Clone Sequence Records
BS06980.3prime Sequence
970 bp (847 high quality bases) assembled on 2005-12-04
> BS06980.3prime
ATGGTCTAGAAAGCTTCTACTTCCGTTTTCTGCACTTGTTGCGTCCCTTT
CGCCTCCTGCCTGGCGTTTTGCTTGGCGACTTGCCATTCTTAGCGGCCGC
AGCCTGCTGTTGCTGAGTCTTGGGCGTGGATGCAGTGCCTGCTGCGGTGC
TTCCGCCTGCACTGGCGGTGGTGCTCTGCTTGCTGATCCGATTGGCAGCA
CCCTGGCCACTGACCTTCTTCGACGGAAGCAAATGCTGGCTAACCAGCTC
GCCCAGGACGCCCTGGTGGGCCAGCATAGAGAGGAAAGTGCAAATGAACT
TATCGTAGTTGTGGGTACGTCGACTGGCGTCCACCTTAAACATGTGCCTC
CGATCGTTTTCGTCAGCCAGATGCTGCTCATTGATGGCTATTTCTGTGTC
CAGGTTCTTGAGAAGCGATTGCAGGTCACGTGCGGTGAAAGCGCTCGGCT
CCAATAATGTGGTGGGTGTATCCGGACGTTGTGAGTCTCCGTTCCCCGAT
TCGCCCTGCTCGTCGGCCTTTAGAAGTTTCTGCAGTGTTCCGGACACGAT
TGCCTGGTTTGTGCGCAGCATCTTAAGTTTATGTGTTATGGCAATCCGCC
TGTCTGGCACTACGGCCATGAGATTGAAACGTATGTCCTGTTCGCCGGTC
GCTATTCCCAGTCGCTCAGCCATCACACGTCGGAACTTATCTGTCCAATC
CTCGCTATCCTCCCAACCGCCGTGATTCATGGGATACGGTTTCAAGCCAT
CCAGCTCAAACAGTTGTCCATTGATAGGCACAAAGCTAACGAAGTGAAAC
GCCTCACCCGTGAAGCGGCAACTTGAGACGCCCGCTCCCGTCCTTTCTAG
ACNGCGCCGAGCCTGCGGCATTGCGTGTGAGTTATGGGCACAGGCCAGCT
CCGGAGTGTTGCCAATAGCCAGCCCCTTGTTCTCCGGACTCCTGCCTTTT
GGTGTGGGTTTTTAGTCAAC
BS06980.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8445-PA | 1416 | CG8445-RA | 484..1416 | 949..17 | 4621 | 99.7 | Minus |
CG8445-PB | 1416 | CG8445-RB | 484..1416 | 949..17 | 4621 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
calypso-RA | 2147 | CG8445-RA | 825..1774 | 967..17 | 4704 | 99.7 | Minus |
calypso-RB | 2117 | CG8445-RB | 795..1744 | 967..17 | 4704 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16194435..16195384 | 17..967 | 4679 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:48:33 has no hits.
BS06980.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:16 Download gff for
BS06980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-PB | 464..1416 | 17..970 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:15 Download gff for
BS06980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-PB | 464..1416 | 17..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:45:43 Download gff for
BS06980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 792..1746 | 13..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:05 Download gff for
BS06980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 792..1746 | 13..970 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:05 Download gff for
BS06980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16194433..16195387 | 13..970 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:45:43 Download gff for
BS06980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12081938..12082892 | 13..970 | 99 | | Plus |
BS06980.5prime Sequence
929 bp (843 high quality bases) assembled on 2005-12-04
> BS06980.5prime
GAAGTTATCAGTCGACATGAACGCTGCTGGAGGAGGTAGTGGTGCCCAGG
CGGCCGCAGTGGCGGCAGGCAACAACAGTCTCAGCCACAATGCGCTACTT
TCCACGGCCTCAGGAGCCACCACCATGCCTATGGCCCAACTGGCAGACGG
TTGGTTGGAGCTGGAGTCCGACCCAGGTCTCTTCACACTGCTTCTCAAGG
ATTTTGGATGTCACGATGTACAGGTGGAGGAGGTGTACGACCTACAGAAA
CCCATCGAGAGTCCATATGGCTTCATATTTCTCTTCCGCTGGATCGAAGA
GCGACGCGCCAGACGCAAAATTGTGGAGACAACTGCTGAGATATTCGTCA
AGGATGAGGAGGCCATTTCCAGCATTTTCTTCGCCCAGCAGGTAGTCCCC
AATAGCTGTGCCACACACGCGTTGCTTTCGGTGCTCCTGAACTGCAACGA
GAACAATCTTCAGCTGGGCGACACCCTGAGTCGACTAAAAACCCACACCA
AAGGCATGAGTCCGGAGAACAAGGGGCTGGCTATTGGCAACACTCCGGAG
CTGGCCTGTGCCCATAACTCACACGCAATGCCGCAGGCTCGGCGCCGTCT
AGAAAGGACGGGAGCGGGCGTCTCAAGTTGCCGCTTCACGGGTGAGGCGT
TTCACTTCGTTAGCTTTGTGCCTATCAATGGACAACTGTTTGAGCTGGAT
GGCTTGAAACCGTATCCCATGAATCACGGCGGTTGGGAGGATAGCGAGGA
TTGGACAGATAAGTTCCGACGTGTGATGGCTGAGCGACTGGGAATAGCGA
CCGGCGAACAGGACATACGTTTCAATCTCATGGCCGTAGTGCCAGACAGG
CGGATTGCCATAACACATAAACTTAAGATGCTGCGCACAAACCCAGGCAT
CGTGTCCGGAACACTGCAGAAACTTCTAA
BS06980.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8445-PA | 1416 | CG8445-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
CG8445-PB | 1416 | CG8445-RB | 1..877 | 17..893 | 4385 | 100 | Plus |
CG8445-PA | 1416 | CG8445-RA | 883..913 | 899..929 | 155 | 100 | Plus |
CG8445-PB | 1416 | CG8445-RB | 883..913 | 899..929 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
calypso-RA | 2147 | CG8445-RA | 359..1271 | 17..929 | 4520 | 99.8 | Plus |
calypso-RB | 2117 | CG8445-RB | 329..1241 | 17..929 | 4520 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16194938..16195657 | 929..210 | 3540 | 99.4 | Minus |
2R | 25286936 | 2R | 16195715..16195909 | 211..17 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:33:37 has no hits.
BS06980.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:17 Download gff for
BS06980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-PB | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:16 Download gff for
BS06980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-PB | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:41:47 Download gff for
BS06980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 329..1241 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:01 Download gff for
BS06980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 329..1241 | 17..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:01 Download gff for
BS06980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16194938..16195657 | 210..929 | 99 | <- | Minus |
2R | 16195717..16195909 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:41:47 Download gff for
BS06980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12082443..12083162 | 210..929 | 99 | <- | Minus |
arm_2R | 12083222..12083414 | 17..209 | 100 | | Minus |
BS06980.complete Sequence
1448 bp (1448 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635683
> BS06980.complete
GAAGTTATCAGTCGACATGAACGCTGCTGGAGGAGGTAGTGGTGCCCAGG
CGGCCGCAGTGGCGGCAGGCAACAACAGTCTCAGCCACAATGCGCTACTT
TCCACGGCCTCAGGAGCCACCACCATGCCTATGGCCCAACTGGCAGACGG
TTGGTTGGAGCTGGAGTCCGACCCAGGTCTCTTCACACTGCTTCTCAAGG
ATTTTGGATGTCACGATGTACAGGTGGAGGAGGTGTACGACCTACAGAAA
CCCATCGAGAGTCCATATGGCTTCATATTTCTCTTCCGCTGGATCGAAGA
GCGACGCGCCAGACGCAAAATTGTGGAGACAACTGCTGAGATATTCGTCA
AGGATGAGGAGGCCATTTCCAGCATTTTCTTCGCCCAGCAGGTAGTCCCC
AATAGCTGTGCCACACACGCGTTGCTTTCGGTGCTCCTGAACTGCAACGA
GAACAATCTTCAGCTGGGCGACACCCTGAGTCGACTAAAAACCCACACCA
AAGGCATGAGTCCGGAGAACAAGGGGCTGGCTATTGGCAACACTCCGGAG
CTGGCCTGTGCCCATAACTCACACGCAATGCCGCAGGCTCGGCGCCGTCT
AGAAAGGACGGGAGCGGGCGTCTCAAGTTGCCGCTTCACGGGTGAGGCGT
TTCACTTCGTTAGCTTTGTGCCTATCAATGGACAACTGTTTGAGCTGGAT
GGCTTGAAACCGTATCCCATGAATCACGGCGGTTGGGAGGATAGCGAGGA
TTGGACAGATAAGTTCCGACGTGTGATGGCTGAGCGACTGGGAATAGCGA
CCGGCGAACAGGACATACGTTTCAATCTCATGGCCGTAGTGCCAGACAGG
CGGATTGCCATAACACATAAACTTAAGATGCTGCGCACAAACCAGGCAAT
CGTGTCCGGAACACTGCAGAAACTTCTAAAGGCCGACGAGCAGGGCGAAT
CGGGGAACGGAGACTCACAACGTCCGGATACACCCACCACATTATTGGAG
CCGAGCGCTTTCACCGCACGTGACCTGCAATCGCTTCTCAAGAACCTGGA
CACAGAAATAGCCATCAATGAGCAGCATCTGGCTGACGAAAACGATCGGA
GGCACATGTTTAAGGTGGACGCCAGTCGACGTACCCACAACTACGATAAG
TTCATTTGCACTTTCCTCTCTATGCTGGCCCACCAGGGCGTCCTGGGCGA
GCTGGTTAGCCAGCATTTGCTTCCGTCGAAGAAGGTCAGTGGCCAGGGTG
CTGCCAATCGGATCAGCAAGCAGAGCACCACCGCCAGTGCAGGCGGAAGC
ACCGCAGCAGGCACTGCATCCACGCCCAAGACTCAGCAACAGCAGGCTGC
GGCCGCTAAGAATGGCAAGTCGCCAAGCAAAACGCCAGGCAGGAGGCGAA
AGGGACGCAACAAGTGCAGAAAACGGAAGTAGAAGCTTTCTAGACCAT
BS06980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
calypso-RA | 1416 | CG8445-PA | 1..1416 | 17..1432 | 7080 | 100 | Plus |
calypso-RB | 1416 | CG8445-PB | 1..1416 | 17..1432 | 7080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
calypso-RA | 2147 | CG8445-RA | 359..1774 | 17..1432 | 7080 | 100 | Plus |
calypso-RB | 2117 | CG8445-RB | 329..1744 | 17..1432 | 7080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16194435..16195657 | 1432..210 | 6115 | 100 | Minus |
2R | 25286936 | 2R | 16195715..16195909 | 211..17 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:23:39 has no hits.
BS06980.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:32 Download gff for
BS06980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-RB | 1..1416 | 17..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:09 Download gff for
BS06980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-RB | 298..1715 | 17..1436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:12 Download gff for
BS06980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 329..1744 | 17..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:32 Download gff for
BS06980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-RB | 298..1715 | 17..1436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:19 Download gff for
BS06980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 329..1744 | 17..1432 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:19 Download gff for
BS06980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16194435..16195657 | 210..1432 | 100 | <- | Minus |
2R | 16195717..16195909 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:12 Download gff for
BS06980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12081940..12083162 | 210..1432 | 100 | <- | Minus |
arm_2R | 12083222..12083414 | 17..209 | 100 | | Minus |
BS06980.pep Sequence
Translation from 16 to 1431
> BS06980.pep
MNAAGGGSGAQAAAVAAGNNSLSHNALLSTASGATTMPMAQLADGWLELE
SDPGLFTLLLKDFGCHDVQVEEVYDLQKPIESPYGFIFLFRWIEERRARR
KIVETTAEIFVKDEEAISSIFFAQQVVPNSCATHALLSVLLNCNENNLQL
GDTLSRLKTHTKGMSPENKGLAIGNTPELACAHNSHAMPQARRRLERTGA
GVSSCRFTGEAFHFVSFVPINGQLFELDGLKPYPMNHGGWEDSEDWTDKF
RRVMAERLGIATGEQDIRFNLMAVVPDRRIAITHKLKMLRTNQAIVSGTL
QKLLKADEQGESGNGDSQRPDTPTTLLEPSAFTARDLQSLLKNLDTEIAI
NEQHLADENDRRHMFKVDASRRTHNYDKFICTFLSMLAHQGVLGELVSQH
LLPSKKVSGQGAANRISKQSTTASAGGSTAAGTASTPKTQQQQAAAAKNG
KSPSKTPGRRRKGRNKCRKRK*
BS06980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
calypso-PA | 471 | CG8445-PA | 1..471 | 1..471 | 2429 | 100 | Plus |
calypso-PB | 471 | CG8445-PB | 1..471 | 1..471 | 2429 | 100 | Plus |
Uch-L5-PB | 324 | CG3431-PB | 1..300 | 39..393 | 444 | 31.9 | Plus |
Uch-L5-PA | 324 | CG3431-PA | 1..300 | 39..393 | 444 | 31.9 | Plus |
Uch-L5R-PA | 340 | CG1950-PA | 15..314 | 36..393 | 433 | 30.9 | Plus |