Clone BS06965 Report

Search the DGRC for BS06965

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG7379-RA
Protein status:BS06965.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06965.3prime Sequence

848 bp (791 high quality bases) assembled on 2005-12-04

> BS06965.3prime
ATGGTCTAGAAAGCTTCTAGGTCTTCTCCTCCTTTTCCTTGTTGTAGCGC
TCCAGTTCTTTGAGGAACTGCGCCTTGGGTTTCATTACATTTGGCCGTTC
TCCGCGGCAGTTGGGGCAGAACCACTTGCCTTTTGGTTTTAGTACCAGGG
AGACGCACGAAAAATGGAACCACTCGATGGGGCACAGGTCATTGTCGCAC
AGGATCATCTCGCCAAAGGAGATCTGATTGCAGACACAGTAGGTCGGCTC
GTCCGGATCAATGGTCTCCGGCGGCGGCGTCTCCTCTCGCGTACTGGCAT
TGGCATTTGAAGCCCCAGAACCGCGTACCTTGCGCTTTTTCTTCTTGCCG
GAATTATTGCCACCAACTACGCCGGCTCCGCTGGCACCACCACCTCCGGC
TGCTCCACTGCTCGTGGCTGCAGAGCCGCTAGCCAAACTGCCAGAAGCCG
ACTGCAGACTGGCCTTTCGTCCCTGTCCCGCTCCACTGGCACCGCCCAAC
GAGGATTTGCGCTCGCCACTGCCACCACCACTGCCACTGGCTTCATTTGC
CGAGTTGGACTCGTTGCCGCCCATCTCCAGAGAGCTTCCGTTGTTAACAA
CACTCTCGTTTCGCCTCCTCGACCGCTTGCTACCTGTGCGCTGCAGTTCT
CCGCCTCCTCCGCCGCTGGCATTGCCATTGGAGCCGCTGTTGCCACCATT
ACTGACATGGCTCGAGCGCTCCGAGTTGGGCGTTGAGCCGCCACCGTTGC
CGGAGGTCATGGCATTAGAACCAGGCACAACACCACCTGCATAGCCGCCC
AAGGCGTACAGATCTTTGGCCGAAAGCAGGCCGTTTCCATTTAGGCCA

BS06965.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7379-PA 1302 CG7379-RA 471..1302 848..17 4160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7379-RA 1787 CG7379-RA 666..1497 848..17 4160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17796934..17797558 224..848 3125 100 Plus
3R 32079331 3R 17796666..17796875 17..226 1050 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:47:26 has no hits.

BS06965.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:47 Download gff for BS06965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7379-PA 472..1302 17..847 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:36 Download gff for BS06965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7379-PA 472..1302 17..847 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:45:34 Download gff for BS06965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7379-RA 667..1500 12..847 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:55 Download gff for BS06965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7379-RA 667..1500 12..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:55 Download gff for BS06965.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17796663..17796872 12..223 98 <- Plus
3R 17796934..17797557 224..847 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:45:34 Download gff for BS06965.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13622385..13622594 12..223 98 <- Plus
arm_3R 13622656..13623279 224..847 100   Plus

BS06965.5prime Sequence

824 bp (808 high quality bases) assembled on 2005-12-04

> BS06965.5prime
GAAGTTATCAGTCGACATGATAAACCCCATTGCATCCGAGTCGGAGGCCA
TCAATTCGGCCACCTATGTGGACAACTATATCGATTCGGTGGAAAATCTG
CCGGACGACGTGCAGCGCCAGTTGTCACGCATCCGCGACATAGACGTCCA
GTACAGAGGCCTCATTCGCGACGTAGACCACTACTACGACCTGTATCTGT
CCCTGCAGAACTCCGCGGATGCCGGGCGACGGTCTCGAAGCATCTCCAGG
ATGCACCAGAGTCTCATTCAGGCGCAGGAACTGGGCGACGAAAAAATGCA
GATCGTCAATCATATGCAGGAGATAATCGACGGCAAGCTGCGCCAGCTGG
ACACCGACCAGCAGAACCTGGACCTGAAGGAGGACCGCGATCGGTATGCG
CTCCTGGACGATGGCACGCCTTCGAAGCTGCAACGCCTGCAGAGCCCGAT
GAGGGAGCAGGGCAACCAAGCGGGCACTGGCAACGGTGGCCTAAATGGAA
ACGGCCTGCTTTCGGCCAAAGATCTGTACGCCTTGGGCGGCTATGCAGGT
GGTGTTGTGCCTGGTTCTAATGCCATGACCTCCGGCAACGGTGGCGGCTC
AACGCCCAACTCGGAGCGCTCGAGCCATGTCAGTAATGGTGGCAACAGCG
GCTCCAATGGCAATGCCAGCGGCGGAGGAGGCGGAGAACTGCAGCGCACA
GGTAGCAAGCGGTCGAGGAGGCGAAACGAGAGTGTTGTTAACAACGGAAG
CTCTCTGGAGATGGGCGGCAACGAGTCCAACTCGGCAAATGAAGCCAGTG
GCAGTGGTGGTGGCAGTGGCGAGC

BS06965.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7379-PA 1302 CG7379-RA 1..808 17..824 4040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7379-RA 1787 CG7379-RA 196..1003 17..824 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17797221..17797888 824..157 3340 100 Minus
3R 32079331 3R 17797967..17798109 159..17 715 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:37:18 has no hits.

BS06965.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:48 Download gff for BS06965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7379-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:37 Download gff for BS06965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7379-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:58 Download gff for BS06965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7379-RA 188..1003 9..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:04 Download gff for BS06965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7379-RA 188..1003 9..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:04 Download gff for BS06965.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17797968..17798113 9..158 97   Minus
3R 17797221..17797886 159..824 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:58 Download gff for BS06965.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13622943..13623608 159..824 100 <- Minus
arm_3R 13623690..13623835 9..158 97   Minus

BS06965.complete Sequence

1334 bp (1334 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635676

> BS06965.complete
GAAGTTATCAGTCGACATGATAAACCCCATTGCATCCGAGTCGGAGGCCA
TCAATTCGGCCACCTATGTGGACAACTATATCGATTCGGTGGAAAATCTG
CCGGACGACGTGCAGCGCCAGTTGTCACGCATCCGCGACATAGACGTCCA
GTACAGAGGCCTCATTCGCGACGTAGACCACTACTACGACCTGTATCTGT
CCCTGCAGAACTCCGCGGATGCCGGGCGACGGTCTCGAAGCATCTCCAGG
ATGCACCAGAGTCTCATTCAGGCGCAGGAACTGGGCGACGAAAAAATGCA
GATCGTCAATCATATGCAGGAGATAATCGACGGCAAGCTGCGCCAGCTGG
ACACCGACCAGCAGAACCTGGACCTGAAGGAGGACCGCGATCGGTATGCG
CTCCTGGACGATGGCACGCCTTCGAAGCTGCAACGCCTGCAGAGCCCGAT
GAGGGAGCAGGGCAACCAAGCGGGCACTGGCAACGGTGGCCTAAATGGAA
ACGGCCTGCTTTCGGCCAAAGATCTGTACGCCTTGGGCGGCTATGCAGGT
GGTGTTGTGCCTGGTTCTAATGCCATGACCTCCGGCAACGGTGGCGGCTC
AACGCCCAACTCGGAGCGCTCGAGCCATGTCAGTAATGGTGGCAACAGCG
GCTCCAATGGCAATGCCAGCGGCGGAGGAGGCGGAGAACTGCAGCGCACA
GGTAGCAAGCGGTCGAGGAGGCGAAACGAGAGTGTTGTTAACAACGGAAG
CTCTCTGGAGATGGGCGGCAACGAGTCCAACTCGGCAAATGAAGCCAGTG
GCAGTGGTGGTGGCAGTGGCGAGCGCAAATCCTCGTTGGGCGGTGCCAGT
GGAGCGGGACAGGGACGAAAGGCCAGTCTGCAGTCGGCTTCTGGCAGTTT
GGCTAGCGGCTCTGCAGCCACGAGCAGTGGAGCAGCCGGAGGTGGTGGTG
CCAGCGGAGCCGGCGTAGTTGGTGGCAATAATTCCGGCAAGAAGAAAAAG
CGCAAGGTACGCGGTTCTGGGGCTTCAAATGCCAATGCCAGTACGCGAGA
GGAGACGCCGCCGCCGGAGACCATTGATCCGGACGAGCCGACCTACTGTG
TCTGCAATCAGATCTCCTTTGGCGAGATGATCCTGTGCGACAATGACCTG
TGCCCCATCGAGTGGTTCCATTTTTCGTGCGTCTCCCTGGTACTAAAACC
AAAAGGCAAGTGGTTCTGCCCCAACTGCCGCGGAGAACGGCCAAATGTAA
TGAAACCCAAGGCGCAGTTCCTCAAAGAACTGGAGCGCTACAACAAGGAA
AAGGAGGAGAAGACCTAGAAGCTTTCTAGACCAT

BS06965.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7379-RA 1302 CG7379-PA 1..1302 17..1318 6510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7379-RA 1787 CG7379-RA 196..1497 17..1318 6510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17796934..17797888 1111..157 4775 100 Minus
3R 32079331 3R 17796666..17796875 1318..1109 1050 100 Minus
3R 32079331 3R 17797967..17798109 159..17 715 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:04:14 has no hits.

BS06965.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:41 Download gff for BS06965.complete
Subject Subject Range Query Range Percent Splice Strand
CG7379-RA 1..1302 17..1318 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:54 Download gff for BS06965.complete
Subject Subject Range Query Range Percent Splice Strand
CG7379-RA 209..1521 9..1323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:09 Download gff for BS06965.complete
Subject Subject Range Query Range Percent Splice Strand
CG7379-RA 196..1497 17..1318 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:41 Download gff for BS06965.complete
Subject Subject Range Query Range Percent Splice Strand
CG7379-RA 209..1521 9..1323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:45 Download gff for BS06965.complete
Subject Subject Range Query Range Percent Splice Strand
CG7379-RA 196..1497 17..1318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:45 Download gff for BS06965.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17796666..17796872 1112..1318 100 <- Minus
3R 17796934..17797886 159..1111 100 <- Minus
3R 17797968..17798109 17..158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:09 Download gff for BS06965.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13622388..13622594 1112..1318 100 <- Minus
arm_3R 13622656..13623608 159..1111 100 <- Minus
arm_3R 13623690..13623831 17..158 100   Minus

BS06965.pep Sequence

Translation from 16 to 1317

> BS06965.pep
MINPIASESEAINSATYVDNYIDSVENLPDDVQRQLSRIRDIDVQYRGLI
RDVDHYYDLYLSLQNSADAGRRSRSISRMHQSLIQAQELGDEKMQIVNHM
QEIIDGKLRQLDTDQQNLDLKEDRDRYALLDDGTPSKLQRLQSPMREQGN
QAGTGNGGLNGNGLLSAKDLYALGGYAGGVVPGSNAMTSGNGGGSTPNSE
RSSHVSNGGNSGSNGNASGGGGGELQRTGSKRSRRRNESVVNNGSSLEMG
GNESNSANEASGSGGGSGERKSSLGGASGAGQGRKASLQSASGSLASGSA
ATSSGAAGGGGASGAGVVGGNNSGKKKKRKVRGSGASNANASTREETPPP
ETIDPDEPTYCVCNQISFGEMILCDNDLCPIEWFHFSCVSLVLKPKGKWF
CPNCRGERPNVMKPKAQFLKELERYNKEKEEKT*

BS06965.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7379-PA 433 CG7379-PA 1..433 1..433 2248 100 Plus
CG9293-PA 285 CG9293-PA 112..282 223..408 294 36.3 Plus
Ing3-PA 686 CG6632-PA 430..686 177..410 294 31 Plus
CG9293-PB 271 CG9293-PB 112..268 223..408 284 34.2 Plus
Mur89F-PC 2158 CG4090-PC 508..751 105..360 185 26.6 Plus
Ing3-PA 686 CG6632-PA 3..358 17..342 157 22.2 Plus