Clone Sequence Records
BS06972.3prime Sequence
660 bp (659 high quality bases) assembled on 2005-12-04
> BS06972.3prime
ATGGTCTAGAAAGCTTCTAGGCAGCGGTCTGGATGACATCGGTGTAGAGC
TTGACCTTAGTGGCAATGCTCATGTCGACGTACTTGTCGCCAATGGAAAC
GATCAGGCCACCAATGATGCTGGGGTCCACGCGGGAAGTGATCTTCAGAG
ACTCGTTGCCCTTCAGGAAAGACTTAAGGGCACCCTCCAGCTGCTTGCTC
TGGGACGCATCCAAGGGCTTGGCGGTGACCACCTCGCAGACGACCTCACC
GCGATGTGCGGCCATGATGGTCTTGTAGGCATTGATCACGGTGTCCAGCT
TCTTTAGACGTCCGTTGTCAGCCAGCAGACCCAACAGATTGACGGTGGCC
GGGGCGAAGCGGAGCTTCTCGGATGCCTCCTTCAGAGCGGTGGCCATGAC
CTTCTTGTTGATGATGGGGCTGGTCACGTACTCGCGCAGCTTCTTGTCGC
TACGGATGGTGGCCTGCAGGGCCGTCAGATCCTTCTCCACCTGATCCAAC
TGGCTCAACTTGGAGGCAGCCGAATACAGGGCGGTAGCATAGCGACCCTC
CAGACCGAACACCTGCACTGGTGGCTTCACCGTCGCCTGGGCGGCAGCGG
AGCTGAGGGTGCGGCTCAAAAGTGCCAATTTGTTAATAGAGGCCATGTCG
ACTGATAACT
BS06972.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4307-PA | 630 | Oscp-RA | 1..630 | 646..17 | 3150 | 100 | Minus |
CG4307-PB | 381 | Oscp-RB | 1..381 | 397..17 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 71..701 | 646..16 | 3155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15265926..15266370 | 617..173 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 15266431..15266589 | 174..16 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:07:23 has no hits.
BS06972.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:01 Download gff for
BS06972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-PA | 1..630 | 17..646 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:55 Download gff for
BS06972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4307-PA | 1..630 | 17..646 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:51:40 Download gff for
BS06972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..707 | 7..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:33 Download gff for
BS06972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..707 | 7..646 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:33 Download gff for
BS06972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15265661..15265690 | 617..646 | 100 | -> | Minus |
3R | 15265927..15266370 | 173..616 | 100 | -> | Minus |
3R | 15266433..15266595 | 7..172 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:51:40 Download gff for
BS06972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091383..11091412 | 617..646 | 100 | -> | Minus |
arm_3R | 11091649..11092092 | 173..616 | 100 | -> | Minus |
arm_3R | 11092155..11092317 | 7..172 | 97 | | Minus |
BS06972.5prime Sequence
660 bp (659 high quality bases) assembled on 2005-12-04
> BS06972.5prime
GAAGTTATCAGTCGACATGGCCTCTATTAACAAATTGGCACTTTTGAGCC
GCACCCTCAGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGTGCAG
GTGTTCGGTCTGGAGGGTCGCTATGCTACCGCCCTGTATTCGGCTGCCTC
CAAGTTGAGCCAGTTGGATCAGGTGGAGAAGGATCTGACGGCCCTGCAGG
CCACCATCCGTAGCGACAAGAAGCTGCGCGAGTACGTGACCAGCCCCATC
ATCAACAAGAAGGTCATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCT
CCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACG
GACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATG
GCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTT
GGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGA
AGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATT
GGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGC
CACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCTAGAAGC
TTTCTAGACC
BS06972.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4307-PA | 630 | Oscp-RA | 1..630 | 17..646 | 3150 | 100 | Plus |
CG4307-PB | 381 | Oscp-RB | 1..381 | 266..646 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 71..701 | 17..647 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15265926..15266370 | 46..490 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 15266431..15266589 | 489..647 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:01:00 has no hits.
BS06972.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:02 Download gff for
BS06972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-PA | 1..630 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:57 Download gff for
BS06972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4307-PA | 1..630 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:12:35 Download gff for
BS06972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..707 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:51 Download gff for
BS06972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..707 | 17..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:51 Download gff for
BS06972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15265661..15265690 | 17..46 | 100 | -> | Plus |
3R | 15265927..15266370 | 47..490 | 100 | -> | Plus |
3R | 15266433..15266595 | 491..656 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:12:35 Download gff for
BS06972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091383..11091412 | 17..46 | 100 | -> | Plus |
arm_3R | 11091649..11092092 | 47..490 | 100 | -> | Plus |
arm_3R | 11092155..11092317 | 491..656 | 97 | | Plus |
BS06972.complete Sequence
662 bp (662 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635679
> BS06972.complete
GAAGTTATCAGTCGACATGGCCTCTATTAACAAATTGGCACTTTTGAGCC
GCACCCTCAGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGTGCAG
GTGTTCGGTCTGGAGGGTCGCTATGCTACCGCCCTGTATTCGGCTGCCTC
CAAGTTGAGCCAGTTGGATCAGGTGGAGAAGGATCTGACGGCCCTGCAGG
CCACCATCCGTAGCGACAAGAAGCTGCGCGAGTACGTGACCAGCCCCATC
ATCAACAAGAAGGTCATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCT
CCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACG
GACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATG
GCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTT
GGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGA
AGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATT
GGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGC
CACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCTAGAAGC
TTTCTAGACCAT
BS06972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 630 | CG4307-PA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 71..701 | 17..647 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15265926..15266370 | 46..490 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 15266431..15266589 | 489..647 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:03:12 has no hits.
BS06972.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:51 Download gff for
BS06972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 1..630 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:44 Download gff for
BS06972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 86..722 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:59 Download gff for
BS06972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..700 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:51 Download gff for
BS06972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 86..722 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:50 Download gff for
BS06972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..700 | 17..646 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:50 Download gff for
BS06972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15265661..15265690 | 17..46 | 100 | -> | Plus |
3R | 15265927..15266370 | 47..490 | 100 | -> | Plus |
3R | 15266433..15266588 | 491..646 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:59 Download gff for
BS06972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091383..11091412 | 17..46 | 100 | -> | Plus |
arm_3R | 11092155..11092310 | 491..646 | 100 | | Plus |
arm_3R | 11091649..11092092 | 47..490 | 100 | -> | Plus |
BS06972.pep Sequence
Translation from 16 to 645
> BS06972.pep
MASINKLALLSRTLSSAAAQATVKPPVQVFGLEGRYATALYSAASKLSQL
DQVEKDLTALQATIRSDKKLREYVTSPIINKKVMATALKEASEKLRFAPA
TVNLLGLLADNGRLKKLDTVINAYKTIMAAHRGEVVCEVVTAKPLDASQS
KQLEGALKSFLKGNESLKITSRVDPSIIGGLIVSIGDKYVDMSIATKVKL
YTDVIQTAA*
BS06972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-PA | 209 | CG4307-PA | 1..209 | 1..209 | 1004 | 100 | Plus |