Clone Sequence Records
BS06965.3prime Sequence
848 bp (791 high quality bases) assembled on 2005-12-04
> BS06965.3prime
ATGGTCTAGAAAGCTTCTAGGTCTTCTCCTCCTTTTCCTTGTTGTAGCGC
TCCAGTTCTTTGAGGAACTGCGCCTTGGGTTTCATTACATTTGGCCGTTC
TCCGCGGCAGTTGGGGCAGAACCACTTGCCTTTTGGTTTTAGTACCAGGG
AGACGCACGAAAAATGGAACCACTCGATGGGGCACAGGTCATTGTCGCAC
AGGATCATCTCGCCAAAGGAGATCTGATTGCAGACACAGTAGGTCGGCTC
GTCCGGATCAATGGTCTCCGGCGGCGGCGTCTCCTCTCGCGTACTGGCAT
TGGCATTTGAAGCCCCAGAACCGCGTACCTTGCGCTTTTTCTTCTTGCCG
GAATTATTGCCACCAACTACGCCGGCTCCGCTGGCACCACCACCTCCGGC
TGCTCCACTGCTCGTGGCTGCAGAGCCGCTAGCCAAACTGCCAGAAGCCG
ACTGCAGACTGGCCTTTCGTCCCTGTCCCGCTCCACTGGCACCGCCCAAC
GAGGATTTGCGCTCGCCACTGCCACCACCACTGCCACTGGCTTCATTTGC
CGAGTTGGACTCGTTGCCGCCCATCTCCAGAGAGCTTCCGTTGTTAACAA
CACTCTCGTTTCGCCTCCTCGACCGCTTGCTACCTGTGCGCTGCAGTTCT
CCGCCTCCTCCGCCGCTGGCATTGCCATTGGAGCCGCTGTTGCCACCATT
ACTGACATGGCTCGAGCGCTCCGAGTTGGGCGTTGAGCCGCCACCGTTGC
CGGAGGTCATGGCATTAGAACCAGGCACAACACCACCTGCATAGCCGCCC
AAGGCGTACAGATCTTTGGCCGAAAGCAGGCCGTTTCCATTTAGGCCA
BS06965.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-PA | 1302 | CG7379-RA | 471..1302 | 848..17 | 4160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-RA | 1787 | CG7379-RA | 666..1497 | 848..17 | 4160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17796934..17797558 | 224..848 | 3125 | 100 | Plus |
3R | 32079331 | 3R | 17796666..17796875 | 17..226 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:47:26 has no hits.
BS06965.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:47 Download gff for
BS06965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-PA | 472..1302 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:36 Download gff for
BS06965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-PA | 472..1302 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:45:34 Download gff for
BS06965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 667..1500 | 12..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:55 Download gff for
BS06965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 667..1500 | 12..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:55 Download gff for
BS06965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17796663..17796872 | 12..223 | 98 | <- | Plus |
3R | 17796934..17797557 | 224..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:45:34 Download gff for
BS06965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13622385..13622594 | 12..223 | 98 | <- | Plus |
arm_3R | 13622656..13623279 | 224..847 | 100 | | Plus |
BS06965.5prime Sequence
824 bp (808 high quality bases) assembled on 2005-12-04
> BS06965.5prime
GAAGTTATCAGTCGACATGATAAACCCCATTGCATCCGAGTCGGAGGCCA
TCAATTCGGCCACCTATGTGGACAACTATATCGATTCGGTGGAAAATCTG
CCGGACGACGTGCAGCGCCAGTTGTCACGCATCCGCGACATAGACGTCCA
GTACAGAGGCCTCATTCGCGACGTAGACCACTACTACGACCTGTATCTGT
CCCTGCAGAACTCCGCGGATGCCGGGCGACGGTCTCGAAGCATCTCCAGG
ATGCACCAGAGTCTCATTCAGGCGCAGGAACTGGGCGACGAAAAAATGCA
GATCGTCAATCATATGCAGGAGATAATCGACGGCAAGCTGCGCCAGCTGG
ACACCGACCAGCAGAACCTGGACCTGAAGGAGGACCGCGATCGGTATGCG
CTCCTGGACGATGGCACGCCTTCGAAGCTGCAACGCCTGCAGAGCCCGAT
GAGGGAGCAGGGCAACCAAGCGGGCACTGGCAACGGTGGCCTAAATGGAA
ACGGCCTGCTTTCGGCCAAAGATCTGTACGCCTTGGGCGGCTATGCAGGT
GGTGTTGTGCCTGGTTCTAATGCCATGACCTCCGGCAACGGTGGCGGCTC
AACGCCCAACTCGGAGCGCTCGAGCCATGTCAGTAATGGTGGCAACAGCG
GCTCCAATGGCAATGCCAGCGGCGGAGGAGGCGGAGAACTGCAGCGCACA
GGTAGCAAGCGGTCGAGGAGGCGAAACGAGAGTGTTGTTAACAACGGAAG
CTCTCTGGAGATGGGCGGCAACGAGTCCAACTCGGCAAATGAAGCCAGTG
GCAGTGGTGGTGGCAGTGGCGAGC
BS06965.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-PA | 1302 | CG7379-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-RA | 1787 | CG7379-RA | 196..1003 | 17..824 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17797221..17797888 | 824..157 | 3340 | 100 | Minus |
3R | 32079331 | 3R | 17797967..17798109 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:37:18 has no hits.
BS06965.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:48 Download gff for
BS06965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:37 Download gff for
BS06965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:58 Download gff for
BS06965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 188..1003 | 9..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:04 Download gff for
BS06965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 188..1003 | 9..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:04 Download gff for
BS06965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17797968..17798113 | 9..158 | 97 | | Minus |
3R | 17797221..17797886 | 159..824 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:58 Download gff for
BS06965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13622943..13623608 | 159..824 | 100 | <- | Minus |
arm_3R | 13623690..13623835 | 9..158 | 97 | | Minus |
BS06965.complete Sequence
1334 bp (1334 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635676
> BS06965.complete
GAAGTTATCAGTCGACATGATAAACCCCATTGCATCCGAGTCGGAGGCCA
TCAATTCGGCCACCTATGTGGACAACTATATCGATTCGGTGGAAAATCTG
CCGGACGACGTGCAGCGCCAGTTGTCACGCATCCGCGACATAGACGTCCA
GTACAGAGGCCTCATTCGCGACGTAGACCACTACTACGACCTGTATCTGT
CCCTGCAGAACTCCGCGGATGCCGGGCGACGGTCTCGAAGCATCTCCAGG
ATGCACCAGAGTCTCATTCAGGCGCAGGAACTGGGCGACGAAAAAATGCA
GATCGTCAATCATATGCAGGAGATAATCGACGGCAAGCTGCGCCAGCTGG
ACACCGACCAGCAGAACCTGGACCTGAAGGAGGACCGCGATCGGTATGCG
CTCCTGGACGATGGCACGCCTTCGAAGCTGCAACGCCTGCAGAGCCCGAT
GAGGGAGCAGGGCAACCAAGCGGGCACTGGCAACGGTGGCCTAAATGGAA
ACGGCCTGCTTTCGGCCAAAGATCTGTACGCCTTGGGCGGCTATGCAGGT
GGTGTTGTGCCTGGTTCTAATGCCATGACCTCCGGCAACGGTGGCGGCTC
AACGCCCAACTCGGAGCGCTCGAGCCATGTCAGTAATGGTGGCAACAGCG
GCTCCAATGGCAATGCCAGCGGCGGAGGAGGCGGAGAACTGCAGCGCACA
GGTAGCAAGCGGTCGAGGAGGCGAAACGAGAGTGTTGTTAACAACGGAAG
CTCTCTGGAGATGGGCGGCAACGAGTCCAACTCGGCAAATGAAGCCAGTG
GCAGTGGTGGTGGCAGTGGCGAGCGCAAATCCTCGTTGGGCGGTGCCAGT
GGAGCGGGACAGGGACGAAAGGCCAGTCTGCAGTCGGCTTCTGGCAGTTT
GGCTAGCGGCTCTGCAGCCACGAGCAGTGGAGCAGCCGGAGGTGGTGGTG
CCAGCGGAGCCGGCGTAGTTGGTGGCAATAATTCCGGCAAGAAGAAAAAG
CGCAAGGTACGCGGTTCTGGGGCTTCAAATGCCAATGCCAGTACGCGAGA
GGAGACGCCGCCGCCGGAGACCATTGATCCGGACGAGCCGACCTACTGTG
TCTGCAATCAGATCTCCTTTGGCGAGATGATCCTGTGCGACAATGACCTG
TGCCCCATCGAGTGGTTCCATTTTTCGTGCGTCTCCCTGGTACTAAAACC
AAAAGGCAAGTGGTTCTGCCCCAACTGCCGCGGAGAACGGCCAAATGTAA
TGAAACCCAAGGCGCAGTTCCTCAAAGAACTGGAGCGCTACAACAAGGAA
AAGGAGGAGAAGACCTAGAAGCTTTCTAGACCAT
BS06965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-RA | 1302 | CG7379-PA | 1..1302 | 17..1318 | 6510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-RA | 1787 | CG7379-RA | 196..1497 | 17..1318 | 6510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17796934..17797888 | 1111..157 | 4775 | 100 | Minus |
3R | 32079331 | 3R | 17796666..17796875 | 1318..1109 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 17797967..17798109 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:04:14 has no hits.
BS06965.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:41 Download gff for
BS06965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 1..1302 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:54 Download gff for
BS06965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 209..1521 | 9..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:09 Download gff for
BS06965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 196..1497 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:41 Download gff for
BS06965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 209..1521 | 9..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:45 Download gff for
BS06965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 196..1497 | 17..1318 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:45 Download gff for
BS06965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17796666..17796872 | 1112..1318 | 100 | <- | Minus |
3R | 17796934..17797886 | 159..1111 | 100 | <- | Minus |
3R | 17797968..17798109 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:09 Download gff for
BS06965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13622388..13622594 | 1112..1318 | 100 | <- | Minus |
arm_3R | 13622656..13623608 | 159..1111 | 100 | <- | Minus |
arm_3R | 13623690..13623831 | 17..158 | 100 | | Minus |
BS06965.pep Sequence
Translation from 16 to 1317
> BS06965.pep
MINPIASESEAINSATYVDNYIDSVENLPDDVQRQLSRIRDIDVQYRGLI
RDVDHYYDLYLSLQNSADAGRRSRSISRMHQSLIQAQELGDEKMQIVNHM
QEIIDGKLRQLDTDQQNLDLKEDRDRYALLDDGTPSKLQRLQSPMREQGN
QAGTGNGGLNGNGLLSAKDLYALGGYAGGVVPGSNAMTSGNGGGSTPNSE
RSSHVSNGGNSGSNGNASGGGGGELQRTGSKRSRRRNESVVNNGSSLEMG
GNESNSANEASGSGGGSGERKSSLGGASGAGQGRKASLQSASGSLASGSA
ATSSGAAGGGGASGAGVVGGNNSGKKKKRKVRGSGASNANASTREETPPP
ETIDPDEPTYCVCNQISFGEMILCDNDLCPIEWFHFSCVSLVLKPKGKWF
CPNCRGERPNVMKPKAQFLKELERYNKEKEEKT*
BS06965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-PA | 433 | CG7379-PA | 1..433 | 1..433 | 2248 | 100 | Plus |
CG9293-PA | 285 | CG9293-PA | 112..282 | 223..408 | 294 | 36.3 | Plus |
Ing3-PA | 686 | CG6632-PA | 430..686 | 177..410 | 294 | 31 | Plus |
CG9293-PB | 271 | CG9293-PB | 112..268 | 223..408 | 284 | 34.2 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 508..751 | 105..360 | 185 | 26.6 | Plus |
Ing3-PA | 686 | CG6632-PA | 3..358 | 17..342 | 157 | 22.2 | Plus |