Clone BS06968 Report

Search the DGRC for BS06968

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG9836-RA
Protein status:BS06968.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06968.5prime Sequence

495 bp (494 high quality bases) assembled on 2005-12-04

> BS06968.5prime
GAAGTTATCAGTCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGC
GATCGCAGCTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAA
AATGTCGTTGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAA
GAAGGATGTCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCG
ATGTGATGAAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGAC
GCCAAGTTCAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCT
GGCCACCGAGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGA
AGAATACGGACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCAT
TGCTCCATGCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAA
GGTCAAGCAGCAGAAGAAGGTGGCCAACTGAAAGCTTTCTAGACC

BS06968.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-PA 465 CG9836-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-RA 955 CG9836-RA 107..571 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8823424..8823801 481..104 1890 100 Minus
3R 32079331 3R 8823983..8824071 105..17 445 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:43:26 has no hits.

BS06968.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:54 Download gff for BS06968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-PA 1..465 17..481 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:46 Download gff for BS06968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-PA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:43:08 Download gff for BS06968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..574 17..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:06 Download gff for BS06968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..574 17..484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:06 Download gff for BS06968.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8823421..8823801 104..484 99 <- Minus
3R 8823985..8824071 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:43:08 Download gff for BS06968.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4649143..4649523 104..484 99 <- Minus
arm_3R 4649707..4649793 17..103 100   Minus

BS06968.3prime Sequence

495 bp (494 high quality bases) assembled on 2005-12-04

> BS06968.3prime
ATGGTCTAGAAAGCTTTCAGTTGGCCACCTTCTTCTGCTGCTTGACCTTG
TAGTCAGCCAGGGCCGCCTTGATGGCATCCTCGGCCAGCATGGAGCAATG
CAGCTTGACGGGCGGCAGACGCAGCTCCTTGGCGATGTCCGTATTCTTCA
GCTTTCCGGCCTCGTCGATGGACTTGCCCTTCACCCACTCGGTGGCCAGG
GAGCTGCTGGCAATGGCCGATCCACAGCCGAAGGTCTTGAACTTGGCGTC
CACTATCTTGCCGTTCTCGTCCACCTTGATCTGCAGTTTCATCACATCGC
CGCAGGCTGGTGCTCCGACCAAGCCGGTGCCCACAGTGACATCCTTCTTG
TCCAAAGATCCCACGTTGCGCGGGTTTTCGTAGTGCTCAACGACATTTTC
ATGATACAATGCCACCGGGACACTTTGTACGCGCTTCAGCTGCGATCGCA
GCAACCGGGAGGAGTTTCGCACCAGGGACATGTCGACTGATAACT

BS06968.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-PA 465 CG9836-RA 1..465 481..17 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-RA 955 CG9836-RA 107..571 481..17 2325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8823424..8823801 17..394 1890 100 Plus
3R 32079331 3R 8823983..8824071 393..481 445 100 Plus
Blast to na_te.dros performed on 2015-01-31 16:36:31 has no hits.

BS06968.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:53 Download gff for BS06968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-PA 1..465 17..481 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:45 Download gff for BS06968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-PA 1..465 17..481 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:25:32 Download gff for BS06968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..574 14..481 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:36 Download gff for BS06968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..574 14..481 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:36 Download gff for BS06968.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8823421..8823801 14..394 99 <- Plus
3R 8823985..8824071 395..481 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:25:32 Download gff for BS06968.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4649707..4649793 395..481 100   Plus
arm_3R 4649143..4649523 14..394 99 <- Plus

BS06968.complete Sequence

497 bp (497 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635678

> BS06968.complete
GAAGTTATCAGTCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGC
GATCGCAGCTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAA
AATGTCGTTGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAA
GAAGGATGTCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCG
ATGTGATGAAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGAC
GCCAAGTTCAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCT
GGCCACCGAGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGA
AGAATACGGACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCAT
TGCTCCATGCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAA
GGTCAAGCAGCAGAAGAAGGTGGCCAACTGAAAGCTTTCTAGACCAT

BS06968.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-RA 465 CG9836-PA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-RA 955 CG9836-RA 107..571 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8823424..8823801 481..104 1890 100 Minus
3R 32079331 3R 8823983..8824071 105..17 445 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:46:58 has no hits.

BS06968.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:25 Download gff for BS06968.complete
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:50 Download gff for BS06968.complete
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 103..570 17..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:58 Download gff for BS06968.complete
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..570 17..480 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:25 Download gff for BS06968.complete
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 103..570 17..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:18 Download gff for BS06968.complete
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..570 17..480 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:18 Download gff for BS06968.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8823425..8823801 104..480 100 <- Minus
3R 8823985..8824071 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:58 Download gff for BS06968.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4649147..4649523 104..480 100 <- Minus
arm_3R 4649707..4649793 17..103 100   Minus

BS06968.pep Sequence

Translation from 16 to 480

> BS06968.pep
MSLVRNSSRLLRSQLKRVQSVPVALYHENVVEHYENPRNVGSLDKKDVTV
GTGLVGAPACGDVMKLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWV
KGKSIDEAGKLKNTDIAKELRLPPVKLHCSMLAEDAIKAALADYKVKQQK
KVAN*

BS06968.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-PA 154 CG9836-PA 1..154 1..154 776 100 Plus