Clone Sequence Records
BS06992.complete Sequence
3359 bp assembled on 2010-07-15
GenBank Submission: KX803412
> BS06992.complete
GAAGTTATCAGTCGACATGTTGCGAATACGTCGGCGGTTCGCTTTGGTAA
TTTGCTCCGGCTGCCTGCTGGTTTTCCTCAGCCTGTACATAATCCTCAAT
TTTGCGGCGCCGGCAGCCACCCAGATAAAGCCCAACTATGAGAACATTGA
GAACAAGCTGCATGAGCTGGAAAATGGTTTGCAGGAGCACGGGGAGGAGA
TGCGGAATCTCAGGGCGCGTCTTGCCGAAACATCCAATCGCGACGATCCA
ATAAGACCTCCACTTAAAGTGGCTCGTTCCCCGAGGCCAGGGCAATGCCA
AGATGTGGTCCAAGACGTGCCCAATGTGGATGTACAGATGCTGGAGCTAT
ACGATCGCATGTCCTTCAAGGACATAGATGGAGGCGTGTGGAAACAGGGC
TGGAACATTAAGTACGATCCACTGAAGTACAACGCCCATCACAAACTAAA
AGTCTTCGTTGTGCCGCACTCGCACAACGATCCTGGATGGATTCAGACGT
TTGAGGAATACTACCAGCACGACACCAAGCACATCCTGTCCAATGCACTA
CGGCATCTGCACGACAATCCCGAGATGAAGTTCATCTGGGCGGAAATCTC
CTACTTTGCTCGGTTCTATCACGATTTGGGAGAGAACAAAAAGCTGCAGA
TGAAGTCCATTGTAAAGAATGGACAGTTGGAATTTGTGACTGGAGGATGG
GTAATGCCGGACGAGGCCAACTCCCACTGGCGAAACGTACTGCTGCAGCT
GACCGAAGGGCAAACATGGTTGAAGCAATTCATGAATGTCACACCCACTG
CTTCCTGGGCCATCGATCCCTTCGGACACAGTCCCACTATGCCGTACATT
TTGCAGAAGAGTGGTTTCAAGAATATGCTTATCCAAAGGACGCACTATTC
GGTTAAGAAGGAACTGGCCCAACAGCGACAGCTTGAGTTCCTGTGGCGCC
AGATCTGGGACAACAAAGGGGACACAGCTCTCTTCACCCACATGATGCCC
TTCTACTCGTACGACATTCCTCACACCTGTGGTCCAGATCCCAAGGTTTG
CTGTCAGTTCGATTTCAAACGAATGGGCTCCTTCGGTTTGAGCTGTCCAT
GGAAGGTGCCGCCGCGTACAATCAGTGATCAAAATGTGGCAGCACGCTCA
GATCTGCTGGTTGATCAGTGGAAGAAGAAGGCCGAGCTGTATCGCACGAA
CGTGCTGCTGATTCCGTTGGGTGACGACTTCCGCTTCAAGCAGAACACCG
AGTGGGATGTGCAGCGCGTGAACTACGAAAGGCTGTTCGAACACATCAAC
AGCCAGGCCCACTTCAATGTCCAGGCGCAGTTCGGCACACTGCAGGAATA
CTTTGATGCAGTGCACCAGGCGGAAAGGGCGGGACAAGCCGAGTTTCCCA
CGCTAAGCGGTGACTTTTTCACATACGCCGATCGATCGGATAACTATTGG
AGTGGCTACTACACATCCCGCCCGTATCATAAGCGCATGGACCGCGTCCT
GATGCACTATGTACGTGCAGCAGAAATGCTTTCCGCCTGGCACTCCTGGG
ACGGTATGGCCCGCATCGAGGAACGTCTGGAGCAGGCCCGCAGGGAGCTG
TCATTGTTCCAGCACCACGACGGTATAACTGGCACAGCAAAAACGCACGT
AGTCGTCGACTACGAGCAACGCATGCAGGAAGCTTTAAAAGCCTGTCAAA
TGGTAATGCAACAGTCGGTCTACCGATTGCTGACAAAGCCCTCCATCTAC
AGTCCGGACTTCAGTTTCTCGTACTTTACGCTCGACGACTCCCGCTGGCC
AGGATCTGGTGTGGAGGACAGTCGAACCACCATAATACTGGGCGAGGATA
TACTGCCCTCCAAGCATGTGGTGATGCACAACACCCTGCCCCACTGGCGG
GAGCAGCTGGTGGACTTTTATGTATCCAGTCCGTTTGTAAGCGTTACCGA
CTTGGCAAACAATCCGGTGGAGGCTCAGGTGTCCCCGGTGTGGAGCTGGC
ACCACGACACACTCACAAAGACTATCCACCCACAAGGCTCCACCACCAAG
TACCGCATCATCTTCAAGGCTCGGGTGCCGCCCATGGGCTTGGCCACCTA
CGTTTTAACCATCTCCGATTCCAAGCCAGAGCACACCTCGTATGCATCGA
ATCTCTTGCTCCGTAAAAACCCGACTTCGTTACCATTGGGCCAATATCCG
GAGGATGTGAAGTTTGGCGATCCTCGAGAGATCTCATTGCGGGTTGGTAA
CGGACCCACCTTGGCCTTTTCGGAGCAGGGTCTCCTTAAGTCCATTCAGC
TTACTCAGGATAGCCCACATGTACCGGTGCACTTCAAGTTCCTCAAGTAT
GGCGTTCGATCGCATGGCGATAGATCCGGTGCCTATCTGTTCCTGCCCAA
TGGACCAGCTTCGCCAGTCGAGCTTGGCCAGCCAGTGGTCCTGGTGACTA
AGGGCAAACTGGAGTCGTCCGTGAGCGTGGGACTTCCGAGCGTGGTGCAC
CAGACGATAATGCGCGGTGGTGCACCTGAGATTCGCAATCTGGTGGATAT
AGGCTCACTGGACAACACGGAGATCGTGATGCGCTTGGAGACGCATATCG
ACAGCGGCGATATCTTCTACACGGATCTCAATGGATTGCAATTTATCAAG
AGGCGGCGTTTGGACAAATTACCTTTGCAGGCCAACTATTATCCCATACC
TTCTGGTATGTTCATTGAGGATGCCAATACGCGACTCACTCTCCTCACGG
GTCAACCGCTGGGTGGATCTTCTCTGGCCTCGGGCGAGCTAGAGATTATG
CAAGATCGTCGCCTGGCCAGCGATGATGAACGCGGCCTGGGACAGGGTGT
TTTGGACAACAAGCCGGTGCTGCATATTTATCGGCTGGTGCTGGAGAAGG
TTAACAACTGTGTCCGACCGTCAGAGCTTCATCCTGCCGGCTATTTGACA
AGTGCCGCTCACAAAGCATCGCAGTCACTGCTGGATCCACTGGACAAGTT
TATATTCGCTGAAAATGAGTGGATCGGGGCACAGGGGCAATTTGGTGGCG
ATCATCCTTCGGCTCGTGAGGATCTCGATGTGTCGGTGATGAGACGCTTA
ACCAAGAGCTCGGCCAAAACCCAGCGAGTAGGCTACGTTCTGCACCGCAC
CAATCTGATGCAATGCGGCACTCCAGAGGAGCATACACAGAAGCTGGATG
TGTGCCACCTACTGCCGAATGTGGCGAGATGCGAGCGCACGACGCTGACT
TTCCTGCAGAATTTGGAGCACTTGGATGGCATGGTGGCGCCGGAAGTGTG
CCCCATGGAAACCGCCGCTTATGTGAGCAGTCACTCAAGCTGAAAGCTTT
CTAGACCAT
BS06992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Man-II-RA | 3327 | CG18802-PA | 1..3327 | 17..3343 | 16635 | 100 | Plus |
alpha-Man-II-RB | 3330 | CG18802-PB | 1..3330 | 17..3343 | 16570 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Man-II-RA | 3999 | CG18802-RA | 147..3473 | 17..3343 | 16635 | 100 | Plus |
alpha-Man-II-RB | 4002 | CG18802-RB | 147..3476 | 17..3343 | 16570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9413723..9415196 | 658..2131 | 7370 | 100 | Plus |
3R | 32079331 | 3R | 9415430..9416492 | 2131..3193 | 5315 | 100 | Plus |
3R | 32079331 | 3R | 9412862..9413390 | 129..657 | 2645 | 100 | Plus |
3R | 32079331 | 3R | 9416587..9416738 | 3192..3343 | 760 | 100 | Plus |
3R | 32079331 | 3R | 9412694..9412807 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:46:19 has no hits.
BS06992.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:33 Download gff for
BS06992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-II-RA | 151..3471 | 22..3342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:20 Download gff for
BS06992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-II-RA | 152..3472 | 22..3342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:36 Download gff for
BS06992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-II-RA | 152..3472 | 22..3342 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:36 Download gff for
BS06992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9416589..9416737 | 3194..3342 | 100 | | Plus |
3R | 9412699..9412807 | 22..130 | 100 | -> | Plus |
3R | 9412864..9413390 | 131..657 | 100 | -> | Plus |
3R | 9413723..9415195 | 658..2130 | 100 | -> | Plus |
3R | 9415430..9416492 | 2131..3193 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:20 Download gff for
BS06992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5238421..5238529 | 22..130 | 100 | -> | Plus |
arm_3R | 5238586..5239112 | 131..657 | 100 | -> | Plus |
arm_3R | 5239445..5240917 | 658..2130 | 100 | -> | Plus |
arm_3R | 5241152..5242214 | 2131..3193 | 100 | -> | Plus |
arm_3R | 5242311..5242459 | 3194..3342 | 100 | | Plus |
BS06992.3prime Sequence
295 bp (202 high quality bases) assembled on 2005-12-04
> BS06992.3prime
ATGGTCTAGAAAGCTTTCAGCTTGAGTGACTGCTCACATAAGCGGCGGTT
TCCATGGGGCACACTTCCGGCGCCACCATGCCATCCAAGTGCTCCAAATT
CTGCAGGAAAGTCAGCGTCGTGCGCTCGCATCTCGCCACATTCGGCAGTA
GGTGGCACACATCCAGCTTCTGTGTATGCTCCTCTGGAGTGCCGCATTGC
ATCAGATTGGTGCGGTGCAGAACGTAGCCTACTCGCTGGGTTTTGGCCGA
GCTCTTGGTTAAGCGTCTCATCACCGACACATCGAGATCCTCACG
BS06992.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18802-PA | 3327 | alpha-Man-II-RA | 3049..3327 | 295..17 | 1395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Man-II-RB | 4002 | CG18802-RB | 3198..3476 | 295..17 | 1395 | 100 | Minus |
alpha-Man-II-RA | 3999 | CG18802-RA | 3195..3473 | 295..17 | 1395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9416587..9416738 | 168..17 | 760 | 100 | Minus |
3R | 32079331 | 3R | 9416364..9416492 | 295..167 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:30:41 has no hits.
BS06992.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:34 Download gff for
BS06992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18802-PA | 3049..3327 | 17..295 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:40 Download gff for
BS06992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18802-PA | 3049..3327 | 17..295 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:56 Download gff for
BS06992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-II-RA | 3195..3477 | 13..295 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:01 Download gff for
BS06992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-II-RA | 3195..3477 | 13..295 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:01 Download gff for
BS06992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9416364..9416492 | 167..295 | 100 | -> | Minus |
3R | 9416589..9416742 | 13..166 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:56 Download gff for
BS06992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5242311..5242464 | 13..166 | 98 | | Minus |
arm_3R | 5242086..5242214 | 167..295 | 100 | -> | Minus |
BS06992.pep Sequence
Translation from 16 to 3342
> BS06992.pep
MLRIRRRFALVICSGCLLVFLSLYIILNFAAPAATQIKPNYENIENKLHE
LENGLQEHGEEMRNLRARLAETSNRDDPIRPPLKVARSPRPGQCQDVVQD
VPNVDVQMLELYDRMSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVP
HSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARF
YHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQT
WLKQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKEL
AQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDF
KRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIP
LGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVH
QAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVR
AAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYE
QRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVE
DSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNP
VEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTIS
DSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLA
FSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASP
VELGQPVVLVTKGKLESSVSVGLPSVVHQTIMRGGAPEIRNLVDIGSLDN
TEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFI
EDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKP
VLHIYRLVLEKVNNCVRPSELHPAGYLTSAAHKASQSLLDPLDKFIFAEN
EWIGAQGQFGGDHPSAREDLDVSVMRRLTKSSAKTQRVGYVLHRTNLMQC
GTPEEHTQKLDVCHLLPNVARCERTTLTFLQNLEHLDGMVAPEVCPMETA
AYVSSHSS*
BS06992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Man-II-PA | 1108 | CG18802-PA | 1..1108 | 1..1108 | 5917 | 100 | Plus |
alpha-Man-II-PB | 1109 | CG18802-PB | 1..1109 | 1..1108 | 5905 | 99.9 | Plus |
alpha-Man-IIb-PC | 1249 | CG4606-PC | 115..1075 | 93..960 | 1168 | 31.4 | Plus |
alpha-Man-IIb-PB | 1249 | CG4606-PB | 115..1075 | 93..960 | 1168 | 31.4 | Plus |
alpha-Man-IIb-PA | 1249 | CG4606-PA | 115..1075 | 93..960 | 1168 | 31.4 | Plus |