Clone BS06992 Report

Search the DGRC for BS06992

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:69
Well:92
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Man-II-RA
Protein status:BS06992.pep: full length peptide match
Sequenced Size:3359

Clone Sequence Records

BS06992.complete Sequence

3359 bp assembled on 2010-07-15

GenBank Submission: KX803412

> BS06992.complete
GAAGTTATCAGTCGACATGTTGCGAATACGTCGGCGGTTCGCTTTGGTAA
TTTGCTCCGGCTGCCTGCTGGTTTTCCTCAGCCTGTACATAATCCTCAAT
TTTGCGGCGCCGGCAGCCACCCAGATAAAGCCCAACTATGAGAACATTGA
GAACAAGCTGCATGAGCTGGAAAATGGTTTGCAGGAGCACGGGGAGGAGA
TGCGGAATCTCAGGGCGCGTCTTGCCGAAACATCCAATCGCGACGATCCA
ATAAGACCTCCACTTAAAGTGGCTCGTTCCCCGAGGCCAGGGCAATGCCA
AGATGTGGTCCAAGACGTGCCCAATGTGGATGTACAGATGCTGGAGCTAT
ACGATCGCATGTCCTTCAAGGACATAGATGGAGGCGTGTGGAAACAGGGC
TGGAACATTAAGTACGATCCACTGAAGTACAACGCCCATCACAAACTAAA
AGTCTTCGTTGTGCCGCACTCGCACAACGATCCTGGATGGATTCAGACGT
TTGAGGAATACTACCAGCACGACACCAAGCACATCCTGTCCAATGCACTA
CGGCATCTGCACGACAATCCCGAGATGAAGTTCATCTGGGCGGAAATCTC
CTACTTTGCTCGGTTCTATCACGATTTGGGAGAGAACAAAAAGCTGCAGA
TGAAGTCCATTGTAAAGAATGGACAGTTGGAATTTGTGACTGGAGGATGG
GTAATGCCGGACGAGGCCAACTCCCACTGGCGAAACGTACTGCTGCAGCT
GACCGAAGGGCAAACATGGTTGAAGCAATTCATGAATGTCACACCCACTG
CTTCCTGGGCCATCGATCCCTTCGGACACAGTCCCACTATGCCGTACATT
TTGCAGAAGAGTGGTTTCAAGAATATGCTTATCCAAAGGACGCACTATTC
GGTTAAGAAGGAACTGGCCCAACAGCGACAGCTTGAGTTCCTGTGGCGCC
AGATCTGGGACAACAAAGGGGACACAGCTCTCTTCACCCACATGATGCCC
TTCTACTCGTACGACATTCCTCACACCTGTGGTCCAGATCCCAAGGTTTG
CTGTCAGTTCGATTTCAAACGAATGGGCTCCTTCGGTTTGAGCTGTCCAT
GGAAGGTGCCGCCGCGTACAATCAGTGATCAAAATGTGGCAGCACGCTCA
GATCTGCTGGTTGATCAGTGGAAGAAGAAGGCCGAGCTGTATCGCACGAA
CGTGCTGCTGATTCCGTTGGGTGACGACTTCCGCTTCAAGCAGAACACCG
AGTGGGATGTGCAGCGCGTGAACTACGAAAGGCTGTTCGAACACATCAAC
AGCCAGGCCCACTTCAATGTCCAGGCGCAGTTCGGCACACTGCAGGAATA
CTTTGATGCAGTGCACCAGGCGGAAAGGGCGGGACAAGCCGAGTTTCCCA
CGCTAAGCGGTGACTTTTTCACATACGCCGATCGATCGGATAACTATTGG
AGTGGCTACTACACATCCCGCCCGTATCATAAGCGCATGGACCGCGTCCT
GATGCACTATGTACGTGCAGCAGAAATGCTTTCCGCCTGGCACTCCTGGG
ACGGTATGGCCCGCATCGAGGAACGTCTGGAGCAGGCCCGCAGGGAGCTG
TCATTGTTCCAGCACCACGACGGTATAACTGGCACAGCAAAAACGCACGT
AGTCGTCGACTACGAGCAACGCATGCAGGAAGCTTTAAAAGCCTGTCAAA
TGGTAATGCAACAGTCGGTCTACCGATTGCTGACAAAGCCCTCCATCTAC
AGTCCGGACTTCAGTTTCTCGTACTTTACGCTCGACGACTCCCGCTGGCC
AGGATCTGGTGTGGAGGACAGTCGAACCACCATAATACTGGGCGAGGATA
TACTGCCCTCCAAGCATGTGGTGATGCACAACACCCTGCCCCACTGGCGG
GAGCAGCTGGTGGACTTTTATGTATCCAGTCCGTTTGTAAGCGTTACCGA
CTTGGCAAACAATCCGGTGGAGGCTCAGGTGTCCCCGGTGTGGAGCTGGC
ACCACGACACACTCACAAAGACTATCCACCCACAAGGCTCCACCACCAAG
TACCGCATCATCTTCAAGGCTCGGGTGCCGCCCATGGGCTTGGCCACCTA
CGTTTTAACCATCTCCGATTCCAAGCCAGAGCACACCTCGTATGCATCGA
ATCTCTTGCTCCGTAAAAACCCGACTTCGTTACCATTGGGCCAATATCCG
GAGGATGTGAAGTTTGGCGATCCTCGAGAGATCTCATTGCGGGTTGGTAA
CGGACCCACCTTGGCCTTTTCGGAGCAGGGTCTCCTTAAGTCCATTCAGC
TTACTCAGGATAGCCCACATGTACCGGTGCACTTCAAGTTCCTCAAGTAT
GGCGTTCGATCGCATGGCGATAGATCCGGTGCCTATCTGTTCCTGCCCAA
TGGACCAGCTTCGCCAGTCGAGCTTGGCCAGCCAGTGGTCCTGGTGACTA
AGGGCAAACTGGAGTCGTCCGTGAGCGTGGGACTTCCGAGCGTGGTGCAC
CAGACGATAATGCGCGGTGGTGCACCTGAGATTCGCAATCTGGTGGATAT
AGGCTCACTGGACAACACGGAGATCGTGATGCGCTTGGAGACGCATATCG
ACAGCGGCGATATCTTCTACACGGATCTCAATGGATTGCAATTTATCAAG
AGGCGGCGTTTGGACAAATTACCTTTGCAGGCCAACTATTATCCCATACC
TTCTGGTATGTTCATTGAGGATGCCAATACGCGACTCACTCTCCTCACGG
GTCAACCGCTGGGTGGATCTTCTCTGGCCTCGGGCGAGCTAGAGATTATG
CAAGATCGTCGCCTGGCCAGCGATGATGAACGCGGCCTGGGACAGGGTGT
TTTGGACAACAAGCCGGTGCTGCATATTTATCGGCTGGTGCTGGAGAAGG
TTAACAACTGTGTCCGACCGTCAGAGCTTCATCCTGCCGGCTATTTGACA
AGTGCCGCTCACAAAGCATCGCAGTCACTGCTGGATCCACTGGACAAGTT
TATATTCGCTGAAAATGAGTGGATCGGGGCACAGGGGCAATTTGGTGGCG
ATCATCCTTCGGCTCGTGAGGATCTCGATGTGTCGGTGATGAGACGCTTA
ACCAAGAGCTCGGCCAAAACCCAGCGAGTAGGCTACGTTCTGCACCGCAC
CAATCTGATGCAATGCGGCACTCCAGAGGAGCATACACAGAAGCTGGATG
TGTGCCACCTACTGCCGAATGTGGCGAGATGCGAGCGCACGACGCTGACT
TTCCTGCAGAATTTGGAGCACTTGGATGGCATGGTGGCGCCGGAAGTGTG
CCCCATGGAAACCGCCGCTTATGTGAGCAGTCACTCAAGCTGAAAGCTTT
CTAGACCAT

BS06992.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-II-RA 3327 CG18802-PA 1..3327 17..3343 16635 100 Plus
alpha-Man-II-RB 3330 CG18802-PB 1..3330 17..3343 16570 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-II-RA 3999 CG18802-RA 147..3473 17..3343 16635 100 Plus
alpha-Man-II-RB 4002 CG18802-RB 147..3476 17..3343 16570 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9413723..9415196 658..2131 7370 100 Plus
3R 32079331 3R 9415430..9416492 2131..3193 5315 100 Plus
3R 32079331 3R 9412862..9413390 129..657 2645 100 Plus
3R 32079331 3R 9416587..9416738 3192..3343 760 100 Plus
3R 32079331 3R 9412694..9412807 17..130 570 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:46:19 has no hits.

BS06992.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:33 Download gff for BS06992.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-II-RA 151..3471 22..3342 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:20 Download gff for BS06992.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-II-RA 152..3472 22..3342 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:36 Download gff for BS06992.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-II-RA 152..3472 22..3342 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:36 Download gff for BS06992.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9416589..9416737 3194..3342 100   Plus
3R 9412699..9412807 22..130 100 -> Plus
3R 9412864..9413390 131..657 100 -> Plus
3R 9413723..9415195 658..2130 100 -> Plus
3R 9415430..9416492 2131..3193 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:20 Download gff for BS06992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5238421..5238529 22..130 100 -> Plus
arm_3R 5238586..5239112 131..657 100 -> Plus
arm_3R 5239445..5240917 658..2130 100 -> Plus
arm_3R 5241152..5242214 2131..3193 100 -> Plus
arm_3R 5242311..5242459 3194..3342 100   Plus

BS06992.3prime Sequence

295 bp (202 high quality bases) assembled on 2005-12-04

> BS06992.3prime
ATGGTCTAGAAAGCTTTCAGCTTGAGTGACTGCTCACATAAGCGGCGGTT
TCCATGGGGCACACTTCCGGCGCCACCATGCCATCCAAGTGCTCCAAATT
CTGCAGGAAAGTCAGCGTCGTGCGCTCGCATCTCGCCACATTCGGCAGTA
GGTGGCACACATCCAGCTTCTGTGTATGCTCCTCTGGAGTGCCGCATTGC
ATCAGATTGGTGCGGTGCAGAACGTAGCCTACTCGCTGGGTTTTGGCCGA
GCTCTTGGTTAAGCGTCTCATCACCGACACATCGAGATCCTCACG

BS06992.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18802-PA 3327 alpha-Man-II-RA 3049..3327 295..17 1395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-II-RB 4002 CG18802-RB 3198..3476 295..17 1395 100 Minus
alpha-Man-II-RA 3999 CG18802-RA 3195..3473 295..17 1395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9416587..9416738 168..17 760 100 Minus
3R 32079331 3R 9416364..9416492 295..167 645 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:30:41 has no hits.

BS06992.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:34 Download gff for BS06992.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18802-PA 3049..3327 17..295 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:40 Download gff for BS06992.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18802-PA 3049..3327 17..295 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:56 Download gff for BS06992.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-II-RA 3195..3477 13..295 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:01 Download gff for BS06992.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-II-RA 3195..3477 13..295 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:01 Download gff for BS06992.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9416364..9416492 167..295 100 -> Minus
3R 9416589..9416742 13..166 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:56 Download gff for BS06992.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5242311..5242464 13..166 98   Minus
arm_3R 5242086..5242214 167..295 100 -> Minus

BS06992.pep Sequence

Translation from 16 to 3342

> BS06992.pep
MLRIRRRFALVICSGCLLVFLSLYIILNFAAPAATQIKPNYENIENKLHE
LENGLQEHGEEMRNLRARLAETSNRDDPIRPPLKVARSPRPGQCQDVVQD
VPNVDVQMLELYDRMSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVP
HSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARF
YHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQT
WLKQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKEL
AQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDF
KRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIP
LGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVH
QAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVR
AAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYE
QRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVE
DSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNP
VEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTIS
DSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLA
FSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASP
VELGQPVVLVTKGKLESSVSVGLPSVVHQTIMRGGAPEIRNLVDIGSLDN
TEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFI
EDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKP
VLHIYRLVLEKVNNCVRPSELHPAGYLTSAAHKASQSLLDPLDKFIFAEN
EWIGAQGQFGGDHPSAREDLDVSVMRRLTKSSAKTQRVGYVLHRTNLMQC
GTPEEHTQKLDVCHLLPNVARCERTTLTFLQNLEHLDGMVAPEVCPMETA
AYVSSHSS*

BS06992.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-II-PA 1108 CG18802-PA 1..1108 1..1108 5917 100 Plus
alpha-Man-II-PB 1109 CG18802-PB 1..1109 1..1108 5905 99.9 Plus
alpha-Man-IIb-PC 1249 CG4606-PC 115..1075 93..960 1168 31.4 Plus
alpha-Man-IIb-PB 1249 CG4606-PB 115..1075 93..960 1168 31.4 Plus
alpha-Man-IIb-PA 1249 CG4606-PA 115..1075 93..960 1168 31.4 Plus