Clone Sequence Records
BS06952.3prime Sequence
795 bp (793 high quality bases) assembled on 2005-12-04
> BS06952.3prime
ATGGTCTAGAAAGCTTCTAGGCAGACTGCTTGAGAGCCTTGAGCTCATCC
AGGTACTGTGCTTCCATCTTAATCTTGTTCAGTTGGTTCAGCTCCAGATT
CTCGCCCTGGCTGCGTCGGACCTTCAGCTTCTTAATGTCCGACAGCTTCT
TGGCGACGCTGCGAATCTTGCGCTCCTTATCGCTGATGTGCTGGCCATTG
GGATGACCCTGTCCATACGAATTCGGTGGCTGATCGGCAGCGTTATCTGG
CTGGTACTTCTGTCTGGGAGTATGCTGCGGCTTCCGCTCCTCTGCAGCCA
CGAAAACGGGCGACTGGCGAGCAACCGGAGCAGCTTGATCGACCACCTCA
GTCGGGGCAGAATCCGCATCGCCACCATTTACAACGTTCACATCCTTCCT
AGCGCTTCGCTGTTTGTTCTTGTTATTCCTCTTGTTTCCGTTGACACCAC
CTGCTGCTGCCGTTGGTGCCAGTCCGGGAATACTCGGCTGGGGCAGATAC
TTTTCCGGATTCTTGCCCTCCTTCAACAAGCGCAGATGAGGCGGTGTGTA
AGCCTTCTTGCTGGCCTCTGGCTGGCTGGACTTGATGCCCTCGTGCTTGG
CCTTGGTAATCTTGGGCTCGCTGAACGTCTTATCCGCAAACTGCTGCCAC
TCAATTCCCAACAATTCCTGACCCTGGGGCCACATGGTCTCGTGGAGCAG
GGCCCCGGAGTAGTGGTACACCTTGAACCCATTGCTAATGCGCAGCCTGG
GCGCGGTGGTGGCCGTGACGAACCACTCGCCATTGGGATGCCACT
BS06952.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-PA | 1917 | CG7414-RA | 1139..1917 | 795..17 | 3895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-RD | 2319 | CG7414-RD | 1212..1990 | 795..17 | 3895 | 100 | Minus |
CG7414-RA | 2544 | CG7414-RA | 1437..2215 | 795..17 | 3895 | 100 | Minus |
CG7414-RE | 2602 | CG7414-RE | 1840..2273 | 450..17 | 2170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21827090..21827527 | 454..17 | 2190 | 100 | Minus |
3L | 28110227 | 3L | 21826474..21826754 | 729..449 | 1405 | 100 | Minus |
3L | 28110227 | 3L | 21826348..21826416 | 795..727 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:21:41 has no hits.
BS06952.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:20 Download gff for
BS06952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-PA | 1139..1917 | 17..795 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:02 Download gff for
BS06952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-PA | 1139..1917 | 17..795 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:55 Download gff for
BS06952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 1437..2218 | 14..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:51:16 Download gff for
BS06952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 1437..2218 | 14..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:51:16 Download gff for
BS06952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21826348..21826414 | 729..795 | 100 | -> | Minus |
3L | 21826475..21826752 | 451..728 | 100 | -> | Minus |
3L | 21827094..21827530 | 14..450 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:55 Download gff for
BS06952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21819448..21819514 | 729..795 | 100 | -> | Minus |
arm_3L | 21819575..21819852 | 451..728 | 100 | -> | Minus |
arm_3L | 21820194..21820630 | 14..450 | 99 | | Minus |
BS06952.5prime Sequence
843 bp (701 high quality bases) assembled on 2005-12-04
> BS06952.5prime
GAAGTTATCAGTCGACATGGCTGCAGCTGCGGATCTGGTTGTTCCTACCC
TTGCCATTCGCTCTAGCGTGGCCGTGGAATTGTGGTCCTCGGCGGGCTCC
AAGCAGCCCTTCGAGCACAAGCCCCACCTGCCGCGCGAGGAGACGAAGAG
CTCGCGCTCGATCTGCTTCAGCTCCAACGGCCGGTACTTCGCCTACTCCA
ACGGGCAGGAAGTCAAGGTGCTCCAGGCCAGCCGGGACAGCGCAGCCAGC
TGGCCAGTGATATGCGTGCTGCCCAGGCCGAAAGCCTTCTACCTCCAATT
CTCGCCACGTGGCAGCTACCTGTGCACCTGGGAGCACTATGCCATCACTA
AGGACCGGCCGGAGGGGTCACCCAATCTGCTCGTCTACGAAGTGGCCACC
GGTGTCGAAGTGTTTGCCATCGTCCAGAAGAACCAAGCGGACTGGCAGCC
CTCCTGGTCGGCGGACGAGTCCATCTTCGCTTTGGTAGTCGGCGGCGAGG
CACTCTTCTATGACCTCGGCGAGGGAGCGGAGAAGGGATTCGCCACCACA
TCGCGCAAGATAGGAGGCAGTCGCGGCGGTATGCTGTCGCTGGGTCCCGG
TAACTGCCCCCCGTTCCTTGCGTTCTACACGCCGGGAGCCAAGGGCGCTC
CGTCCATGTGCAAGCTCTACAAGTACCCGGCGCTTGGCCAGAATCAGACC
GTAGCCTGCAAGAGCTTTTTCCAGGCGGATCGCGTCGAGATGTTGTGGAA
CAAGCGAGGCAGCGGACTGCTTCTCCTAACCAGCACGGAAGTGGATAAGA
GCGGTGCCTCCTACTACGGCAACCAGGCGGTGCACTTCATGGC
BS06952.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-PA | 1917 | CG7414-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-RE | 2602 | CG7414-RE | 74..900 | 17..843 | 4135 | 100 | Plus |
CG7414-RD | 2319 | CG7414-RD | 74..900 | 17..843 | 4135 | 100 | Plus |
CG7414-RC | 2827 | CG7414-RC | 299..1125 | 17..843 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21825250..21826036 | 57..843 | 3935 | 100 | Plus |
3L | 28110227 | 3L | 21825038..21825077 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:37:29 has no hits.
BS06952.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:21 Download gff for
BS06952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:03 Download gff for
BS06952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:42:01 Download gff for
BS06952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RC | 294..1125 | 10..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:06 Download gff for
BS06952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RC | 294..1125 | 10..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:06 Download gff for
BS06952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21825033..21825077 | 10..56 | 93 | -> | Plus |
3L | 21825250..21826036 | 57..843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:42:01 Download gff for
BS06952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21818133..21818177 | 10..56 | 93 | -> | Plus |
arm_3L | 21818350..21819136 | 57..843 | 100 | | Plus |
BS06952.complete Sequence
1949 bp assembled on 2009-08-24
GenBank Submission: KX803500
> BS06952.complete
GAAGTTATCAGTCGACATGGCTGCAGCTGCGGATCTGGTTGTTCCTACCC
TTGCCATTCGCTCTAGCGTGGCCGTGGAATTGTGGTCCTCGGCGGGCTCC
AAGCAGCCCTTCGAGCACAAGCCCCACCTGCCGCGCGAGGAGACGAAGAG
CTCGCGCTCGATCTGCTTCAGCTCCAACGGCCGGTACTTCGCCTACTCCA
ACGGGCAGGAAGTCAAGGTGCTCCAGGCCAGCCGGGACAGCGCAGCCAGC
TGGCCAGTGATATGCGTGCTGCCCAGGCCGAAAGCCTTCTACCTCCAATT
CTCGCCACGTGGCAGCTACCTGTGCACCTGGGAGCACTATGCCATCACTA
AGGACCGGCCGGAGGGGTCACCCAATCTGCTCGTCTACGAAGTGGCCACC
GGTGTCGAAGTGTTTGCCATCGTCCAGAAGAACCAAGCGGACTGGCAGCC
CTCCTGGTCGGCGGACGAGTCCATCTTCGCTTTGGTAGTCGGCGGCGAGG
CACTCTTCTATGACCTCGGCGAGGGAGCGGAGAAGGGATTCGCCACCACA
TCGCGCAAGATAGGAGGCAGTCGCGGCGGTATGCTGTCGCTGGGTCCCGG
TAACTGCCCCCCGTTCCTTGCGTTCTACACGCCGGGAGCCAAGGGCGCTC
CGTCCATGTGCAAGCTCTACAAGTACCCGGCGCTTGGCCAGAATCAGACC
GTAGCCTGCAAGAGCTTTTTCCAGGCGGATCGCGTCGAGATGTTGTGGAA
CAAGCGAGGCAGCGGACTGCTTCTCCTAACCAGCACGGAAGTGGATAAGA
GCGGTGCCTCCTACTACGGCAACCAGGCGGTGCACTTCATGGCAACCAAG
GGCGACACCTGCTCAGTGCCCCTCTCTAAGGAGGGACCGGTGCATTGTGT
CAAGTGGAGTCCTAAGGCAACTGAGTTTGTAGTCGTATACGGCTTCATGC
CATCCAAGGCTGCTCTCTACAACCTCAAGTGCGACGTAGTCTTCGACTTC
GGTGAGGGTCCACGCAACTGTGCCTACTTCAATCCATTTGGCAACCTCAT
AGCTCTCGCCGGCTTCGGCAATCTGCCTGGAGCCGTCGAGGTGTGGGATG
TGTCCAAGCGCGAGAAGCTGGCTAACCTCAAGTGTGCTGATACCACGGTT
TTTGAGTGGCATCCCAATGGCGAGTGGTTCGTCACGGCCACCACCGCGCC
CAGGCTGCGCATTAGCAATGGGTTCAAGGTGTACCACTACTCCGGGGCCC
TGCTCCACGAGACCATGTGGCCCCAGGGTCAGGAATTGTTGGGAATTGAG
TGGCAGCAGTTTGCGGATAAGACGTTCAGCGAGCCCAAGATTACCAAGGC
CAAGCACGAGGGCATCAAGTCCAGCCAGCCAGAGGCCAGCAAGAAGGCTT
ACACACCGCCTCATCTGCGCTTGTTGAAGGAGGGCAAGAATCCGGAAAAG
TATCTGCCCCAGCCGAGTATTCCCGGACTGGCACCAACGGCAGCAGCAGG
TGGTGTCAACGGAAACAAGAGGAATAACAAGAACAAACAGCGAAGCGCTA
GGAAGGATGTGAACGTTGTAAATGGTGGCGATGCGGATTCTGCCCCGACT
GAGGTGGTCGATCAAGCTGCTCCGGTTGCTCGCCAGTCGCCCGTTTTCGT
GGCTGCAGAGGAGCGGAAGCCGCAGCATACTCCCAGACAGAAGTACCAGC
CAGATAACGCTGCCGATCAGCCACCGAATTCGTATGGACAGGGTCATCCC
AATGGCCAGCACATCAGCGATAAGGAGCGCAAGATTCGCAGCGTCGCCAA
GAAGCTGTCGGACATTAAGAAGCTGAAGGTCCGACGCAGCCAGGGCGAGA
ATCTGGAGCTGAACCAACTGAACAAGATTAAGATGGAAGCACAGTACCTG
GATGAGCTCAAGGCTCTCAAGCAGTCTGCCTAGAAGCTTTCTAGACCAT
BS06952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-RD | 1917 | CG7414-PD | 1..1917 | 17..1933 | 9585 | 100 | Plus |
CG7414-RA | 1917 | CG7414-PA | 1..1917 | 17..1933 | 9585 | 100 | Plus |
CG7414-RE | 1668 | CG7414-PE | 1..1485 | 17..1501 | 7425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-RD | 2319 | CG7414-RD | 74..1990 | 17..1933 | 9585 | 100 | Plus |
CG7414-RA | 2544 | CG7414-RA | 299..2215 | 17..1933 | 9585 | 100 | Plus |
CG7414-RE | 2602 | CG7414-RE | 74..1558 | 17..1501 | 7425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21825250..21826416 | 57..1223 | 5835 | 100 | Plus |
3L | 28110227 | 3L | 21827090..21827527 | 1496..1933 | 2190 | 100 | Plus |
3L | 28110227 | 3L | 21826474..21826754 | 1221..1501 | 1405 | 100 | Plus |
3L | 28110227 | 3L | 21825038..21825077 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:32:58 has no hits.
BS06952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:56 Download gff for
BS06952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 220..2136 | 17..1933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:46 Download gff for
BS06952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 299..2215 | 17..1933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:13 Download gff for
BS06952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 299..2215 | 17..1933 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:13 Download gff for
BS06952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21825038..21825077 | 17..56 | 100 | -> | Plus |
3L | 21825250..21826414 | 57..1221 | 100 | -> | Plus |
3L | 21826475..21826752 | 1222..1499 | 100 | -> | Plus |
3L | 21827094..21827527 | 1500..1933 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:46 Download gff for
BS06952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21818138..21818177 | 17..56 | 100 | -> | Plus |
arm_3L | 21818350..21819514 | 57..1221 | 100 | -> | Plus |
arm_3L | 21819575..21819852 | 1222..1499 | 100 | -> | Plus |
arm_3L | 21820194..21820627 | 1500..1933 | 100 | | Plus |
BS06952.pep Sequence
Translation from 16 to 1932
> BS06952.pep
MAAAADLVVPTLAIRSSVAVELWSSAGSKQPFEHKPHLPREETKSSRSIC
FSSNGRYFAYSNGQEVKVLQASRDSAASWPVICVLPRPKAFYLQFSPRGS
YLCTWEHYAITKDRPEGSPNLLVYEVATGVEVFAIVQKNQADWQPSWSAD
ESIFALVVGGEALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPF
LAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRVEMLWNKRGSG
LLLLTSTEVDKSGASYYGNQAVHFMATKGDTCSVPLSKEGPVHCVKWSPK
ATEFVVVYGFMPSKAALYNLKCDVVFDFGEGPRNCAYFNPFGNLIALAGF
GNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRIS
NGFKVYHYSGALLHETMWPQGQELLGIEWQQFADKTFSEPKITKAKHEGI
KSSQPEASKKAYTPPHLRLLKEGKNPEKYLPQPSIPGLAPTAAAGGVNGN
KRNNKNKQRSARKDVNVVNGGDADSAPTEVVDQAAPVARQSPVFVAAEER
KPQHTPRQKYQPDNAADQPPNSYGQGHPNGQHISDKERKIRSVAKKLSDI
KKLKVRRSQGENLELNQLNKIKMEAQYLDELKALKQSA*
BS06952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-PD | 638 | CG7414-PD | 1..638 | 1..638 | 3385 | 100 | Plus |
CG7414-PA | 638 | CG7414-PA | 1..638 | 1..638 | 3385 | 100 | Plus |
CG7414-PE | 555 | CG7414-PE | 1..495 | 1..495 | 2652 | 100 | Plus |
CG7414-PC | 555 | CG7414-PC | 1..495 | 1..495 | 2652 | 100 | Plus |