Clone Sequence Records
BS06953.3prime Sequence
778 bp (777 high quality bases) assembled on 2005-12-04
> BS06953.3prime
ATGGTCTAGAAAGCTTTTATTTAAATTTACGAATACCCGTTGGCAGCGTA
GTGCAATGATGCTGATACATTTGCAGAAGAAAGATTGTATCGTCTAGGGT
CAGTTCAGCTTTTGACAAGGTCTTTATGCGATTTTTCACCTTATTAAGGA
TCTCGCATTCCGGCGGCGTGAAAGTCTCAACAATCTCTGCGATATACTCG
TCCGTCTCTCCACGTTCCTTCATGGCCTCTACGATGCTGTCCAGCCTTTG
TGATTTTTCAATTAGGCCCTTGTGCTCATTTTTTTCGAAGTTAGATCGCT
CTATTGTGTTATAAAGGGATTTGTAGCTGGCATCAAGCAGCATTCTCACG
GTATCTTTCTCCTTGACCTGGAAGAGGTAAAATGCCTTTGCGGGGCCATT
ACTGCCTCCGCCAGGCTTCTTAATAATCTTGACATGAATAAACTGTTCCT
GGAACAAATTATACGCCAGCGACTTGGCCTCTTTGGATGGGATCATGGCC
TCCTTTTGCAGGTCCTCCTGTTCTATGTATTTCTTGCATCGAATCACTCG
AAATATTCGGGCTGCCTTTGAGCCAAATCGTTCCGTGATGACACACTCCA
CACAAGCAAAGGCCAGCGACTCGAAGGCATGTTCCATATCCACCACATAC
ACACCACCACCCATGTCGCCAACTCTTCGAAAGAATCCCAGTGAGTCCTC
AGTCAATAGGCTTATGTACTGGTCCAAGTACTTCATGAGATCCAGGTTAT
TCGATTTTCTTTCAATAGCCTGTTTAAT
BS06953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12267-PA | 1569 | CG12267-RA | 808..1569 | 778..17 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12267-RB | 1650 | CG12267-RB | 873..1635 | 778..16 | 3815 | 100 | Minus |
| CG12267-RA | 1592 | CG12267-RA | 815..1577 | 778..16 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12461601..12461950 | 702..353 | 1750 | 100 | Minus |
| 3R | 32079331 | 3R | 12462233..12462403 | 186..16 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 12462009..12462176 | 352..185 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 12461468..12461548 | 778..698 | 390 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:45:10 has no hits.
BS06953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:22 Download gff for
BS06953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-PA | 808..1569 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:04 Download gff for
BS06953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-PA | 808..1569 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:05:37 Download gff for
BS06953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 815..1579 | 11..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:18:04 Download gff for
BS06953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 815..1579 | 11..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:18:04 Download gff for
BS06953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12461468..12461543 | 703..778 | 100 | -> | Minus |
| 3R | 12461601..12461950 | 353..702 | 100 | -> | Minus |
| 3R | 12462009..12462176 | 185..352 | 100 | -> | Minus |
| 3R | 12462235..12462405 | 11..184 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:05:37 Download gff for
BS06953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8287190..8287265 | 703..778 | 100 | -> | Minus |
| arm_3R | 8287323..8287672 | 353..702 | 100 | -> | Minus |
| arm_3R | 8287731..8287898 | 185..352 | 100 | -> | Minus |
| arm_3R | 8287957..8288127 | 11..184 | 98 | | Minus |
BS06953.5prime Sequence
785 bp (784 high quality bases) assembled on 2005-12-04
> BS06953.5prime
GAAGTTATCAGTCGACATGTCAGCCGACTACTCCCATCTGAGCTCCGCCA
TCCTGGAGCAGTGCTTTGGCAAGGTGGTGCAGGCGGTGGCCGACTGCCTC
TTTTCGGCCACCACGAGGACCCTGGGACAGATCACCAGTGCCACCAAGTT
GTCGAGGAAGGAAGTGGCATTTGCGCTGGCGGTGCTGGTCAAGTTCAGGC
TGGTGGACTTTGCCGCCTCCAAGGCAAACCCCTTCCTGGCGGAGTACGCC
CTCCGGCGCGAGGATGTTCTCTGCCTCCTAAGGTATCCTCGTTACGTTCA
CCTGGTGCAAACCAAGTACGGAAATGTGGGTGCTTCCATTTCGGAGGAGT
TGATTAATTCTGGATCCGATACGGCAACTGGAATTCTGCTAAAATGCCTA
GCCGAGAATGAAAACAAGGCAGAAAGTCCGGAGTCCTACCGCAACACCTT
TCTCGAAATGATCACCGATCACTATATCATCAAGAGACCAGAACTGCTGG
TGGGCGACGACCAGGATGAGAATGTGCCAAAGTTTGAGACCAACGAGTGC
GATTTCTTTAGGCATCCCAATATTGATCTTCAGTTGCTGGCCAAGATACA
AAAAGGAGAAGCCACTCTAGCGGAGGCCAGGGATTCTCACATGGTGTGGC
ACCTGAACCACGATCGCTTTCATCAAGACTTTCGAGACACCATCATGGTG
GATGCTATTGAGCGAAAACTGGGTGAAAATGCTGCAGAGTGCTTCAAATT
CATATTAAAGATTATGTATAACACAACTGATCCGT
BS06953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12267-PA | 1569 | CG12267-RA | 1..769 | 17..785 | 3845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12267-RB | 1650 | CG12267-RB | 65..834 | 16..785 | 3850 | 100 | Plus |
| CG12267-RA | 1592 | CG12267-RA | 7..776 | 16..785 | 3850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12460872..12461366 | 291..785 | 2475 | 100 | Plus |
| 3R | 32079331 | 3R | 12460528..12460803 | 16..291 | 1380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:03:53 has no hits.
BS06953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:23 Download gff for
BS06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-PA | 1..769 | 17..785 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:06 Download gff for
BS06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-PA | 1..769 | 17..785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:35:42 Download gff for
BS06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 3..776 | 14..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:44:15 Download gff for
BS06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 3..776 | 14..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:44:15 Download gff for
BS06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12460528..12460803 | 16..291 | 100 | -> | Plus |
| 3R | 12460873..12461366 | 292..785 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:35:42 Download gff for
BS06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8286250..8286525 | 16..291 | 100 | -> | Plus |
| arm_3R | 8286595..8287088 | 292..785 | 100 | | Plus |
BS06953.complete Sequence
1601 bp assembled on 2007-10-26
GenBank Submission: FJ635673
> BS06953.complete
GAAGTTATCAGTCGACATGTCAGCCGACTACTCCCATCTGAGCTCCGCCA
TCCTGGAGCAGTGCTTTGGCAAGGTGGTGCAGGCGGTGGCCGACTGCCTC
TTTTCGGCCACCACGAGGACCCTGGGACAGATCACCAGTGCCACCAAGTT
GTCGAGGAAGGAAGTGGCATTTGCGCTGGCGGTGCTGGTCAAGTTCAGGC
TGGTGGACTTTGCCGCCTCCAAGGCAAACCCCTTCCTGGCGGAGTACGCC
CTCCGGCGCGAGGATGTTCTCTGCCTCCTAAGGTATCCTCGTTACGTTCA
CCTGGTGCAAACCAAGTACGGAAATGTGGGTGCTTCCATTTCGGAGGAGT
TGATTAATTCTGGATCCGATACGGCAACTGGAATTCTGCTAAAATGCCTA
GCCGAGAATGAAAACAAGGCAGAAAGTCCGGAGTCCTACCGCAACACCTT
TCTCGAAATGATCACCGATCACTATATCATCAAGAGACCAGAACTGCTGG
TGGGCGACGACCAGGATGAGAATGTGCCAAAGTTTGAGACCAACGAGTGC
GATTTCTTTAGGCATCCCAATATTGATCTTCAGTTGCTGGCCAAGATACA
AAAAGGAGAAGCCACTCTAGCGGAGGCCAGGGATTCTCACATGGTGTGGC
ACCTGAACCACGATCGCTTTCATCAAGACTTTCGAGACACCATCATGGTG
GATGCTATTGAGCGAAAACTGGGTGAAAATGCTGCAGAGTGCTTCAAATT
CATATTAAAGATTATGTATAACACAACTGATCCGTGGGAAAGAAAACTCT
CCAATCAAATAACTTTCGTTGAAATTAAACAGGCTATTGAAAGAAAATCG
AATAACCTGGATCTCATGAAGTACTTGGACCAGTACATAAGCCTATTGAC
TGAGGACTCACTGGGATTCTTTCGAAGAGTTGGCGACATGGGTGGTGGTG
TGTATGTGGTGGATATGGAACATGCCTTCGAGTCGCTGGCCTTTGCTTGT
GTGGAGTGTGTCATCACGGAACGATTTGGCTCAAAGGCAGCCCGAATATT
TCGAGTGATTCGATGCAAGAAATACATAGAACAGGAGGACCTGCAAAAGG
AGGCCATGATCCCATCCAAAGAGGCCAAGTCGCTGGCGTATAATTTGTTC
CAGGAACAGTTTATTCATGTCAAGATTATTAAGAAGCCTGGCGGAGGCAG
TAATGGCCCCGCAAAGGCATTTTACCTCTTCCAGGTCAAGGAGAAAGATA
CCGTGAGAATGCTGCTTGATGCCAGCTACAAATCCCTTTATAACACAATA
GAGCGATCTAACTTCGAAAAAAATGAGCACAAGGGCCTAATTGAAAAATC
ACAAAGGCTGGACAGCATCGTAGAGGCCATGAAGGAACGTGGAGAGACGG
ACGAGTATATCGCAGAGATTGTTGAGACTTTCACGCCGCCGGAATGCGAG
ATCCTTAATAAGGTGAAAAATCGCATAAAGACCTTGTCAAAAGCTGAACT
GACCCTAGACGATACAATCTTTCTTCTGCAAATGTATCAGCATCATTGCA
CTACGCTGCCAACGGGTATTCGTAAATTTAAATAAAAGCTTTCTAGACCA
T
BS06953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12267-RB | 1569 | CG12267-PB | 1..1569 | 17..1585 | 7845 | 100 | Plus |
| CG12267-RA | 1569 | CG12267-PA | 1..1569 | 17..1585 | 7845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12267-RB | 1650 | CG12267-RB | 65..1635 | 16..1586 | 7855 | 100 | Plus |
| CG12267-RA | 1592 | CG12267-RA | 7..1577 | 16..1586 | 7855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12460872..12461374 | 291..793 | 2515 | 100 | Plus |
| 3R | 32079331 | 3R | 12461601..12461950 | 900..1249 | 1750 | 100 | Plus |
| 3R | 32079331 | 3R | 12460528..12460803 | 16..291 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 12462233..12462403 | 1416..1586 | 855 | 100 | Plus |
| 3R | 32079331 | 3R | 12462009..12462176 | 1250..1417 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 12461438..12461548 | 794..904 | 540 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:13:10 has no hits.
BS06953.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:26 Download gff for
BS06953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 1..1569 | 17..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:41 Download gff for
BS06953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 60..1632 | 16..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:05 Download gff for
BS06953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 8..1574 | 17..1583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:54 Download gff for
BS06953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 61..1627 | 17..1583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:59 Download gff for
BS06953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 8..1574 | 17..1583 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:59 Download gff for
BS06953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12460529..12460803 | 17..291 | 100 | -> | Plus |
| 3R | 12460873..12461374 | 292..793 | 100 | -> | Plus |
| 3R | 12461438..12461543 | 794..899 | 100 | -> | Plus |
| 3R | 12461601..12461950 | 900..1249 | 100 | -> | Plus |
| 3R | 12462009..12462176 | 1250..1417 | 100 | -> | Plus |
| 3R | 12462235..12462400 | 1418..1583 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:05 Download gff for
BS06953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8286251..8286525 | 17..291 | 100 | -> | Plus |
| arm_3R | 8286595..8287096 | 292..793 | 100 | -> | Plus |
| arm_3R | 8287160..8287265 | 794..899 | 100 | -> | Plus |
| arm_3R | 8287323..8287672 | 900..1249 | 100 | -> | Plus |
| arm_3R | 8287731..8287898 | 1250..1417 | 100 | -> | Plus |
| arm_3R | 8287957..8288122 | 1418..1583 | 100 | | Plus |
BS06953.pep Sequence
Translation from 16 to 1584
> BS06953.pep
MSADYSHLSSAILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEV
AFALAVLVKFRLVDFAASKANPFLAEYALRREDVLCLLRYPRYVHLVQTK
YGNVGASISEELINSGSDTATGILLKCLAENENKAESPESYRNTFLEMIT
DHYIIKRPELLVGDDQDENVPKFETNECDFFRHPNIDLQLLAKIQKGEAT
LAEARDSHMVWHLNHDRFHQDFRDTIMVDAIERKLGENAAECFKFILKIM
YNTTDPWERKLSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLG
FFRRVGDMGGGVYVVDMEHAFESLAFACVECVITERFGSKAARIFRVIRC
KKYIEQEDLQKEAMIPSKEAKSLAYNLFQEQFIHVKIIKKPGGGSNGPAK
AFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKNEHKGLIEKSQRLDS
IVEAMKERGETDEYIAEIVETFTPPECEILNKVKNRIKTLSKAELTLDDT
IFLLQMYQHHCTTLPTGIRKFK*
BS06953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12267-PB | 522 | CG12267-PB | 1..522 | 1..522 | 2683 | 100 | Plus |
| CG12267-PA | 522 | CG12267-PA | 1..522 | 1..522 | 2683 | 100 | Plus |
