Clone BS06972 Report

Search the DGRC for BS06972

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptOscp-RA
Protein status:BS06972.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06972.3prime Sequence

660 bp (659 high quality bases) assembled on 2005-12-04

> BS06972.3prime
ATGGTCTAGAAAGCTTCTAGGCAGCGGTCTGGATGACATCGGTGTAGAGC
TTGACCTTAGTGGCAATGCTCATGTCGACGTACTTGTCGCCAATGGAAAC
GATCAGGCCACCAATGATGCTGGGGTCCACGCGGGAAGTGATCTTCAGAG
ACTCGTTGCCCTTCAGGAAAGACTTAAGGGCACCCTCCAGCTGCTTGCTC
TGGGACGCATCCAAGGGCTTGGCGGTGACCACCTCGCAGACGACCTCACC
GCGATGTGCGGCCATGATGGTCTTGTAGGCATTGATCACGGTGTCCAGCT
TCTTTAGACGTCCGTTGTCAGCCAGCAGACCCAACAGATTGACGGTGGCC
GGGGCGAAGCGGAGCTTCTCGGATGCCTCCTTCAGAGCGGTGGCCATGAC
CTTCTTGTTGATGATGGGGCTGGTCACGTACTCGCGCAGCTTCTTGTCGC
TACGGATGGTGGCCTGCAGGGCCGTCAGATCCTTCTCCACCTGATCCAAC
TGGCTCAACTTGGAGGCAGCCGAATACAGGGCGGTAGCATAGCGACCCTC
CAGACCGAACACCTGCACTGGTGGCTTCACCGTCGCCTGGGCGGCAGCGG
AGCTGAGGGTGCGGCTCAAAAGTGCCAATTTGTTAATAGAGGCCATGTCG
ACTGATAACT

BS06972.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4307-PA 630 Oscp-RA 1..630 646..17 3150 100 Minus
CG4307-PB 381 Oscp-RB 1..381 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-RA 802 CG4307-RA 71..701 646..16 3155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15265926..15266370 617..173 2225 100 Minus
3R 32079331 3R 15266431..15266589 174..16 795 100 Minus
Blast to na_te.dros performed on 2015-02-09 01:07:23 has no hits.

BS06972.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:01 Download gff for BS06972.3prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-PA 1..630 17..646 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:55 Download gff for BS06972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4307-PA 1..630 17..646 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:51:40 Download gff for BS06972.3prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..707 7..646 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:33 Download gff for BS06972.3prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..707 7..646 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:33 Download gff for BS06972.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15265661..15265690 617..646 100 -> Minus
3R 15265927..15266370 173..616 100 -> Minus
3R 15266433..15266595 7..172 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:51:40 Download gff for BS06972.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11091383..11091412 617..646 100 -> Minus
arm_3R 11091649..11092092 173..616 100 -> Minus
arm_3R 11092155..11092317 7..172 97   Minus

BS06972.5prime Sequence

660 bp (659 high quality bases) assembled on 2005-12-04

> BS06972.5prime
GAAGTTATCAGTCGACATGGCCTCTATTAACAAATTGGCACTTTTGAGCC
GCACCCTCAGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGTGCAG
GTGTTCGGTCTGGAGGGTCGCTATGCTACCGCCCTGTATTCGGCTGCCTC
CAAGTTGAGCCAGTTGGATCAGGTGGAGAAGGATCTGACGGCCCTGCAGG
CCACCATCCGTAGCGACAAGAAGCTGCGCGAGTACGTGACCAGCCCCATC
ATCAACAAGAAGGTCATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCT
CCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACG
GACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATG
GCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTT
GGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGA
AGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATT
GGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGC
CACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCTAGAAGC
TTTCTAGACC

BS06972.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4307-PA 630 Oscp-RA 1..630 17..646 3150 100 Plus
CG4307-PB 381 Oscp-RB 1..381 266..646 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-RA 802 CG4307-RA 71..701 17..647 3155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15265926..15266370 46..490 2225 100 Plus
3R 32079331 3R 15266431..15266589 489..647 795 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:01:00 has no hits.

BS06972.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:02 Download gff for BS06972.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-PA 1..630 17..646 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:57 Download gff for BS06972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4307-PA 1..630 17..646 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:12:35 Download gff for BS06972.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..707 17..656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:51 Download gff for BS06972.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..707 17..656 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:51 Download gff for BS06972.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15265661..15265690 17..46 100 -> Plus
3R 15265927..15266370 47..490 100 -> Plus
3R 15266433..15266595 491..656 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:12:35 Download gff for BS06972.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11091383..11091412 17..46 100 -> Plus
arm_3R 11091649..11092092 47..490 100 -> Plus
arm_3R 11092155..11092317 491..656 97   Plus

BS06972.complete Sequence

662 bp (662 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635679

> BS06972.complete
GAAGTTATCAGTCGACATGGCCTCTATTAACAAATTGGCACTTTTGAGCC
GCACCCTCAGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGTGCAG
GTGTTCGGTCTGGAGGGTCGCTATGCTACCGCCCTGTATTCGGCTGCCTC
CAAGTTGAGCCAGTTGGATCAGGTGGAGAAGGATCTGACGGCCCTGCAGG
CCACCATCCGTAGCGACAAGAAGCTGCGCGAGTACGTGACCAGCCCCATC
ATCAACAAGAAGGTCATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCT
CCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACG
GACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATG
GCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTT
GGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGA
AGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATT
GGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGC
CACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCTAGAAGC
TTTCTAGACCAT

BS06972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-RA 630 CG4307-PA 1..630 17..646 3150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-RA 802 CG4307-RA 71..701 17..647 3155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15265926..15266370 46..490 2225 100 Plus
3R 32079331 3R 15266431..15266589 489..647 795 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:03:12 has no hits.

BS06972.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:51 Download gff for BS06972.complete
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 1..630 17..646 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:44 Download gff for BS06972.complete
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 86..722 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:59 Download gff for BS06972.complete
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..700 17..646 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:51 Download gff for BS06972.complete
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 86..722 17..656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:50 Download gff for BS06972.complete
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..700 17..646 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:50 Download gff for BS06972.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15265661..15265690 17..46 100 -> Plus
3R 15265927..15266370 47..490 100 -> Plus
3R 15266433..15266588 491..646 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:59 Download gff for BS06972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11091383..11091412 17..46 100 -> Plus
arm_3R 11092155..11092310 491..646 100   Plus
arm_3R 11091649..11092092 47..490 100 -> Plus

BS06972.pep Sequence

Translation from 16 to 645

> BS06972.pep
MASINKLALLSRTLSSAAAQATVKPPVQVFGLEGRYATALYSAASKLSQL
DQVEKDLTALQATIRSDKKLREYVTSPIINKKVMATALKEASEKLRFAPA
TVNLLGLLADNGRLKKLDTVINAYKTIMAAHRGEVVCEVVTAKPLDASQS
KQLEGALKSFLKGNESLKITSRVDPSIIGGLIVSIGDKYVDMSIATKVKL
YTDVIQTAA*

BS06972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-PA 209 CG4307-PA 1..209 1..209 1004 100 Plus