Clone BS06980 Report

Search the DGRC for BS06980

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptcalypso-RA
Protein status:BS06980.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06980.3prime Sequence

970 bp (847 high quality bases) assembled on 2005-12-04

> BS06980.3prime
ATGGTCTAGAAAGCTTCTACTTCCGTTTTCTGCACTTGTTGCGTCCCTTT
CGCCTCCTGCCTGGCGTTTTGCTTGGCGACTTGCCATTCTTAGCGGCCGC
AGCCTGCTGTTGCTGAGTCTTGGGCGTGGATGCAGTGCCTGCTGCGGTGC
TTCCGCCTGCACTGGCGGTGGTGCTCTGCTTGCTGATCCGATTGGCAGCA
CCCTGGCCACTGACCTTCTTCGACGGAAGCAAATGCTGGCTAACCAGCTC
GCCCAGGACGCCCTGGTGGGCCAGCATAGAGAGGAAAGTGCAAATGAACT
TATCGTAGTTGTGGGTACGTCGACTGGCGTCCACCTTAAACATGTGCCTC
CGATCGTTTTCGTCAGCCAGATGCTGCTCATTGATGGCTATTTCTGTGTC
CAGGTTCTTGAGAAGCGATTGCAGGTCACGTGCGGTGAAAGCGCTCGGCT
CCAATAATGTGGTGGGTGTATCCGGACGTTGTGAGTCTCCGTTCCCCGAT
TCGCCCTGCTCGTCGGCCTTTAGAAGTTTCTGCAGTGTTCCGGACACGAT
TGCCTGGTTTGTGCGCAGCATCTTAAGTTTATGTGTTATGGCAATCCGCC
TGTCTGGCACTACGGCCATGAGATTGAAACGTATGTCCTGTTCGCCGGTC
GCTATTCCCAGTCGCTCAGCCATCACACGTCGGAACTTATCTGTCCAATC
CTCGCTATCCTCCCAACCGCCGTGATTCATGGGATACGGTTTCAAGCCAT
CCAGCTCAAACAGTTGTCCATTGATAGGCACAAAGCTAACGAAGTGAAAC
GCCTCACCCGTGAAGCGGCAACTTGAGACGCCCGCTCCCGTCCTTTCTAG
ACNGCGCCGAGCCTGCGGCATTGCGTGTGAGTTATGGGCACAGGCCAGCT
CCGGAGTGTTGCCAATAGCCAGCCCCTTGTTCTCCGGACTCCTGCCTTTT
GGTGTGGGTTTTTAGTCAAC

BS06980.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8445-PA 1416 CG8445-RA 484..1416 949..17 4621 99.7 Minus
CG8445-PB 1416 CG8445-RB 484..1416 949..17 4621 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
calypso-RA 2147 CG8445-RA 825..1774 967..17 4704 99.7 Minus
calypso-RB 2117 CG8445-RB 795..1744 967..17 4704 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16194435..16195384 17..967 4679 99.7 Plus
Blast to na_te.dros performed on 2015-02-11 16:48:33 has no hits.

BS06980.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:16 Download gff for BS06980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8445-PB 464..1416 17..970 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:15 Download gff for BS06980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8445-PB 464..1416 17..970 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:45:43 Download gff for BS06980.3prime
Subject Subject Range Query Range Percent Splice Strand
calypso-RB 792..1746 13..970 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:05 Download gff for BS06980.3prime
Subject Subject Range Query Range Percent Splice Strand
calypso-RB 792..1746 13..970 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:05 Download gff for BS06980.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16194433..16195387 13..970 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:45:43 Download gff for BS06980.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12081938..12082892 13..970 99   Plus

BS06980.5prime Sequence

929 bp (843 high quality bases) assembled on 2005-12-04

> BS06980.5prime
GAAGTTATCAGTCGACATGAACGCTGCTGGAGGAGGTAGTGGTGCCCAGG
CGGCCGCAGTGGCGGCAGGCAACAACAGTCTCAGCCACAATGCGCTACTT
TCCACGGCCTCAGGAGCCACCACCATGCCTATGGCCCAACTGGCAGACGG
TTGGTTGGAGCTGGAGTCCGACCCAGGTCTCTTCACACTGCTTCTCAAGG
ATTTTGGATGTCACGATGTACAGGTGGAGGAGGTGTACGACCTACAGAAA
CCCATCGAGAGTCCATATGGCTTCATATTTCTCTTCCGCTGGATCGAAGA
GCGACGCGCCAGACGCAAAATTGTGGAGACAACTGCTGAGATATTCGTCA
AGGATGAGGAGGCCATTTCCAGCATTTTCTTCGCCCAGCAGGTAGTCCCC
AATAGCTGTGCCACACACGCGTTGCTTTCGGTGCTCCTGAACTGCAACGA
GAACAATCTTCAGCTGGGCGACACCCTGAGTCGACTAAAAACCCACACCA
AAGGCATGAGTCCGGAGAACAAGGGGCTGGCTATTGGCAACACTCCGGAG
CTGGCCTGTGCCCATAACTCACACGCAATGCCGCAGGCTCGGCGCCGTCT
AGAAAGGACGGGAGCGGGCGTCTCAAGTTGCCGCTTCACGGGTGAGGCGT
TTCACTTCGTTAGCTTTGTGCCTATCAATGGACAACTGTTTGAGCTGGAT
GGCTTGAAACCGTATCCCATGAATCACGGCGGTTGGGAGGATAGCGAGGA
TTGGACAGATAAGTTCCGACGTGTGATGGCTGAGCGACTGGGAATAGCGA
CCGGCGAACAGGACATACGTTTCAATCTCATGGCCGTAGTGCCAGACAGG
CGGATTGCCATAACACATAAACTTAAGATGCTGCGCACAAACCCAGGCAT
CGTGTCCGGAACACTGCAGAAACTTCTAA

BS06980.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8445-PA 1416 CG8445-RA 1..877 17..893 4385 100 Plus
CG8445-PB 1416 CG8445-RB 1..877 17..893 4385 100 Plus
CG8445-PA 1416 CG8445-RA 883..913 899..929 155 100 Plus
CG8445-PB 1416 CG8445-RB 883..913 899..929 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
calypso-RA 2147 CG8445-RA 359..1271 17..929 4520 99.8 Plus
calypso-RB 2117 CG8445-RB 329..1241 17..929 4520 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16194938..16195657 929..210 3540 99.4 Minus
2R 25286936 2R 16195715..16195909 211..17 975 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:33:37 has no hits.

BS06980.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:17 Download gff for BS06980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8445-PB 1..911 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:16 Download gff for BS06980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8445-PB 1..911 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:41:47 Download gff for BS06980.5prime
Subject Subject Range Query Range Percent Splice Strand
calypso-RB 329..1241 17..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:01 Download gff for BS06980.5prime
Subject Subject Range Query Range Percent Splice Strand
calypso-RB 329..1241 17..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:01 Download gff for BS06980.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16194938..16195657 210..929 99 <- Minus
2R 16195717..16195909 17..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:41:47 Download gff for BS06980.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12082443..12083162 210..929 99 <- Minus
arm_2R 12083222..12083414 17..209 100   Minus

BS06980.complete Sequence

1448 bp (1448 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635683

> BS06980.complete
GAAGTTATCAGTCGACATGAACGCTGCTGGAGGAGGTAGTGGTGCCCAGG
CGGCCGCAGTGGCGGCAGGCAACAACAGTCTCAGCCACAATGCGCTACTT
TCCACGGCCTCAGGAGCCACCACCATGCCTATGGCCCAACTGGCAGACGG
TTGGTTGGAGCTGGAGTCCGACCCAGGTCTCTTCACACTGCTTCTCAAGG
ATTTTGGATGTCACGATGTACAGGTGGAGGAGGTGTACGACCTACAGAAA
CCCATCGAGAGTCCATATGGCTTCATATTTCTCTTCCGCTGGATCGAAGA
GCGACGCGCCAGACGCAAAATTGTGGAGACAACTGCTGAGATATTCGTCA
AGGATGAGGAGGCCATTTCCAGCATTTTCTTCGCCCAGCAGGTAGTCCCC
AATAGCTGTGCCACACACGCGTTGCTTTCGGTGCTCCTGAACTGCAACGA
GAACAATCTTCAGCTGGGCGACACCCTGAGTCGACTAAAAACCCACACCA
AAGGCATGAGTCCGGAGAACAAGGGGCTGGCTATTGGCAACACTCCGGAG
CTGGCCTGTGCCCATAACTCACACGCAATGCCGCAGGCTCGGCGCCGTCT
AGAAAGGACGGGAGCGGGCGTCTCAAGTTGCCGCTTCACGGGTGAGGCGT
TTCACTTCGTTAGCTTTGTGCCTATCAATGGACAACTGTTTGAGCTGGAT
GGCTTGAAACCGTATCCCATGAATCACGGCGGTTGGGAGGATAGCGAGGA
TTGGACAGATAAGTTCCGACGTGTGATGGCTGAGCGACTGGGAATAGCGA
CCGGCGAACAGGACATACGTTTCAATCTCATGGCCGTAGTGCCAGACAGG
CGGATTGCCATAACACATAAACTTAAGATGCTGCGCACAAACCAGGCAAT
CGTGTCCGGAACACTGCAGAAACTTCTAAAGGCCGACGAGCAGGGCGAAT
CGGGGAACGGAGACTCACAACGTCCGGATACACCCACCACATTATTGGAG
CCGAGCGCTTTCACCGCACGTGACCTGCAATCGCTTCTCAAGAACCTGGA
CACAGAAATAGCCATCAATGAGCAGCATCTGGCTGACGAAAACGATCGGA
GGCACATGTTTAAGGTGGACGCCAGTCGACGTACCCACAACTACGATAAG
TTCATTTGCACTTTCCTCTCTATGCTGGCCCACCAGGGCGTCCTGGGCGA
GCTGGTTAGCCAGCATTTGCTTCCGTCGAAGAAGGTCAGTGGCCAGGGTG
CTGCCAATCGGATCAGCAAGCAGAGCACCACCGCCAGTGCAGGCGGAAGC
ACCGCAGCAGGCACTGCATCCACGCCCAAGACTCAGCAACAGCAGGCTGC
GGCCGCTAAGAATGGCAAGTCGCCAAGCAAAACGCCAGGCAGGAGGCGAA
AGGGACGCAACAAGTGCAGAAAACGGAAGTAGAAGCTTTCTAGACCAT

BS06980.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
calypso-RA 1416 CG8445-PA 1..1416 17..1432 7080 100 Plus
calypso-RB 1416 CG8445-PB 1..1416 17..1432 7080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
calypso-RA 2147 CG8445-RA 359..1774 17..1432 7080 100 Plus
calypso-RB 2117 CG8445-RB 329..1744 17..1432 7080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16194435..16195657 1432..210 6115 100 Minus
2R 25286936 2R 16195715..16195909 211..17 975 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:23:39 has no hits.

BS06980.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:32 Download gff for BS06980.complete
Subject Subject Range Query Range Percent Splice Strand
CG8445-RB 1..1416 17..1432 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:09 Download gff for BS06980.complete
Subject Subject Range Query Range Percent Splice Strand
CG8445-RB 298..1715 17..1436 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:12 Download gff for BS06980.complete
Subject Subject Range Query Range Percent Splice Strand
calypso-RB 329..1744 17..1432 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:32 Download gff for BS06980.complete
Subject Subject Range Query Range Percent Splice Strand
CG8445-RB 298..1715 17..1436 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:19 Download gff for BS06980.complete
Subject Subject Range Query Range Percent Splice Strand
calypso-RB 329..1744 17..1432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:19 Download gff for BS06980.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16194435..16195657 210..1432 100 <- Minus
2R 16195717..16195909 17..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:12 Download gff for BS06980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12081940..12083162 210..1432 100 <- Minus
arm_2R 12083222..12083414 17..209 100   Minus

BS06980.pep Sequence

Translation from 16 to 1431

> BS06980.pep
MNAAGGGSGAQAAAVAAGNNSLSHNALLSTASGATTMPMAQLADGWLELE
SDPGLFTLLLKDFGCHDVQVEEVYDLQKPIESPYGFIFLFRWIEERRARR
KIVETTAEIFVKDEEAISSIFFAQQVVPNSCATHALLSVLLNCNENNLQL
GDTLSRLKTHTKGMSPENKGLAIGNTPELACAHNSHAMPQARRRLERTGA
GVSSCRFTGEAFHFVSFVPINGQLFELDGLKPYPMNHGGWEDSEDWTDKF
RRVMAERLGIATGEQDIRFNLMAVVPDRRIAITHKLKMLRTNQAIVSGTL
QKLLKADEQGESGNGDSQRPDTPTTLLEPSAFTARDLQSLLKNLDTEIAI
NEQHLADENDRRHMFKVDASRRTHNYDKFICTFLSMLAHQGVLGELVSQH
LLPSKKVSGQGAANRISKQSTTASAGGSTAAGTASTPKTQQQQAAAAKNG
KSPSKTPGRRRKGRNKCRKRK*

BS06980.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
calypso-PA 471 CG8445-PA 1..471 1..471 2429 100 Plus
calypso-PB 471 CG8445-PB 1..471 1..471 2429 100 Plus
Uch-L5-PB 324 CG3431-PB 1..300 39..393 444 31.9 Plus
Uch-L5-PA 324 CG3431-PA 1..300 39..393 444 31.9 Plus
Uch-L5R-PA 340 CG1950-PA 15..314 36..393 433 30.9 Plus