Clone Sequence Records
BS06973.5prime Sequence
714 bp (674 high quality bases) assembled on 2005-12-04
> BS06973.5prime
GAAGTTATCAGTCGACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGT
ACGGCCTACTGGTCACCTGCATTCTCATTGTGACGTGCAACGTGTTCTTC
TTCTCCTGTGGCGTGACCACCTGGGGTTCGGCCGTCTCCGTCTACGGCAG
CTATGGGTCGGCACTTTGCGGAGGAGCAGTTTTCGGAGTCGCCTTCCTGG
GCATGTACGTGGCCTTGAAGGTGTCGTACAAGTATTCCATATACTACCTA
ATTTGCAGTGGCCTGGTTATAGCCGCCCTGGGCTCCTACCTCTTCACCTT
CACGGCGATGCGGGAGCAGCTGATGGGCAGGTTCGAGGAGCGCATGCGCG
ACCTCTTCGAGCGAAAGACCCACAGCGACGACAAGATGCAGCCAGTGCAC
AGCCTCTTCGGCTGCTGCGGCATTGAGGGACCGCAGGACTACCTTCAGGA
GGAGCACGGCGCCCTGCCCAGCAGCTGCTGCTACGCCTTCGACTGCTCCA
AGCCGGCGCACGTCTACGAGGAGGGATGCTCCACCAAGGCGGTAGCTACT
CTGAGAATGCAGGCGGAGCTCAACTACTACAGCTGCATGGCGATCATTGC
CCTCGAGTTTTTGGGCTTGTTCACCGCTTACCATTTGGGCAAGGCTCGCA
AGTATGCCAAAACCAAGATAAAGGACGAGGAGACCCCCATCAACGACTGA
AAGCTTTCTAGACC
BS06973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12143-PA | 684 | Tsp42Ej-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-RA | 1116 | CG12143-RA | 341..1026 | 15..700 | 3430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7041785..7042147 | 245..607 | 1815 | 100 | Plus |
2R | 25286936 | 2R | 7041568..7041730 | 82..244 | 815 | 100 | Plus |
2R | 25286936 | 2R | 7042578..7042672 | 606..700 | 475 | 100 | Plus |
2R | 25286936 | 2R | 7040476..7040543 | 15..82 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:25:28 has no hits.
BS06973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:05 Download gff for
BS06973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12143-PA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:00 Download gff for
BS06973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12143-PA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:54:10 Download gff for
BS06973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 341..1030 | 15..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:09:47 Download gff for
BS06973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 341..1030 | 15..704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:09:47 Download gff for
BS06973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7042580..7042676 | 608..704 | 97 | | Plus |
2R | 7040476..7040543 | 15..82 | 100 | -> | Plus |
2R | 7041569..7041730 | 83..244 | 100 | -> | Plus |
2R | 7041785..7042147 | 245..607 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:10 Download gff for
BS06973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2927981..2928048 | 15..82 | 100 | -> | Plus |
arm_2R | 2929074..2929235 | 83..244 | 100 | -> | Plus |
arm_2R | 2929290..2929652 | 245..607 | 100 | -> | Plus |
arm_2R | 2930085..2930181 | 608..704 | 97 | | Plus |
BS06973.3prime Sequence
714 bp (713 high quality bases) assembled on 2005-12-04
> BS06973.3prime
ATGGTCTAGAAAGCTTTCAGTCGTTGATGGGGGTCTCCTCGTCCTTTATC
TTGGTTTTGGCATACTTGCGAGCCTTGCCCAAATGGTAAGCGGTGAACAA
GCCCAAAAACTCGAGGGCAATGATCGCCATGCAGCTGTAGTAGTTGAGCT
CCGCCTGCATTCTCAGAGTAGCTACCGCCTTGGTGGAGCATCCCTCCTCG
TAGACGTGCGCCGGCTTGGAGCAGTCGAAGGCGTAGCAGCAGCTGCTGGG
CAGGGCGCCGTGCTCCTCCTGAAGGTAGTCCTGCGGTCCCTCAATGCCGC
AGCAGCCGAAGAGGCTGTGCACTGGCTGCATCTTGTCGTCGCTGTGGGTC
TTTCGCTCGAAGAGGTCGCGCATGCGCTCCTCGAACCTGCCCATCAGCTG
CTCCCGCATCGCCGTGAAGGTGAAGAGGTAGGAGCCCAGGGCGGCTATAA
CCAGGCCACTGCAAATTAGGTAGTATATGGAATACTTGTACGACACCTTC
AAGGCCACGTACATGCCCAGGAAGGCGACTCCGAAAACTGCTCCTCCGCA
AAGTGCCGACCCATAGCTGCCGTAGACGGAGACGGCCGAACCCCAGGTGG
TCACGCCACAGGAGAAGAAGAACACGTTGCACGTCACAATGAGAATGCAG
GTGACCAGTAGGCCGTACTTCCAGGGTGTTATGGGAAACGACTTCTCCAT
GTCGACTGATAACT
BS06973.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12143-PA | 684 | Tsp42Ej-RA | 1..684 | 700..17 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-RA | 1116 | CG12143-RA | 341..1026 | 702..17 | 3430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7041785..7042147 | 472..110 | 1815 | 100 | Minus |
2R | 25286936 | 2R | 7041568..7041730 | 635..473 | 815 | 100 | Minus |
2R | 25286936 | 2R | 7042578..7042672 | 111..17 | 475 | 100 | Minus |
2R | 25286936 | 2R | 7040476..7040543 | 702..635 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:35:36 has no hits.
BS06973.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:04 Download gff for
BS06973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12143-PA | 1..684 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:58 Download gff for
BS06973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12143-PA | 1..684 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:04:52 Download gff for
BS06973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 341..1030 | 13..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:46 Download gff for
BS06973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 341..1030 | 13..702 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:46 Download gff for
BS06973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7042580..7042676 | 13..109 | 97 | | Minus |
2R | 7040476..7040543 | 635..702 | 100 | -> | Minus |
2R | 7041569..7041730 | 473..634 | 100 | -> | Minus |
2R | 7041785..7042147 | 110..472 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:04:52 Download gff for
BS06973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2927981..2928048 | 635..702 | 100 | -> | Minus |
arm_2R | 2929074..2929235 | 473..634 | 100 | -> | Minus |
arm_2R | 2929290..2929652 | 110..472 | 100 | -> | Minus |
arm_2R | 2930085..2930181 | 13..109 | 97 | | Minus |
BS06973.complete Sequence
716 bp (716 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635680
> BS06973.complete
GAAGTTATCAGTCGACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGT
ACGGCCTACTGGTCACCTGCATTCTCATTGTGACGTGCAACGTGTTCTTC
TTCTCCTGTGGCGTGACCACCTGGGGTTCGGCCGTCTCCGTCTACGGCAG
CTATGGGTCGGCACTTTGCGGAGGAGCAGTTTTCGGAGTCGCCTTCCTGG
GCATGTACGTGGCCTTGAAGGTGTCGTACAAGTATTCCATATACTACCTA
ATTTGCAGTGGCCTGGTTATAGCCGCCCTGGGCTCCTACCTCTTCACCTT
CACGGCGATGCGGGAGCAGCTGATGGGCAGGTTCGAGGAGCGCATGCGCG
ACCTCTTCGAGCGAAAGACCCACAGCGACGACAAGATGCAGCCAGTGCAC
AGCCTCTTCGGCTGCTGCGGCATTGAGGGACCGCAGGACTACCTTCAGGA
GGAGCACGGCGCCCTGCCCAGCAGCTGCTGCTACGCCTTCGACTGCTCCA
AGCCGGCGCACGTCTACGAGGAGGGATGCTCCACCAAGGCGGTAGCTACT
CTGAGAATGCAGGCGGAGCTCAACTACTACAGCTGCATGGCGATCATTGC
CCTCGAGTTTTTGGGCTTGTTCACCGCTTACCATTTGGGCAAGGCTCGCA
AGTATGCCAAAACCAAGATAAAGGACGAGGAGACCCCCATCAACGACTGA
AAGCTTTCTAGACCAT
BS06973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-RA | 684 | CG12143-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-RA | 1116 | CG12143-RA | 341..1026 | 15..700 | 3430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7041785..7042147 | 245..607 | 1815 | 100 | Plus |
2R | 25286936 | 2R | 7041568..7041730 | 82..244 | 815 | 100 | Plus |
2R | 25286936 | 2R | 7042578..7042672 | 606..700 | 475 | 100 | Plus |
2R | 25286936 | 2R | 7040476..7040543 | 15..82 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:45:57 has no hits.
BS06973.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:26 Download gff for
BS06973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:02 Download gff for
BS06973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 338..1027 | 15..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:05 Download gff for
BS06973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 343..1025 | 17..699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:27 Download gff for
BS06973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 338..1027 | 15..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:46 Download gff for
BS06973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 343..1025 | 17..699 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:46 Download gff for
BS06973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7040478..7040543 | 17..82 | 100 | -> | Plus |
2R | 7041569..7041730 | 83..244 | 100 | -> | Plus |
2R | 7042580..7042671 | 608..699 | 100 | | Plus |
2R | 7041785..7042147 | 245..607 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:05 Download gff for
BS06973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2930085..2930176 | 608..699 | 100 | | Plus |
arm_2R | 2927983..2928048 | 17..82 | 100 | -> | Plus |
arm_2R | 2929074..2929235 | 83..244 | 100 | -> | Plus |
arm_2R | 2929290..2929652 | 245..607 | 100 | -> | Plus |
BS06973.pep Sequence
Translation from 16 to 699
> BS06973.pep
MEKSFPITPWKYGLLVTCILIVTCNVFFFSCGVTTWGSAVSVYGSYGSAL
CGGAVFGVAFLGMYVALKVSYKYSIYYLICSGLVIAALGSYLFTFTAMRE
QLMGRFEERMRDLFERKTHSDDKMQPVHSLFGCCGIEGPQDYLQEEHGAL
PSSCCYAFDCSKPAHVYEEGCSTKAVATLRMQAELNYYSCMAIIALEFLG
LFTAYHLGKARKYAKTKIKDEETPIND*
BS06973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-PA | 227 | CG12143-PA | 1..227 | 1..227 | 1217 | 100 | Plus |