Clone Sequence Records
BS06959.3prime Sequence
898 bp (861 high quality bases) assembled on 2005-12-04
> BS06959.3prime
ATGGTCTAGAAAGCTTTCACACAATATTGATCTCGATCTTGATGAGCAGC
CGATCGTCGGCGCAGAAGCCCAGCTGTATGATGTTCGATATGTTGGCGTA
CTCGAGGAAACCGAATCCCCGTGTGCTGATCGCTTCGCGTGGCTTGTGGA
ACGCCAGAATCTCCGGCTTGGTCATGATGGTGTCGTGCTGCGACAACGTC
GCATCTGCCGGATGCACCATGCACAACTTGATGCGACCCTTGAAGGGCCA
GTCCAAGTGGTAATCGTTCTCCGACTGCATCAGATGCACATGCAAGCTGA
GCACATGCGGTTTCCGCGGCTGAATGTTCAGCCGCGCACAGAACTTGTAG
CCATGCGGCGAGGTGTAGCACTCGTGCGAGTACACTTGATTGTTGGCATT
GGCCCGCAGGCGAGCCACCAAGGCGCCCAGCTGCTCGATGCGCCACACAA
TCGTGCCATTGCTGTAGCGCGGATCAACGGGCGCCTGCTGGCGTGCCAGA
CGCAGCTGCTTTTGCATATTCTCCAGTCGCGTCTCCTGCTCGCGTGTCCG
CTGTTCCAAAACCACAATTCTCTGGTACATCGTTTGCACAATCTGCTCAT
CCACACCATTGGCATATTGCGGCGGTGGCGGCAGCTGCTGCTGGCCATGA
CCATTCTCCACGGCGGCGCCACTTGTGCTGGGCTTGTGTGGCTGCCAGGT
GGCAATGGCTGTCTGCTGGAATGCCTGCAGCATCAGCTGCATGTGATGCG
GCATGTCGGCCTTGAGGTGCTCCTCCAACTGATTGGTCTCTGGTCGGCCC
ACAAAATCGCACTTGATCTTGGCAAACGGGCACTTCTCCTCCTGCGGCTC
CTGCTGCCGCCGATAGGGACAACTGGGCAGATGGCGATGCAGTTCGAT
BS06959.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10961-PA | 1428 | Traf2-RA | 547..1428 | 898..17 | 4410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:21:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-RA | 2788 | CG10961-RA | 672..1554 | 898..16 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8155833..8156715 | 16..898 | 4415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:21:28 has no hits.
BS06959.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:32 Download gff for
BS06959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf2-PA | 547..1428 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:18 Download gff for
BS06959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10961-PA | 547..1428 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:54 Download gff for
BS06959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 672..1556 | 11..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:51:14 Download gff for
BS06959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 672..1556 | 11..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:51:14 Download gff for
BS06959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8155831..8156715 | 11..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:54 Download gff for
BS06959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8049864..8050748 | 11..898 | 99 | | Plus |
BS06959.5prime Sequence
896 bp (862 high quality bases) assembled on 2005-12-04
> BS06959.5prime
GAAGTTATCAGTCGACATGCAGCGAGTCCAGGCCGACCAAAAGCCAGCCA
GAATGCACCAGCATGCACATACGCATTCGCACGCGCACAGTTTGCAGCAT
GCGGAGGAGAAGGAGCACAATAGCAATGAGATGACGACCAACTTGTCGTC
GACTGGCCGAATTGCGGCCAGTAGCAGTGCCACGCCCAGCGCAGCAGCGG
GAGGCGGGGCCAGCGGAGCACCCACTCCGCCCAAGAGTCTGGCGCTCAAT
CAGAACCATCACTATGCACCCGGTTCGGATACATCCGGGGAACAGGAGGA
GGAGCTGCTGGACTCGCGATACGAGTGCGCCATTTGCATCGATTGGCTAA
ATGAGCCGGTGTTGACGTCGTGCGGCCATCGATTTTGTCGCAGCTGCCTC
ACCGCCTGGATGCAAAAGAACAATCAATGCTGCCCCATGGACAACAAGCG
TCTGTCCGCCGAGCACGACATCTTTCCGGACAACTACACGCGCCGCGAGA
TCGAGCAACTCAAGCGAGATTGCCCCAACTCCTCGCTGGGCTGTTCGGTG
GTTGCCTCGCCCATCGAACTGCATCGCCATCTGCCCAGTTGTCCCTATCG
GCGGCAGCAGGAGCCGCAGGAGGAGAAGTGCCCGTTTGCCAAGATCAAGT
GCGATTTTGTGGGCCGACCAGAGACCAATCAGTTGGAGGAGCACCTCAAG
GCCGACATGCCGCATCACATGCAGCTGATGCTGCAGGCATTCCAGCAGAC
AGCCATTGCCACCTGGCAGCCACACAAGCCCAGCACAAGTGGCGCCGCCG
TGGAGAATGGTCATGGCCAGCAGCAGCTGCCGCCACCGCCGCAATATGCC
AATGGTGTGGATGAGCAGATTGTGCAAACGATGTACCAGAGAATTG
BS06959.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10961-PA | 1428 | Traf2-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-RA | 2788 | CG10961-RA | 126..1005 | 17..896 | 4400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8156382..8157261 | 896..17 | 4400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:02:34 has no hits.
BS06959.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:33 Download gff for
BS06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf2-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:20 Download gff for
BS06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10961-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:12:45 Download gff for
BS06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 118..1005 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:08 Download gff for
BS06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 118..1005 | 9..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:08 Download gff for
BS06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8156382..8157269 | 9..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:12:45 Download gff for
BS06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8050415..8051302 | 9..896 | 99 | | Minus |
BS06959.complete Sequence
1460 bp (1460 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635674
> BS06959.complete
GAAGTTATCAGTCGACATGCAGCGAGTCCAGGCCGACCAAAAGCCAGCCA
GAATGCACCAGCATGCACATACGCATTCGCACGCGCACAGTTTGCAGCAT
GCGGAGGAGAAGGAGCACAATAGCAATGAGATGACGACCAACTTGTCGTC
GACTGGCCGAATTGCGGCCAGTAGCAGTGCCACGCCCAGCGCAGCAGCGG
GAGGCGGGGCCAGCGGAGCACCCACTCCGCCCAAGAGTCTGGCGCTCAAT
CAGAACCATCACTATGCACCCGGTTCGGATACATCCGGGGAACAGGAGGA
GGAGCTGCTGGACTCGCGATACGAGTGCGCCATTTGCATCGATTGGCTAA
ATGAGCCGGTGTTGACGTCGTGCGGCCATCGATTTTGTCGCAGCTGCCTC
ACCGCCTGGATGCAAAAGAACAATCAATGCTGCCCCATGGACAACAAGCG
TCTGTCCGCCGAGCACGACATCTTTCCGGACAACTACACGCGCCGCGAGA
TCGAGCAACTCAAGCGAGATTGCCCCAACTCCTCGCTGGGCTGTTCGGTG
GTTGCCTCGCCCATCGAACTGCATCGCCATCTGCCCAGTTGTCCCTATCG
GCGGCAGCAGGAGCCGCAGGAGGAGAAGTGCCCGTTTGCCAAGATCAAGT
GCGATTTTGTGGGCCGACCAGAGACCAATCAGTTGGAGGAGCACCTCAAG
GCCGACATGCCGCATCACATGCAGCTGATGCTGCAGGCATTCCAGCAGAC
AGCCATTGCCACCTGGCAGCCACACAAGCCCAGCACAAGTGGCGCCGCCG
TGGAGAATGGTCATGGCCAGCAGCAGCTGCCGCCACCGCCGCAATATGCC
AATGGTGTGGATGAGCAGATTGTGCAAACGATGTACCAGAGAATTGTGGT
TTTGGAACAGCGGACACGCGAGCAGGAGACGCGACTGGAGAATATGCAAA
AGCAGCTGCGTCTGGCACGCCAGCAGGCGCCCGTTGATCCGCGCTACAGC
AATGGCACGATTGTGTGGCGCATCGAGCAGCTGGGCGCCTTGGTGGCTCG
CCTGCGGGCCAATGCCAACAATCAAGTGTACTCGCACGAGTGCTACACCT
CGCCGCATGGCTACAAGTTCTGTGCGCGGCTGAACATTCAGCCGCGGAAA
CCGCATGTGCTCAGCTTGCATGTGCATCTGATGCAGTCGGAGAACGATTA
CCACTTGGACTGGCCCTTCAAGGGTCGCATCAAGTTGTGCATGGTGCATC
CGGCAGATGCGACGTTGTCGCAGCACGACACCATCATGACCAAGCCGGAG
ATTCTGGCGTTCCACAAGCCACGCGAAGCGATCAGCACACGGGGATTCGG
TTTCCTCGAGTACGCCAACATATCGAACATCATACAGCTGGGCTTCTGCG
CCGACGATCGGCTGCTCATCAAGATCGAGATCAATATTGTGTGAAAGCTT
TCTAGACCAT
BS06959.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-RA | 1428 | CG10961-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-RA | 2788 | CG10961-RA | 126..1554 | 17..1445 | 7145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8155833..8157261 | 1445..17 | 7145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:02:05 has no hits.
BS06959.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:38 Download gff for
BS06959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 1..1428 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:17 Download gff for
BS06959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 98..1536 | 9..1450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:25 Download gff for
BS06959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 126..1552 | 17..1443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:38 Download gff for
BS06959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 98..1536 | 9..1450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:51 Download gff for
BS06959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 126..1552 | 17..1443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:51 Download gff for
BS06959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8155835..8157261 | 17..1443 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:25 Download gff for
BS06959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8049868..8051294 | 17..1443 | 100 | | Minus |
BS06959.pep Sequence
Translation from 16 to 1443
> BS06959.pep
MQRVQADQKPARMHQHAHTHSHAHSLQHAEEKEHNSNEMTTNLSSTGRIA
ASSSATPSAAAGGGASGAPTPPKSLALNQNHHYAPGSDTSGEQEEELLDS
RYECAICIDWLNEPVLTSCGHRFCRSCLTAWMQKNNQCCPMDNKRLSAEH
DIFPDNYTRREIEQLKRDCPNSSLGCSVVASPIELHRHLPSCPYRRQQEP
QEEKCPFAKIKCDFVGRPETNQLEEHLKADMPHHMQLMLQAFQQTAIATW
QPHKPSTSGAAVENGHGQQQLPPPPQYANGVDEQIVQTMYQRIVVLEQRT
REQETRLENMQKQLRLARQQAPVDPRYSNGTIVWRIEQLGALVARLRANA
NNQVYSHECYTSPHGYKFCARLNIQPRKPHVLSLHVHLMQSENDYHLDWP
FKGRIKLCMVHPADATLSQHDTIMTKPEILAFHKPREAISTRGFGFLEYA
NISNIIQLGFCADDRLLIKIEINIV*
BS06959.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-PA | 475 | CG10961-PA | 1..475 | 1..475 | 2563 | 100 | Plus |
| CG9014-PB | 328 | CG9014-PB | 10..108 | 91..194 | 162 | 35.2 | Plus |
| CG9014-PA | 328 | CG9014-PA | 10..108 | 91..194 | 162 | 35.2 | Plus |
