Clone BS06991 Report

Search the DGRC for BS06991

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptRab7-RA
Protein status:BS06991.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06991.3prime Sequence

654 bp (653 high quality bases) assembled on 2005-12-04

> BS06991.3prime
ATGGTCTAGAAAGCTTTTAGCACTGACAGTTGTCAGGATTGCCAGGACGA
TTGTTTTGCGAGCCCAAGGTAATCTGATCGGGGAAATCGTTGATAACTTC
AGCCTCCGCCTCCAACTCTAACGCATTCTTGGCTATAACTTGAAACGCCA
TCTCCACGTTGATGCCCTCCTTGGCGGACGTTTCGTAGTAGGGTATATCG
TTCTTAGATTGGCACCATTGCTGCGCTCGACGCGTGGACACCTGGCGGTT
GTCCAAATCCACCTTATTGCCCAACACAACGAAGGGGAAGTGATCGGGAT
CCCGTGGACTGGCCTGTATGAGGAACTCGTCGCGCCAGGAGTCGAGATTC
TTGAACGAGTTGGGCGCCGTCACATCGTAGACAAGCACGCAGCAGTCGGC
TCCGCGGTAAAACGCCACTCCAAGCGACTGGAAGCGTTCCTGACCAGCAG
TGTCCCAGATCTGCATTGTGACCACTCGGTCGTTGACCACCACCTCTTTC
GTGCAGAAATCAGCTCCGATCGTGGCTTTGTATTGGTTGGAGAAGCGTTT
GTTTACATACTGATTCATCAGAGAGGTCTTGCCCACACTGCTGTCGCCCA
GAATGATGACTTTCAGTAGGGATTTCTTACGTCCGGACATGTCGACTGAT
AACT

BS06991.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5915-PA 624 Rab7-RA 1..624 640..17 3120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rab7-RC 1280 CG5915-RC 150..778 645..17 3130 99.8 Minus
Rab7-RB 1269 CG5915-RB 139..767 645..17 3130 99.8 Minus
Rab7-RA 1515 CG5915-RA 185..813 645..17 3130 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23994243..23994603 463..103 1805 100 Minus
3R 32079331 3R 23993997..23994181 645..461 910 99.5 Minus
3R 32079331 3R 23994662..23994750 105..17 445 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:30:53 has no hits.

BS06991.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:32 Download gff for BS06991.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab7-PA 1..624 17..640 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:37 Download gff for BS06991.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5915-PA 1..624 17..640 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:59 Download gff for BS06991.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab7-RA 183..813 17..648 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:16 Download gff for BS06991.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab7-RA 183..813 17..648 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:16 Download gff for BS06991.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23994246..23994602 104..460 100 -> Minus
3R 23994664..23994750 17..103 100   Minus
3R 23993995..23994181 461..648 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:59 Download gff for BS06991.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19819717..19819903 461..648 98 -> Minus
arm_3R 19819968..19820324 104..460 100 -> Minus
arm_3R 19820386..19820472 17..103 100   Minus

BS06991.5prime Sequence

508 bp (440 high quality bases) assembled on 2005-12-04

> BS06991.5prime
GAAGTTATCAGTCGACATGTCCGGACGTAAGAAATCCCTACTGAAAGTCA
TCATTCTGGGCGACAGCAGTGTGGGCAAGACCTCTCTGATGAATCAGTAT
GTAAACAAACGCTTCTCCAACCAATACAAAGCCACGATCGGAGCTGATTT
CTGCACGAAAGAGGTGGTGGTCAACGACCGAGTGGTCACAATGCAGATCT
GGGACACTGCTGGTCAGGAACGCTTCCAGTCGCTTGGAGTGGCGTTTTAC
CGCGGAGCCGACTGCTGCGTGCTTGTCTACGATGTGACGGCGCCCAACTC
GTTCAAGAATCTCGACTCCTGGCGCGACGAGTTCCTCATACAGGCCAGTC
CACGGGATCCCGATCACTTCCCCTTCGTTGTGTTGGGCAATAAGGTGGAT
TTGGACAACCGCCAGGTGTCCACGCGTCGAGCGCAGCAATGGTGCCCATC
TAAGAACGATATACCCTACTACGAAACGTCCGCCCAGGAGGGCATCAACG
TGGAGATG

BS06991.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5915-PA 624 Rab7-RA 1..492 17..508 2410 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rab7-RC 1280 CG5915-RC 150..646 12..508 2440 99.4 Plus
Rab7-RB 1269 CG5915-RB 139..635 12..508 2440 99.4 Plus
Rab7-RA 1515 CG5915-RA 185..681 12..508 2440 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23994243..23994557 194..508 1545 99.4 Plus
3R 32079331 3R 23993997..23994181 12..196 910 99.5 Plus
Blast to na_te.dros performed on 2015-02-13 08:28:11 has no hits.

BS06991.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:33 Download gff for BS06991.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab7-PA 1..492 17..508 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:39 Download gff for BS06991.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5915-PA 1..492 17..508 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:15:41 Download gff for BS06991.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab7-RA 183..681 9..508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:56 Download gff for BS06991.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab7-RA 183..681 9..508 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:56 Download gff for BS06991.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23993995..23994181 9..196 98 -> Plus
3R 23994246..23994557 197..508 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:15:41 Download gff for BS06991.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19819717..19819903 9..196 98 -> Plus
arm_3R 19819968..19820279 197..508 99   Plus

BS06991.complete Sequence

656 bp (656 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635684

> BS06991.complete
GAAGTTATCAGTCGACATGTCCGGACGTAAGAAATCCCTACTGAAAGTCA
TCATTCTGGGCGACAGCAGTGTGGGCAAGACCTCTCTGATGAATCAGTAT
GTAAACAAACGCTTCTCCAACCAATACAAAGCCACGATCGGAGCTGATTT
CTGCACGAAAGAGGTGGTGGTCAACGACCGAGTGGTCACAATGCAGATCT
GGGACACTGCTGGTCAGGAACGCTTCCAGTCGCTTGGAGTGGCGTTTTAC
CGCGGAGCCGACTGCTGCGTGCTTGTCTACGATGTGACGGCGCCCAACTC
GTTCAAGAATCTCGACTCCTGGCGCGACGAGTTCCTCATACAGGCCAGTC
CACGGGATCCCGATCACTTCCCCTTCGTTGTGTTGGGCAATAAGGTGGAT
TTGGACAACCGCCAGGTGTCCACGCGTCGAGCGCAGCAATGGTGCCAATC
TAAGAACGATATACCCTACTACGAAACGTCCGCCAAGGAGGGCATCAACG
TGGAGATGGCGTTTCAAGTTATAGCCAAGAATGCGTTAGAGTTGGAGGCG
GAGGCTGAAGTTATCAACGATTTCCCCGATCAGATTACCTTGGGCTCGCA
AAACAATCGTCCTGGCAATCCTGACAACTGTCAGTGCTAAAAGCTTTCTA
GACCAT

BS06991.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Rab7-RC 624 CG5915-PC 1..624 17..640 3120 100 Plus
Rab7-RB 624 CG5915-PB 1..624 17..640 3120 100 Plus
Rab7-RA 624 CG5915-PA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rab7-RC 1280 CG5915-RC 150..778 12..640 3130 99.8 Plus
Rab7-RB 1269 CG5915-RB 139..767 12..640 3130 99.8 Plus
Rab7-RA 1515 CG5915-RA 185..813 12..640 3130 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23994243..23994603 194..554 1805 100 Plus
3R 32079331 3R 23993997..23994181 12..196 910 99.5 Plus
3R 32079331 3R 23994662..23994750 552..640 445 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:15:21 has no hits.

BS06991.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:33 Download gff for BS06991.complete
Subject Subject Range Query Range Percent Splice Strand
Rab7-RA 1..624 17..640 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:11 Download gff for BS06991.complete
Subject Subject Range Query Range Percent Splice Strand
Rab7-RA 181..811 9..640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:16 Download gff for BS06991.complete
Subject Subject Range Query Range Percent Splice Strand
Rab7-RA 190..811 17..638 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:33 Download gff for BS06991.complete
Subject Subject Range Query Range Percent Splice Strand
Rab7-RA 181..811 9..640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:02 Download gff for BS06991.complete
Subject Subject Range Query Range Percent Splice Strand
Rab7-RA 190..811 17..638 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:02 Download gff for BS06991.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23994664..23994748 554..638 100   Plus
3R 23994002..23994181 17..196 100 -> Plus
3R 23994246..23994602 197..553 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:16 Download gff for BS06991.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19819724..19819903 17..196 100 -> Plus
arm_3R 19819968..19820324 197..553 100 -> Plus
arm_3R 19820386..19820470 554..638 100   Plus

BS06991.pep Sequence

Translation from 16 to 639

> BS06991.pep
MSGRKKSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEV
VVNDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLD
SWRDEFLIQASPRDPDHFPFVVLGNKVDLDNRQVSTRRAQQWCQSKNDIP
YYETSAKEGINVEMAFQVIAKNALELEAEAEVINDFPDQITLGSQNNRPG
NPDNCQC*

BS06991.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rab7-PC 207 CG5915-PC 1..207 1..207 1091 100 Plus
Rab7-PB 207 CG5915-PB 1..207 1..207 1091 100 Plus
Rab7-PA 207 CG5915-PA 1..207 1..207 1091 100 Plus
Rab9-PA 256 CG9994-PA 8..186 4..181 382 45 Plus
Rab5-PI 219 CG3664-PI 23..217 2..205 331 39 Plus