Clone Sequence Records
BS06991.3prime Sequence
654 bp (653 high quality bases) assembled on 2005-12-04
> BS06991.3prime
ATGGTCTAGAAAGCTTTTAGCACTGACAGTTGTCAGGATTGCCAGGACGA
TTGTTTTGCGAGCCCAAGGTAATCTGATCGGGGAAATCGTTGATAACTTC
AGCCTCCGCCTCCAACTCTAACGCATTCTTGGCTATAACTTGAAACGCCA
TCTCCACGTTGATGCCCTCCTTGGCGGACGTTTCGTAGTAGGGTATATCG
TTCTTAGATTGGCACCATTGCTGCGCTCGACGCGTGGACACCTGGCGGTT
GTCCAAATCCACCTTATTGCCCAACACAACGAAGGGGAAGTGATCGGGAT
CCCGTGGACTGGCCTGTATGAGGAACTCGTCGCGCCAGGAGTCGAGATTC
TTGAACGAGTTGGGCGCCGTCACATCGTAGACAAGCACGCAGCAGTCGGC
TCCGCGGTAAAACGCCACTCCAAGCGACTGGAAGCGTTCCTGACCAGCAG
TGTCCCAGATCTGCATTGTGACCACTCGGTCGTTGACCACCACCTCTTTC
GTGCAGAAATCAGCTCCGATCGTGGCTTTGTATTGGTTGGAGAAGCGTTT
GTTTACATACTGATTCATCAGAGAGGTCTTGCCCACACTGCTGTCGCCCA
GAATGATGACTTTCAGTAGGGATTTCTTACGTCCGGACATGTCGACTGAT
AACT
BS06991.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5915-PA | 624 | Rab7-RA | 1..624 | 640..17 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab7-RC | 1280 | CG5915-RC | 150..778 | 645..17 | 3130 | 99.8 | Minus |
Rab7-RB | 1269 | CG5915-RB | 139..767 | 645..17 | 3130 | 99.8 | Minus |
Rab7-RA | 1515 | CG5915-RA | 185..813 | 645..17 | 3130 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23994243..23994603 | 463..103 | 1805 | 100 | Minus |
3R | 32079331 | 3R | 23993997..23994181 | 645..461 | 910 | 99.5 | Minus |
3R | 32079331 | 3R | 23994662..23994750 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:30:53 has no hits.
BS06991.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:32 Download gff for
BS06991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-PA | 1..624 | 17..640 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:37 Download gff for
BS06991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5915-PA | 1..624 | 17..640 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:59 Download gff for
BS06991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 183..813 | 17..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:16 Download gff for
BS06991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 183..813 | 17..648 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:16 Download gff for
BS06991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23994246..23994602 | 104..460 | 100 | -> | Minus |
3R | 23994664..23994750 | 17..103 | 100 | | Minus |
3R | 23993995..23994181 | 461..648 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:59 Download gff for
BS06991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19819717..19819903 | 461..648 | 98 | -> | Minus |
arm_3R | 19819968..19820324 | 104..460 | 100 | -> | Minus |
arm_3R | 19820386..19820472 | 17..103 | 100 | | Minus |
BS06991.5prime Sequence
508 bp (440 high quality bases) assembled on 2005-12-04
> BS06991.5prime
GAAGTTATCAGTCGACATGTCCGGACGTAAGAAATCCCTACTGAAAGTCA
TCATTCTGGGCGACAGCAGTGTGGGCAAGACCTCTCTGATGAATCAGTAT
GTAAACAAACGCTTCTCCAACCAATACAAAGCCACGATCGGAGCTGATTT
CTGCACGAAAGAGGTGGTGGTCAACGACCGAGTGGTCACAATGCAGATCT
GGGACACTGCTGGTCAGGAACGCTTCCAGTCGCTTGGAGTGGCGTTTTAC
CGCGGAGCCGACTGCTGCGTGCTTGTCTACGATGTGACGGCGCCCAACTC
GTTCAAGAATCTCGACTCCTGGCGCGACGAGTTCCTCATACAGGCCAGTC
CACGGGATCCCGATCACTTCCCCTTCGTTGTGTTGGGCAATAAGGTGGAT
TTGGACAACCGCCAGGTGTCCACGCGTCGAGCGCAGCAATGGTGCCCATC
TAAGAACGATATACCCTACTACGAAACGTCCGCCCAGGAGGGCATCAACG
TGGAGATG
BS06991.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5915-PA | 624 | Rab7-RA | 1..492 | 17..508 | 2410 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab7-RC | 1280 | CG5915-RC | 150..646 | 12..508 | 2440 | 99.4 | Plus |
Rab7-RB | 1269 | CG5915-RB | 139..635 | 12..508 | 2440 | 99.4 | Plus |
Rab7-RA | 1515 | CG5915-RA | 185..681 | 12..508 | 2440 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23994243..23994557 | 194..508 | 1545 | 99.4 | Plus |
3R | 32079331 | 3R | 23993997..23994181 | 12..196 | 910 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:28:11 has no hits.
BS06991.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:33 Download gff for
BS06991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-PA | 1..492 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:39 Download gff for
BS06991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5915-PA | 1..492 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:15:41 Download gff for
BS06991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 183..681 | 9..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:56 Download gff for
BS06991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 183..681 | 9..508 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:56 Download gff for
BS06991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23993995..23994181 | 9..196 | 98 | -> | Plus |
3R | 23994246..23994557 | 197..508 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:15:41 Download gff for
BS06991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19819717..19819903 | 9..196 | 98 | -> | Plus |
arm_3R | 19819968..19820279 | 197..508 | 99 | | Plus |
BS06991.complete Sequence
656 bp (656 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635684
> BS06991.complete
GAAGTTATCAGTCGACATGTCCGGACGTAAGAAATCCCTACTGAAAGTCA
TCATTCTGGGCGACAGCAGTGTGGGCAAGACCTCTCTGATGAATCAGTAT
GTAAACAAACGCTTCTCCAACCAATACAAAGCCACGATCGGAGCTGATTT
CTGCACGAAAGAGGTGGTGGTCAACGACCGAGTGGTCACAATGCAGATCT
GGGACACTGCTGGTCAGGAACGCTTCCAGTCGCTTGGAGTGGCGTTTTAC
CGCGGAGCCGACTGCTGCGTGCTTGTCTACGATGTGACGGCGCCCAACTC
GTTCAAGAATCTCGACTCCTGGCGCGACGAGTTCCTCATACAGGCCAGTC
CACGGGATCCCGATCACTTCCCCTTCGTTGTGTTGGGCAATAAGGTGGAT
TTGGACAACCGCCAGGTGTCCACGCGTCGAGCGCAGCAATGGTGCCAATC
TAAGAACGATATACCCTACTACGAAACGTCCGCCAAGGAGGGCATCAACG
TGGAGATGGCGTTTCAAGTTATAGCCAAGAATGCGTTAGAGTTGGAGGCG
GAGGCTGAAGTTATCAACGATTTCCCCGATCAGATTACCTTGGGCTCGCA
AAACAATCGTCCTGGCAATCCTGACAACTGTCAGTGCTAAAAGCTTTCTA
GACCAT
BS06991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab7-RC | 624 | CG5915-PC | 1..624 | 17..640 | 3120 | 100 | Plus |
Rab7-RB | 624 | CG5915-PB | 1..624 | 17..640 | 3120 | 100 | Plus |
Rab7-RA | 624 | CG5915-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab7-RC | 1280 | CG5915-RC | 150..778 | 12..640 | 3130 | 99.8 | Plus |
Rab7-RB | 1269 | CG5915-RB | 139..767 | 12..640 | 3130 | 99.8 | Plus |
Rab7-RA | 1515 | CG5915-RA | 185..813 | 12..640 | 3130 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23994243..23994603 | 194..554 | 1805 | 100 | Plus |
3R | 32079331 | 3R | 23993997..23994181 | 12..196 | 910 | 99.5 | Plus |
3R | 32079331 | 3R | 23994662..23994750 | 552..640 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:15:21 has no hits.
BS06991.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:33 Download gff for
BS06991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:11 Download gff for
BS06991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 181..811 | 9..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:16 Download gff for
BS06991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 190..811 | 17..638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:33 Download gff for
BS06991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 181..811 | 9..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:02 Download gff for
BS06991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 190..811 | 17..638 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:02 Download gff for
BS06991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23994664..23994748 | 554..638 | 100 | | Plus |
3R | 23994002..23994181 | 17..196 | 100 | -> | Plus |
3R | 23994246..23994602 | 197..553 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:16 Download gff for
BS06991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19819724..19819903 | 17..196 | 100 | -> | Plus |
arm_3R | 19819968..19820324 | 197..553 | 100 | -> | Plus |
arm_3R | 19820386..19820470 | 554..638 | 100 | | Plus |
BS06991.pep Sequence
Translation from 16 to 639
> BS06991.pep
MSGRKKSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEV
VVNDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLD
SWRDEFLIQASPRDPDHFPFVVLGNKVDLDNRQVSTRRAQQWCQSKNDIP
YYETSAKEGINVEMAFQVIAKNALELEAEAEVINDFPDQITLGSQNNRPG
NPDNCQC*
BS06991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab7-PC | 207 | CG5915-PC | 1..207 | 1..207 | 1091 | 100 | Plus |
Rab7-PB | 207 | CG5915-PB | 1..207 | 1..207 | 1091 | 100 | Plus |
Rab7-PA | 207 | CG5915-PA | 1..207 | 1..207 | 1091 | 100 | Plus |
Rab9-PA | 256 | CG9994-PA | 8..186 | 4..181 | 382 | 45 | Plus |
Rab5-PI | 219 | CG3664-PI | 23..217 | 2..205 | 331 | 39 | Plus |