGGTGCTCCAGGCCAGCCGGGACAGCGCAGCCAGC
TGGCCAGTGATATGCGTGCTGCCCAGGCCGAAAGCCTTCTACCTCCAATT
CTCGCCACGTGGCAGCTACCTGTGCACCTGGGAGCACTATGCCATCACTA
AGGACCGGCCGGAGGGGTCACCCAATCTGCTCGTCTACGAAGTGGCCACC
GGTGTCGAAGTGTTTGCCATCGTCCAGAAGAACCAAGCGGACTGGCAGCC
CTCCTGGTCGGCGGACGAGTCCATCTTCGCTTTGGTAGTCGGCGGCGAGG
CACTCTTCTATGACCTCGGCGAGGGAGCGGAGAAGGGATTCGCCACCACA
TCGCGCAAGATAGGAGGCAGTCGCGGCGGTATGCTGTCGCTGGGTCCCGG
TAACTGCCCCCCGTTCCTTGCGTTCTACACGCCGGGAGCCAAGGGCGCTC
CGTCCATGTGCAAGCTCTACAAGTACCCGGCGCTTGGCCAGAATCAGACC
GTAGCCTGCAAGAGCTTTTTCCAGGCGGATCGCGTCGAGATGTTGTGGAA
CAAGCGAGGCAGCGGACTGCTTCTCCTAACCAGCACGGAAGTGGATAAGA
GCGGTGCCTCCTACTACGGCAACCAGGCGGTGCACTTCATGGCAACCAAG
GGCGACACCTGCTCAGTGCCCCTCTCTAAGGAGGGACCGGTGCATTGTGT
CAAGTGGAGTCCTAAGGCAACTGAGTTTGTAGTCGTATACGGCTTCATGC
CATCCAAGGCTGCTCTCTACAACCTCAAGTGCGACGTAGTCTTCGACTTC
GGTGAGGGTCCACGCAACTGTGCCTACTTCAATCCATTTGGCAACCTCAT
AGCTCTCGCCGGCTTCGGCAATCTGCCTGGAGCCGTCGAGGTGTGGGATG
TGTCCAAGCGCGAGAAGCTGGCTAACCTCAAGTGTGCTGATACCACGGTT
TTTGAGTGGCATCCCAATGGCGAGTGGTTCGTCACGGCCACCACCGCGCC
CAGGCTGCGCATTAGCAATGGGTTCAAGGTGTACCACTACTCCGGGGCCC
TGCTCCACGAGACCATGTGGCCCCAGGGTCAGGAATTGTTGGGAATTGAG
TGGCAGCAGTTTGCGGATAAGACGTTCAGCGAGCCCAAGATTACCAAGGC
CAAGCACGAGGGCATCAAGTCCAGCCAGCCAGAGGCCAGCAAGAAGGCTT
ACACACCGCCTCATCTGCGCTTGTTGAAGGAGGGCAAGAATCCGGAAAAG
TATCTGCCCCAGCCGAGTATTCCCGGACTGGCACCAACGGCAGCAGCAGG
TGGTGTCAACGGAAACAAGAGGAATAACAAGAACAAACAGCGAAGCGCTA
GGAAGGATGTGAACGTTGTAAATGGTGGCGATGCGGATTCTGCCCCGACT
GAGGTGGTCGATCAAGCTGCTCCGGTTGCTCGCCAGTCGCCCGTTTTCGT
GGCTGCAGAGGAGCGGAAGCCGCAGCATACTCCCAGACAGAAGTACCAGC
CAGATAACGCTGCCGATCAGCCACCGAATTCGTATGGACAGGGTCATCCC
AATGGCCAGCACATCAGCGATAAGGAGCGCAAGATTCGCAGCGTCGCCAA
GAAGCTGTCGGACATTAAGAAGCTGAAGGTCCGACGCAGCCAGGGCGAGA
ATCTGGAGCTGAACCAACTGAACAAGATTAAGATGGAAGCACAGTACCTG
GATGAGCTCAAGGCTCTCAAGCAGTCTGCCTAGAAGCTTTCTAGACCAT

BS06952.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-RD 1917 CG7414-PD 1..1917 17..1933 9585 100 Plus
CG7414-RA 1917 CG7414-PA 1..1917 17..1933 9585 100 Plus
CG7414-RE 1668 CG7414-PE 1..1485 17..1501 7425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-RD 2319 CG7414-RD 74..1990 17..1933 9585 100 Plus
CG7414-RA 2544 CG7414-RA 299..2215 17..1933 9585 100 Plus
CG7414-RE 2602 CG7414-RE 74..1558 17..1501 7425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21825250..21826416 57..1223 5835 100 Plus
3L 28110227 3L 21827090..21827527 1496..1933 2190 100 Plus
3L 28110227 3L 21826474..21826754 1221..1501 1405 100 Plus
3L 28110227 3L 21825038..21825077 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:32:58 has no hits.

BS06952.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:56 Download gff for BS06952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 220..2136 17..1933 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:46 Download gff for BS06952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 299..2215 17..1933 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:13 Download gff for BS06952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 299..2215 17..1933 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:13 Download gff for BS06952.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21825038..21825077 17..56 100 -> Plus
3L 21825250..21826414 57..1221 100 -> Plus
3L 21826475..21826752 1222..1499 100 -> Plus
3L 21827094..21827527 1500..1933 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:46 Download gff for BS06952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21818138..21818177 17..56 100 -> Plus
arm_3L 21818350..21819514 57..1221 100 -> Plus
arm_3L 21819575..21819852 1222..1499 100 -> Plus
arm_3L 21820194..21820627 1500..1933 100   Plus

BS06952.pep Sequence

Translation from 16 to 1932

> BS06952.pep
MAAAADLVVPTLAIRSSVAVELWSSAGSKQPFEHKPHLPREETKSSRSIC
FSSNGRYFAYSNGQEVKVLQASRDSAASWPVICVLPRPKAFYLQFSPRGS
YLCTWEHYAITKDRPEGSPNLLVYEVATGVEVFAIVQKNQADWQPSWSAD
ESIFALVVGGEALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPF
LAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRVEMLWNKRGSG
LLLLTSTEVDKSGASYYGNQAVHFMATKGDTCSVPLSKEGPVHCVKWSPK
ATEFVVVYGFMPSKAALYNLKCDVVFDFGEGPRNCAYFNPFGNLIALAGF
GNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRIS
NGFKVYHYSGALLHETMWPQGQELLGIEWQQFADKTFSEPKITKAKHEGI
KSSQPEASKKAYTPPHLRLLKEGKNPEKYLPQPSIPGLAPTAAAGGVNGN
KRNNKNKQRSARKDVNVVNGGDADSAPTEVVDQAAPVARQSPVFVAAEER
KPQHTPRQKYQPDNAADQPPNSYGQGHPNGQHISDKERKIRSVAKKLSDI
KKLKVRRSQGENLELNQLNKIKMEAQYLDELKALKQSA*

BS06952.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-PD 638 CG7414-PD 1..638 1..638 3385 100 Plus
CG7414-PA 638 CG7414-PA 1..638 1..638 3385 100 Plus
CG7414-PE 555 CG7414-PE 1..495 1..495 2652 100 Plus
CG7414-PC 555 CG7414-PC 1..495 1..495 2652 100 Plus