Clone BS06973 Report

Search the DGRC for BS06973

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ej-RA
Protein status:BS06973.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06973.5prime Sequence

714 bp (674 high quality bases) assembled on 2005-12-04

> BS06973.5prime
GAAGTTATCAGTCGACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGT
ACGGCCTACTGGTCACCTGCATTCTCATTGTGACGTGCAACGTGTTCTTC
TTCTCCTGTGGCGTGACCACCTGGGGTTCGGCCGTCTCCGTCTACGGCAG
CTATGGGTCGGCACTTTGCGGAGGAGCAGTTTTCGGAGTCGCCTTCCTGG
GCATGTACGTGGCCTTGAAGGTGTCGTACAAGTATTCCATATACTACCTA
ATTTGCAGTGGCCTGGTTATAGCCGCCCTGGGCTCCTACCTCTTCACCTT
CACGGCGATGCGGGAGCAGCTGATGGGCAGGTTCGAGGAGCGCATGCGCG
ACCTCTTCGAGCGAAAGACCCACAGCGACGACAAGATGCAGCCAGTGCAC
AGCCTCTTCGGCTGCTGCGGCATTGAGGGACCGCAGGACTACCTTCAGGA
GGAGCACGGCGCCCTGCCCAGCAGCTGCTGCTACGCCTTCGACTGCTCCA
AGCCGGCGCACGTCTACGAGGAGGGATGCTCCACCAAGGCGGTAGCTACT
CTGAGAATGCAGGCGGAGCTCAACTACTACAGCTGCATGGCGATCATTGC
CCTCGAGTTTTTGGGCTTGTTCACCGCTTACCATTTGGGCAAGGCTCGCA
AGTATGCCAAAACCAAGATAAAGGACGAGGAGACCCCCATCAACGACTGA
AAGCTTTCTAGACC

BS06973.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12143-PA 684 Tsp42Ej-RA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ej-RA 1116 CG12143-RA 341..1026 15..700 3430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7041785..7042147 245..607 1815 100 Plus
2R 25286936 2R 7041568..7041730 82..244 815 100 Plus
2R 25286936 2R 7042578..7042672 606..700 475 100 Plus
2R 25286936 2R 7040476..7040543 15..82 340 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:25:28 has no hits.

BS06973.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:05 Download gff for BS06973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12143-PA 1..684 17..700 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:00 Download gff for BS06973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12143-PA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:54:10 Download gff for BS06973.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 341..1030 15..704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:09:47 Download gff for BS06973.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 341..1030 15..704 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:09:47 Download gff for BS06973.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7042580..7042676 608..704 97   Plus
2R 7040476..7040543 15..82 100 -> Plus
2R 7041569..7041730 83..244 100 -> Plus
2R 7041785..7042147 245..607 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:10 Download gff for BS06973.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2927981..2928048 15..82 100 -> Plus
arm_2R 2929074..2929235 83..244 100 -> Plus
arm_2R 2929290..2929652 245..607 100 -> Plus
arm_2R 2930085..2930181 608..704 97   Plus

BS06973.3prime Sequence

714 bp (713 high quality bases) assembled on 2005-12-04

> BS06973.3prime
ATGGTCTAGAAAGCTTTCAGTCGTTGATGGGGGTCTCCTCGTCCTTTATC
TTGGTTTTGGCATACTTGCGAGCCTTGCCCAAATGGTAAGCGGTGAACAA
GCCCAAAAACTCGAGGGCAATGATCGCCATGCAGCTGTAGTAGTTGAGCT
CCGCCTGCATTCTCAGAGTAGCTACCGCCTTGGTGGAGCATCCCTCCTCG
TAGACGTGCGCCGGCTTGGAGCAGTCGAAGGCGTAGCAGCAGCTGCTGGG
CAGGGCGCCGTGCTCCTCCTGAAGGTAGTCCTGCGGTCCCTCAATGCCGC
AGCAGCCGAAGAGGCTGTGCACTGGCTGCATCTTGTCGTCGCTGTGGGTC
TTTCGCTCGAAGAGGTCGCGCATGCGCTCCTCGAACCTGCCCATCAGCTG
CTCCCGCATCGCCGTGAAGGTGAAGAGGTAGGAGCCCAGGGCGGCTATAA
CCAGGCCACTGCAAATTAGGTAGTATATGGAATACTTGTACGACACCTTC
AAGGCCACGTACATGCCCAGGAAGGCGACTCCGAAAACTGCTCCTCCGCA
AAGTGCCGACCCATAGCTGCCGTAGACGGAGACGGCCGAACCCCAGGTGG
TCACGCCACAGGAGAAGAAGAACACGTTGCACGTCACAATGAGAATGCAG
GTGACCAGTAGGCCGTACTTCCAGGGTGTTATGGGAAACGACTTCTCCAT
GTCGACTGATAACT

BS06973.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12143-PA 684 Tsp42Ej-RA 1..684 700..17 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ej-RA 1116 CG12143-RA 341..1026 702..17 3430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7041785..7042147 472..110 1815 100 Minus
2R 25286936 2R 7041568..7041730 635..473 815 100 Minus
2R 25286936 2R 7042578..7042672 111..17 475 100 Minus
2R 25286936 2R 7040476..7040543 702..635 340 100 Minus
Blast to na_te.dros performed on 2015-02-02 20:35:36 has no hits.

BS06973.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:04 Download gff for BS06973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12143-PA 1..684 17..700 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:42:58 Download gff for BS06973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12143-PA 1..684 17..700 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:04:52 Download gff for BS06973.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 341..1030 13..702 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:46 Download gff for BS06973.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 341..1030 13..702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:46 Download gff for BS06973.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7042580..7042676 13..109 97   Minus
2R 7040476..7040543 635..702 100 -> Minus
2R 7041569..7041730 473..634 100 -> Minus
2R 7041785..7042147 110..472 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:04:52 Download gff for BS06973.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2927981..2928048 635..702 100 -> Minus
arm_2R 2929074..2929235 473..634 100 -> Minus
arm_2R 2929290..2929652 110..472 100 -> Minus
arm_2R 2930085..2930181 13..109 97   Minus

BS06973.complete Sequence

716 bp (716 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635680

> BS06973.complete
GAAGTTATCAGTCGACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGT
ACGGCCTACTGGTCACCTGCATTCTCATTGTGACGTGCAACGTGTTCTTC
TTCTCCTGTGGCGTGACCACCTGGGGTTCGGCCGTCTCCGTCTACGGCAG
CTATGGGTCGGCACTTTGCGGAGGAGCAGTTTTCGGAGTCGCCTTCCTGG
GCATGTACGTGGCCTTGAAGGTGTCGTACAAGTATTCCATATACTACCTA
ATTTGCAGTGGCCTGGTTATAGCCGCCCTGGGCTCCTACCTCTTCACCTT
CACGGCGATGCGGGAGCAGCTGATGGGCAGGTTCGAGGAGCGCATGCGCG
ACCTCTTCGAGCGAAAGACCCACAGCGACGACAAGATGCAGCCAGTGCAC
AGCCTCTTCGGCTGCTGCGGCATTGAGGGACCGCAGGACTACCTTCAGGA
GGAGCACGGCGCCCTGCCCAGCAGCTGCTGCTACGCCTTCGACTGCTCCA
AGCCGGCGCACGTCTACGAGGAGGGATGCTCCACCAAGGCGGTAGCTACT
CTGAGAATGCAGGCGGAGCTCAACTACTACAGCTGCATGGCGATCATTGC
CCTCGAGTTTTTGGGCTTGTTCACCGCTTACCATTTGGGCAAGGCTCGCA
AGTATGCCAAAACCAAGATAAAGGACGAGGAGACCCCCATCAACGACTGA
AAGCTTTCTAGACCAT

BS06973.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ej-RA 684 CG12143-PA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ej-RA 1116 CG12143-RA 341..1026 15..700 3430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7041785..7042147 245..607 1815 100 Plus
2R 25286936 2R 7041568..7041730 82..244 815 100 Plus
2R 25286936 2R 7042578..7042672 606..700 475 100 Plus
2R 25286936 2R 7040476..7040543 15..82 340 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:45:57 has no hits.

BS06973.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:26 Download gff for BS06973.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:02 Download gff for BS06973.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 338..1027 15..704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:05 Download gff for BS06973.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 343..1025 17..699 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:27 Download gff for BS06973.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 338..1027 15..704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:46 Download gff for BS06973.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 343..1025 17..699 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:46 Download gff for BS06973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7040478..7040543 17..82 100 -> Plus
2R 7041569..7041730 83..244 100 -> Plus
2R 7042580..7042671 608..699 100   Plus
2R 7041785..7042147 245..607 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:05 Download gff for BS06973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2930085..2930176 608..699 100   Plus
arm_2R 2927983..2928048 17..82 100 -> Plus
arm_2R 2929074..2929235 83..244 100 -> Plus
arm_2R 2929290..2929652 245..607 100 -> Plus

BS06973.pep Sequence

Translation from 16 to 699

> BS06973.pep
MEKSFPITPWKYGLLVTCILIVTCNVFFFSCGVTTWGSAVSVYGSYGSAL
CGGAVFGVAFLGMYVALKVSYKYSIYYLICSGLVIAALGSYLFTFTAMRE
QLMGRFEERMRDLFERKTHSDDKMQPVHSLFGCCGIEGPQDYLQEEHGAL
PSSCCYAFDCSKPAHVYEEGCSTKAVATLRMQAELNYYSCMAIIALEFLG
LFTAYHLGKARKYAKTKIKDEETPIND*

BS06973.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ej-PA 227 CG12143-PA 1..227 1..227 1217 100 Plus