Clone Sequence Records
BS06974.3prime Sequence
834 bp (762 high quality bases) assembled on 2005-12-04
> BS06974.3prime
ATGGTCTAGAAAGCTTTTATACTGGGTAGTGGTCCTGACCGGATATACAG
GAATTACGAACGCCATAGATGGCGTCATTAGCTTCGGGCAACTTGCAGAC
TTTGCCAGAGGCAGGACGAGCAAGACGTTGGGAGAGGACACTCAGATCAA
GGTTGTTTACTCGCACCATTAGGGTAGGTTCCTTCTCCACAGATCTACAG
ACCACGATCTTCTGACAATTTACCGGTGATCCGGTTAACTTGGGAGGCAG
GTGCCTGACCGGAGCGTCCGGGAATAGTCCCATGGTTTGAGGACCGACGT
CGACACCCACTTTGGGACTATTACAGGATAGACAAGATAGCCCCGTATTG
ATAAATCCAGCGGCCCTGGGACATGCATCCTTATCCTCAATCAATCTCAG
CCGGCGATCTATATCATCGAAGCGATCGCGTATATACTTCTTAAGAGCAG
GCATATGCACCTTATCCAGCTTGCTGTCGAGCATATCCTGCAGTTCCTCC
ATGGTTCCCAGAAAAGTAAGGTTGTATTCCTGAACAAGAGTCCTCAGACC
TTCGATCTCCACCACACATTGCTTGACTATTTCCAAACGATTAAATAAAG
CTTCGGTTTGCTTAAGAAAAGCCTCAAGTGTGAGGTAGAACTTCTCCAGC
TTGTGGCTGACCTCTTCCATTCGGTCCAGAATGGGTGTGGCTATACGTCG
CATTAGCTTTTTCATGAAGTCCATGTTGGCCAGCAGACTGCATGCGATCT
TGTTGTCCTCATCGCAAACGGTGCACAGATCCTCGCAAGGAGAGGCGTAC
TGTTCGGCCTGGTTGATCTTGTACTTCTTGTCCT
BS06974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10589-PA | 1161 | CG10589-RA | 344..1161 | 834..17 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10589-RA | 1365 | CG10589-RA | 469..1286 | 834..17 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20928294..20929111 | 834..17 | 4090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:05:01 has no hits.
BS06974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:06 Download gff for
BS06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-PA | 344..1161 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:01 Download gff for
BS06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-PA | 344..1161 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:12:17 Download gff for
BS06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-RA | 469..1289 | 11..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:58 Download gff for
BS06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-RA | 469..1289 | 11..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:58 Download gff for
BS06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20928294..20929114 | 11..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:12:17 Download gff for
BS06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20921394..20922214 | 11..834 | 99 | | Minus |
BS06974.5prime Sequence
884 bp (848 high quality bases) assembled on 2005-12-04
> BS06974.5prime
GAAGTTATCAGTCGACATGCCAGCTCATTTGGATTTAACCCTAGAGGAAA
TGACCAGGATTGCTTTGGGTGTGCCCGAGTTAACCCACGTAAATGTGGCT
GTACTCCAAAGTCTTTTGAATGTCCTTCTCAAGAAACTGAACTGTCAGAA
TGATATGGTAAGGATAAGTGGCTTCGAGGGCAAGTGTATGGAGCGCATTC
TCGAGCAATCCAAAATATCTCCACTGCCCTTCGACGTGGAGGCTATTGTT
CCAATTTCCGAGCAATTGGATAAAGTTCAAGAGTTGGACAAACGCATCAA
GCAGCTGGAGTGCAAGTTGGAGTGTCACTTTCAGCAGATTCGCATTTGCA
ACAAGGCCAAGGACAAGAAGTACAAGATCAACCAGGCCGAACAGTACGCC
TCTCCTTGCGAGGATCTGTGCACCGTTTGCGATGAGGACAACAAGATCGC
ATGCAGTCTGCTGGCCAACATGGACTTCATGAAAAAGCTAATGCGACGTA
TAGCCACACCCATTCTGGACCGAATGGAAGAGGTCAGCCACAAGCTGGAG
AAGTTCTACCTCACACTTGAGGCTTTTCTTAAGCAAACCGAAGCTTTATT
TAATCGTTTGGAAATAGTCAAGCAATGTGTGGTGGAGATCGAAGGTCTGA
GGACTCTTGTTCAGGAATACAACCTTACTTTTCTGGGAACCATGGAGGAA
CTGCAGGATATGCTCGACAGCAAGCTGGATAAGGTGCATATGCCTGCTCT
TAAGAAGTATATACGCGATCGCTTCGATGATATAGATCGCCGGCTGAGAT
TGATTGAGGATAAGGATGCATGTCCCAGGGCCGCTGGATTTATCAATACG
GGGCTATCTTGTCTATCCTGTAATAGTCCCAAAG
BS06974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10589-PA | 1161 | CG10589-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10589-RA | 1365 | CG10589-RA | 126..993 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20927951..20928818 | 17..884 | 4340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:33:41 has no hits.
BS06974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:07 Download gff for
BS06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:02 Download gff for
BS06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:41:50 Download gff for
BS06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-RA | 126..993 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:05 Download gff for
BS06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-RA | 126..993 | 17..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:05 Download gff for
BS06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20927951..20928818 | 17..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:41:50 Download gff for
BS06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20921051..20921918 | 17..884 | 100 | | Plus |
BS06974.complete Sequence
1193 bp (1193 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635681
> BS06974.complete
GAAGTTATCAGTCGACATGCCAGCTCATTTGGATTTAACCCTAGAGGAAA
TGACCAGGATTGCTTTGGGTGTGCCCGAGTTAACCCACGTAAATGTGGCT
GTACTCCAAAGTCTTTTGAATGTCCTTCTCAAGAAACTGAACTGTCAGAA
TGATATGGTAAGGATAAGTGGCTTCGAGGGCAAGTGTATGGAGCGCATTC
TCGAGCAATCCAAAATATCTCCACTGCCCTTCGACGTGGAGGCTATTGTT
CCAATTTCCGAGCAATTGGATAAAGTTCAAGAGTTGGACAAACGCATCAA
GCAGCTGGAGTGCAAGTTGGAGTGTCACTTTCAGCAGATTCGCATTTGCA
ACAAGGCCAAGGACAAGAAGTACAAGATCAACCAGGCCGAACAGTACGCC
TCTCCTTGCGAGGATCTGTGCACCGTTTGCGATGAGGACAACAAGATCGC
ATGCAGTCTGCTGGCCAACATGGACTTCATGAAAAAGCTAATGCGACGTA
TAGCCACACCCATTCTGGACCGAATGGAAGAGGTCAGCCACAAGCTGGAG
AAGTTCTACCTCACACTTGAGGCTTTTCTTAAGCAAACCGAAGCTTTATT
TAATCGTTTGGAAATAGTCAAGCAATGTGTGGTGGAGATCGAAGGTCTGA
GGACTCTTGTTCAGGAATACAACCTTACTTTTCTGGGAACCATGGAGGAA
CTGCAGGATATGCTCGACAGCAAGCTGGATAAGGTGCATATGCCTGCTCT
TAAGAAGTATATACGCGATCGCTTCGATGATATAGATCGCCGGCTGAGAT
TGATTGAGGATAAGGATGCATGTCCCAGGGCCGCTGGATTTATCAATACG
GGGCTATCTTGTCTATCCTGTAATAGTCCCAAAGTGGGTGTCGACGTCGG
TCCTCAAACCATGGGACTATTCCCGGACGCTCCGGTCAGGCACCTGCCTC
CCAAGTTAACCGGATCACCGGTAAATTGTCAGAAGATCGTGGTCTGTAGA
TCTGTGGAGAAGGAACCTACCCTAATGGTGCGAGTAAACAACCTTGATCT
GAGTGTCCTCTCCCAACGTCTTGCTCGTCCTGCCTCTGGCAAAGTCTGCA
AGTTGCCCGAAGCTAATGACGCCATCTATGGCGTTCGTAATTCCTGTATA
TCCGGTCAGGACCACTACCCAGTATAAAAGCTTTCTAGACCAT
BS06974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10589-RA | 1161 | CG10589-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10589-RA | 1365 | CG10589-RA | 126..1286 | 17..1177 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20927951..20929111 | 17..1177 | 5805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:12 has no hits.
BS06974.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:29 Download gff for
BS06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-RA | 1..1161 | 17..1177 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:06 Download gff for
BS06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-RA | 126..1289 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:41 Download gff for
BS06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-RA | 126..1284 | 17..1175 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:29 Download gff for
BS06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-RA | 126..1289 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:26 Download gff for
BS06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10589-RA | 126..1284 | 17..1175 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:26 Download gff for
BS06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20927951..20929109 | 17..1175 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:41 Download gff for
BS06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20921051..20922209 | 17..1175 | 100 | | Plus |
BS06974.pep Sequence
Translation from 16 to 1176
> BS06974.pep
MPAHLDLTLEEMTRIALGVPELTHVNVAVLQSLLNVLLKKLNCQNDMVRI
SGFEGKCMERILEQSKISPLPFDVEAIVPISEQLDKVQELDKRIKQLECK
LECHFQQIRICNKAKDKKYKINQAEQYASPCEDLCTVCDEDNKIACSLLA
NMDFMKKLMRRIATPILDRMEEVSHKLEKFYLTLEAFLKQTEALFNRLEI
VKQCVVEIEGLRTLVQEYNLTFLGTMEELQDMLDSKLDKVHMPALKKYIR
DRFDDIDRRLRLIEDKDACPRAAGFINTGLSCLSCNSPKVGVDVGPQTMG
LFPDAPVRHLPPKLTGSPVNCQKIVVCRSVEKEPTLMVRVNNLDLSVLSQ
RLARPASGKVCKLPEANDAIYGVRNSCISGQDHYPV*
BS06974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10589-PA | 386 | CG10589-PA | 1..386 | 1..386 | 1999 | 100 | Plus |
