Clone Sequence Records
BS06968.5prime Sequence
495 bp (494 high quality bases) assembled on 2005-12-04
> BS06968.5prime
GAAGTTATCAGTCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGC
GATCGCAGCTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAA
AATGTCGTTGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAA
GAAGGATGTCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCG
ATGTGATGAAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGAC
GCCAAGTTCAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCT
GGCCACCGAGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGA
AGAATACGGACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCAT
TGCTCCATGCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAA
GGTCAAGCAGCAGAAGAAGGTGGCCAACTGAAAGCTTTCTAGACC
BS06968.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-PA | 465 | CG9836-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-RA | 955 | CG9836-RA | 107..571 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8823424..8823801 | 481..104 | 1890 | 100 | Minus |
3R | 32079331 | 3R | 8823983..8824071 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:43:26 has no hits.
BS06968.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:54 Download gff for
BS06968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-PA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:46 Download gff for
BS06968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-PA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:43:08 Download gff for
BS06968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..574 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:06 Download gff for
BS06968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..574 | 17..484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:06 Download gff for
BS06968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8823421..8823801 | 104..484 | 99 | <- | Minus |
3R | 8823985..8824071 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:43:08 Download gff for
BS06968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4649143..4649523 | 104..484 | 99 | <- | Minus |
arm_3R | 4649707..4649793 | 17..103 | 100 | | Minus |
BS06968.3prime Sequence
495 bp (494 high quality bases) assembled on 2005-12-04
> BS06968.3prime
ATGGTCTAGAAAGCTTTCAGTTGGCCACCTTCTTCTGCTGCTTGACCTTG
TAGTCAGCCAGGGCCGCCTTGATGGCATCCTCGGCCAGCATGGAGCAATG
CAGCTTGACGGGCGGCAGACGCAGCTCCTTGGCGATGTCCGTATTCTTCA
GCTTTCCGGCCTCGTCGATGGACTTGCCCTTCACCCACTCGGTGGCCAGG
GAGCTGCTGGCAATGGCCGATCCACAGCCGAAGGTCTTGAACTTGGCGTC
CACTATCTTGCCGTTCTCGTCCACCTTGATCTGCAGTTTCATCACATCGC
CGCAGGCTGGTGCTCCGACCAAGCCGGTGCCCACAGTGACATCCTTCTTG
TCCAAAGATCCCACGTTGCGCGGGTTTTCGTAGTGCTCAACGACATTTTC
ATGATACAATGCCACCGGGACACTTTGTACGCGCTTCAGCTGCGATCGCA
GCAACCGGGAGGAGTTTCGCACCAGGGACATGTCGACTGATAACT
BS06968.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-PA | 465 | CG9836-RA | 1..465 | 481..17 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-RA | 955 | CG9836-RA | 107..571 | 481..17 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8823424..8823801 | 17..394 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 8823983..8824071 | 393..481 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:36:31 has no hits.
BS06968.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:57:53 Download gff for
BS06968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-PA | 1..465 | 17..481 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:45 Download gff for
BS06968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-PA | 1..465 | 17..481 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:25:32 Download gff for
BS06968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..574 | 14..481 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:36 Download gff for
BS06968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..574 | 14..481 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:36 Download gff for
BS06968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8823421..8823801 | 14..394 | 99 | <- | Plus |
3R | 8823985..8824071 | 395..481 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:25:32 Download gff for
BS06968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4649707..4649793 | 395..481 | 100 | | Plus |
arm_3R | 4649143..4649523 | 14..394 | 99 | <- | Plus |
BS06968.complete Sequence
497 bp (497 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635678
> BS06968.complete
GAAGTTATCAGTCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGC
GATCGCAGCTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAA
AATGTCGTTGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAA
GAAGGATGTCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCG
ATGTGATGAAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGAC
GCCAAGTTCAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCT
GGCCACCGAGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGA
AGAATACGGACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCAT
TGCTCCATGCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAA
GGTCAAGCAGCAGAAGAAGGTGGCCAACTGAAAGCTTTCTAGACCAT
BS06968.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-RA | 465 | CG9836-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-RA | 955 | CG9836-RA | 107..571 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8823424..8823801 | 481..104 | 1890 | 100 | Minus |
3R | 32079331 | 3R | 8823983..8824071 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:46:58 has no hits.
BS06968.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:25 Download gff for
BS06968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:50 Download gff for
BS06968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 103..570 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:58 Download gff for
BS06968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..570 | 17..480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:25 Download gff for
BS06968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 103..570 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:18 Download gff for
BS06968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..570 | 17..480 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:18 Download gff for
BS06968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8823425..8823801 | 104..480 | 100 | <- | Minus |
3R | 8823985..8824071 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:58 Download gff for
BS06968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4649147..4649523 | 104..480 | 100 | <- | Minus |
arm_3R | 4649707..4649793 | 17..103 | 100 | | Minus |
BS06968.pep Sequence
Translation from 16 to 480
> BS06968.pep
MSLVRNSSRLLRSQLKRVQSVPVALYHENVVEHYENPRNVGSLDKKDVTV
GTGLVGAPACGDVMKLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWV
KGKSIDEAGKLKNTDIAKELRLPPVKLHCSMLAEDAIKAALADYKVKQQK
KVAN*
BS06968.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-PA | 154 | CG9836-PA | 1..154 | 1..154 | 776 | 100 | Plus |