Clone Sequence Records
BS06979.3prime Sequence
807 bp (806 high quality bases) assembled on 2005-12-04
> BS06979.3prime
ATGGTCTAGAAAGCTTTTAGACTGATGTAACTGAAAACAATAGGAAGTTA
ATTGAGTTTCTTAAGGGAGAACTAACCAACCCGCTGTAGAAATGCTGCAG
GGCCTTGCAGGTGTCCAAACAGGTGTCTGTATCTCCACTGCCTAGCGAAT
TTATGCAGCGGCGCATCAGTTCACCAGTAAGATCCGAAAGTCCAAGTATA
TATTCCGTGGGGTCTACGAAAAACTGGAACTTCTTTGGGCTCTCAACCTG
AGCTATAGCCTGAACATCTTCGCCTTCAGTTGGTTCTTCCTTTGGCTGGC
TGCTCTCCTCGACGTACTGCATCACCGCCTGAATGGCCTGCCAATCTGAA
ACGCTCTTGGTTTCGTTCTCGCCCTCAGCATCCTCGTGGCACAGGTACTC
CATGTAGGTGTAGGCCTCGATAAACTCCTGCAATCCTGGAGAGTAGGAGC
TGCGGAACTGGTAGACATCCTGGTCGCGCAGTTCCAGGGCCACAGCCCTA
AAGTTAACCGCGATCAGCTTGTTCAGTCGCTGACGTGCCTCCTCCAGGAC
CTTCTCCTTATTCTGCTTACGCGAGTCAATGGAGTGCAGCAGGAAGATGA
TACGCTTGGACTCGATGGTAATGTCACGGCTCAGCTTGACAATTCGCTCG
TGGCGATCGTGTTTCATGATCAATTCATTAGAATAAATTCGAAATTGTTG
GACAATGGGACTGTCTTCATCCAGCTGGGCAGCCGGTATTTGGCGCTTCC
TGGGAGCAGTGTTCCTGTGACCAGCACCTCCGTTTTTCGGCATGTCGACT
GATAACT
BS06979.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5063-PA | 777 | Trax-RA | 1..777 | 793..17 | 3885 | 100 | Minus |
| CG5063-PB | 879 | Trax-RB | 1..717 | 793..77 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-RA | 1127 | CG5063-RA | 134..911 | 793..16 | 3890 | 100 | Minus |
| Trax-RB | 1077 | CG5063-RB | 134..846 | 793..81 | 3565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15361825..15362602 | 793..16 | 3890 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 14:36:04 has no hits.
BS06979.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:14 Download gff for
BS06979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:12 Download gff for
BS06979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5063-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:04:41 Download gff for
BS06979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 126..919 | 5..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:35:50 Download gff for
BS06979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 126..919 | 5..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:35:50 Download gff for
BS06979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15361817..15362610 | 5..804 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:04:41 Download gff for
BS06979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11187539..11188332 | 5..804 | 99 | | Minus |
BS06979.5prime Sequence
807 bp (806 high quality bases) assembled on 2005-12-04
> BS06979.5prime
GAAGTTATCAGTCGACATGCCGAAAAACGGAGGTGCTGGTCACAGGAACA
CTGCTCCCAGGAAGCGCCAAATACCGGCTGCCCAGCTGGATGAAGACAGT
CCCATTGTCCAACAATTTCGAATTTATTCTAATGAATTGATCATGAAACA
CGATCGCCACGAGCGAATTGTCAAGCTGAGCCGTGACATTACCATCGAGT
CCAAGCGTATCATCTTCCTGCTGCACTCCATTGACTCGCGTAAGCAGAAT
AAGGAGAAGGTCCTGGAGGAGGCACGTCAGCGACTGAACAAGCTGATCGC
GGTTAACTTTAGGGCTGTGGCCCTGGAACTGCGCGACCAGGATGTCTACC
AGTTCCGCAGCTCCTACTCTCCAGGATTGCAGGAGTTTATCGAGGCCTAC
ACCTACATGGAGTACCTGTGCCACGAGGATGCTGAGGGCGAGAACGAAAC
CAAGAGCGTTTCAGATTGGCAGGCCATTCAGGCGGTGATGCAGTACGTCG
AGGAGAGCAGCCAGCCAAAGGAAGAACCAACTGAAGGCGAAGATGTTCAG
GCTATAGCTCAGGTTGAGAGCCCAAAGAAGTTCCAGTTTTTCGTAGACCC
CACGGAATATATACTTGGACTTTCGGATCTTACTGGTGAACTGATGCGCC
GCTGCATAAATTCGCTAGGCAGTGGAGATACAGACACCTGTTTGGACACC
TGCAAGGCCCTGCAGCATTTCTACAGCGGGTTGGTTAGTTCTCCCTTAAG
AAACTCAATTAACTTCCTATTGTTTTCAGTTACATCAGTCTAAAAGCTTT
CTAGACC
BS06979.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5063-PA | 777 | Trax-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
| CG5063-PB | 879 | Trax-RB | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-RA | 1127 | CG5063-RA | 134..911 | 17..794 | 3890 | 100 | Plus |
| Trax-RB | 1077 | CG5063-RB | 134..846 | 17..729 | 3565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15361825..15362602 | 17..794 | 3890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:02:11 has no hits.
BS06979.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:15 Download gff for
BS06979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:14 Download gff for
BS06979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5063-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:33 Download gff for
BS06979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 126..919 | 6..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:22 Download gff for
BS06979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 126..919 | 6..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:22 Download gff for
BS06979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15361817..15362610 | 6..805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:33 Download gff for
BS06979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11187539..11188332 | 6..805 | 99 | | Plus |
BS06979.complete Sequence
809 bp (809 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635682
> BS06979.complete
GAAGTTATCAGTCGACATGCCGAAAAACGGAGGTGCTGGTCACAGGAACA
CTGCTCCCAGGAAGCGCCAAATACCGGCTGCCCAGCTGGATGAAGACAGT
CCCATTGTCCAACAATTTCGAATTTATTCTAATGAATTGATCATGAAACA
CGATCGCCACGAGCGAATTGTCAAGCTGAGCCGTGACATTACCATCGAGT
CCAAGCGTATCATCTTCCTGCTGCACTCCATTGACTCGCGTAAGCAGAAT
AAGGAGAAGGTCCTGGAGGAGGCACGTCAGCGACTGAACAAGCTGATCGC
GGTTAACTTTAGGGCTGTGGCCCTGGAACTGCGCGACCAGGATGTCTACC
AGTTCCGCAGCTCCTACTCTCCAGGATTGCAGGAGTTTATCGAGGCCTAC
ACCTACATGGAGTACCTGTGCCACGAGGATGCTGAGGGCGAGAACGAAAC
CAAGAGCGTTTCAGATTGGCAGGCCATTCAGGCGGTGATGCAGTACGTCG
AGGAGAGCAGCCAGCCAAAGGAAGAACCAACTGAAGGCGAAGATGTTCAG
GCTATAGCTCAGGTTGAGAGCCCAAAGAAGTTCCAGTTTTTCGTAGACCC
CACGGAATATATACTTGGACTTTCGGATCTTACTGGTGAACTGATGCGCC
GCTGCATAAATTCGCTAGGCAGTGGAGATACAGACACCTGTTTGGACACC
TGCAAGGCCCTGCAGCATTTCTACAGCGGGTTGGTTAGTTCTCCCTTAAG
AAACTCAATTAACTTCCTATTGTTTTCAGTTACATCAGTCTAAAAGCTTT
CTAGACCAT
BS06979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-RA | 777 | CG5063-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
| Trax-RB | 897 | CG5063-PB | 1..713 | 17..729 | 3565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-RA | 1127 | CG5063-RA | 134..911 | 17..794 | 3890 | 100 | Plus |
| Trax-RB | 1077 | CG5063-RB | 134..846 | 17..729 | 3565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15361825..15362602 | 17..794 | 3890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:41:33 has no hits.
BS06979.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:30 Download gff for
BS06979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:07 Download gff for
BS06979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 94..887 | 6..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:55 Download gff for
BS06979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 134..908 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:31 Download gff for
BS06979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 94..887 | 6..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:52 Download gff for
BS06979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 134..908 | 17..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:52 Download gff for
BS06979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15361825..15362599 | 17..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:55 Download gff for
BS06979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11187547..11188321 | 17..791 | 100 | | Plus |
BS06979.pep Sequence
Translation from 16 to 792
> BS06979.pep
MPKNGGAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIMKHDRHER
IVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRA
VALELRDQDVYQFRSSYSPGLQEFIEAYTYMEYLCHEDAEGENETKSVSD
WQAIQAVMQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYIL
GLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSGLVSSPLRNSINF
LLFSVTSV*
BS06979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-PA | 258 | CG5063-PA | 1..258 | 1..258 | 1322 | 100 | Plus |
| Trax-PB | 298 | CG5063-PB | 1..241 | 1..241 | 1235 | 99.2 | Plus |
