Clone Sequence Records
BS06996.3prime Sequence
823 bp (806 high quality bases) assembled on 2005-12-04
> BS06996.3prime
ATGGTCTAGAAAGCTTTCAGTCATCCAGCGAACTAACGCGCAATCCCTCG
CCGCCGGCAGTCGTAACATGAACACCAAAACCCGCCGATTCGAGCTCCTC
TTTAAGCTTCCAGTAGACCTCGTTGCACTCGTAGTTCTCTGGAAGCAGAA
CGATGACATAGCCACCTGCGCCGGCGCCCGTCAGCTTTGAAAAGAAGCCA
CGCTTAAAAGCGATGGTGAAGATTTGCTCCAGTTTCGGGTGCGACACTCC
GATAGCCTTCAACAGATCATTGTTGATCTGGAACAGGCGTTCAAGTTGCT
CGAATTTCGAGCTATCGTCTTGGGCGTTGCCAAAGCTTTCGTAGAGTGGA
ACGGCGGCGGCAACAAGCTCCTCGCAAGCCTGCCAAATGGCCTCGATGAG
CTGCGGAAAGGCATCTCCCAGATGACGAACCTTGGCCACAATGTCGGCGG
TGCTGCGACTCACACGACTGTCCACCAGCAGGATGTTTAGTGGTTTCTGG
ATCTTCAGCGACTGGAAGCCCTGGCCCTTGACATACCGCAACATTCCGCC
GTAGGTGCATACAGTGTTGTCCAGACCCGAGGGCGTGCCATGATTAACAC
GCTCCGATTCATAAGCCCAGGACGAGATCAACGCCTGGTTTGCCTCCGAC
AAGTAGCTGTCTCTATCAAAGTGTCCGGCCAAAATGAGAAATGTCGTGGC
CAAAGCTGCTCCGAAAGAGGCGGAACTGCCCAAACCCGCACCCACGGTTA
GCTGGCTGTCTACCTGCACCTGGAAACCGGTTTGCAGCGTCAGTTTCTTG
TCGCCGGGTGCGGAGAGTACAGC
BS06996.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33671-PA | 1173 | CG33671-RA | 367..1173 | 823..17 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33672-RA | 1976 | CG33672-RA | 1082..1888 | 823..17 | 4035 | 100 | Minus |
| CG33671-RB | 1517 | CG33671-RB | 623..1429 | 823..17 | 4035 | 100 | Minus |
| CG33671-RA | 1976 | CG33671-RA | 1082..1888 | 823..17 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12634254..12635060 | 17..823 | 4035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:30:18 has no hits.
BS06996.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:39 Download gff for
BS06996.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33009-PA | 367..1173 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:47 Download gff for
BS06996.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33671-PA | 367..1173 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:53 Download gff for
BS06996.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33672-RA | 1082..1897 | 9..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:25 Download gff for
BS06996.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33671-RA | 1082..1897 | 9..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:25 Download gff for
BS06996.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12634245..12635060 | 9..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:53 Download gff for
BS06996.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8521750..8522565 | 9..823 | 99 | | Plus |
BS06996.5prime Sequence
881 bp (700 high quality bases) assembled on 2005-12-04
> BS06996.5prime
GAAGTTATCAGTCGACATGCTCAAGTTCCAGGTCCATTCTCCGGGCAAGG
TCATACTCCATGGCGAACACGCCGTGGTCTATCATCGTCCCGCCCTCGCC
GCCGTAGTGGGTTTGGGCACTACTCTGAGATTTCGGCAGCTGGAGGACAG
CCAGGTGGCAAGTTTTCAACTGGAGGCCCTTAACTGCACACTGGAGATCC
AGTTGCCGGAGTTCAATGGATTTTTGGCTGAATTTAGGAGTAAATACCCA
TCAGATAGCACGGCCAATCTGTTGGAAGCCGTCCGCGCAGAGGTGTCCAA
ACAACTTGAACGATCCGGAGGCAATGCACCGAAGCAGCACACCCAGCGGG
CATTCATCTCCATATACTATTTGCTGGCCGGCGCTGTACTCTCCGCACCC
GGCGACAAGAAACTGACGCTGCAAACCGGTTTCCAGGTGCAGGTAGACAG
CCAGCTAACCGTGGGTGCGGGTTTGGGCAGTTCCGCCTCTTTCGGAGCAG
CTTTGGCCACGACATTTCTCATTTTGGCCGGACACTTTGATAGAGACAGC
TACTTGTCGGAGGCAAACCAGGCGTTGATCTCGTCCTGGGCTTATGAATC
GGAGCGTGTTAATCATGGCACGCCCTCGGGTCTGGACAACACTGTATGCA
CCTACGGCGGAATGTTGCGGTATGTCAAGGGCCAGGGCTTCCAGTCGCTG
AAGATCCAGAAACCACTAAACATCCTGCTGGTGGACAGTCGTGTGAGTCG
CAGCACCGCCGACATTGTGGCCAAGGTTCGTCATCTGGGAGATGCCTTTC
CGCAGCTCATCGAGGCCATTTGGCAGGCTTGCGAGGAGCTTGTTGCCGCC
GCCGTTCCACTCTACGAAAGCTTTGGCAACG
BS06996.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33671-PA | 1173 | CG33671-RA | 1..865 | 17..881 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33672-RA | 1976 | CG33672-RA | 716..1580 | 17..881 | 4325 | 100 | Plus |
| CG33671-RB | 1517 | CG33671-RB | 257..1121 | 17..881 | 4325 | 100 | Plus |
| CG33671-RA | 1976 | CG33671-RA | 716..1580 | 17..881 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12634562..12635426 | 881..17 | 4325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:19:37 has no hits.
BS06996.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:40 Download gff for
BS06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33009-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:43:49 Download gff for
BS06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33671-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:49:21 Download gff for
BS06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33672-RA | 716..1580 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:35:46 Download gff for
BS06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33671-RA | 716..1580 | 17..881 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:35:46 Download gff for
BS06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12634562..12635426 | 17..881 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:49:21 Download gff for
BS06996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8522067..8522931 | 17..881 | 100 | | Minus |
BS06996.complete Sequence
1205 bp (1205 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635685
> BS06996.complete
GAAGTTATCAGTCGACATGCTCAAGTTCCAGGTCCATTCTCCGGGCAAGG
TCATACTCCATGGCGAACACGCCGTGGTCTATCATCGTCCCGCCCTCGCC
GCCGTAGTGGGTTTGGGCACTACTCTGAGATTTCGGCAGCTGGAGGACAG
CCAGGTGGCAAGTTTTCAACTGGAGGCCCTTAACTGCACACTGGAGATCC
AGTTGCCGGAGTTCAATGGATTTTTGGCTGAATTTAGGAGTAAATACCCA
TCAGATAGCACGGCCAATCTGTTGGAAGCCGTCCGCGCAGAGGTGTCCAA
ACAACTTGAACGATCCGGAGGCAATGCACCGAAGCAGCACACCCAGCGGG
CATTCATCTCCATATACTATTTGCTGGCCGGCGCTGTACTCTCCGCACCC
GGCGACAAGAAACTGACGCTGCAAACCGGTTTCCAGGTGCAGGTAGACAG
CCAGCTAACCGTGGGTGCGGGTTTGGGCAGTTCCGCCTCTTTCGGAGCAG
CTTTGGCCACGACATTTCTCATTTTGGCCGGACACTTTGATAGAGACAGC
TACTTGTCGGAGGCAAACCAGGCGTTGATCTCGTCCTGGGCTTATGAATC
GGAGCGTGTTAATCATGGCACGCCCTCGGGTCTGGACAACACTGTATGCA
CCTACGGCGGAATGTTGCGGTATGTCAAGGGCCAGGGCTTCCAGTCGCTG
AAGATCCAGAAACCACTAAACATCCTGCTGGTGGACAGTCGTGTGAGTCG
CAGCACCGCCGACATTGTGGCCAAGGTTCGTCATCTGGGAGATGCCTTTC
CGCAGCTCATCGAGGCCATTTGGCAGGCTTGCGAGGAGCTTGTTGCCGCC
GCCGTTCCACTCTACGAAAGCTTTGGCAACGCCCAAGACGATAGCTCGAA
ATTCGAGCAACTTGAACGCCTGTTCCAGATCAACAATGATCTGTTGAAGG
CTATCGGAGTGTCGCACCCGAAACTGGAGCAAATCTTCACCATCGCTTTT
AAGCGTGGCTTCTTTTCAAAGCTGACGGGCGCCGGCGCAGGTGGCTATGT
CATCGTTCTGCTTCCAGAGAACTACGAGTGCAACGAGGTCTACTGGAAGC
TTAAAGAGGAGCTCGAATCGGCGGGTTTTGGTGTTCATGTTACGACTGCC
GGCGGCGAGGGATTGCGCGTTAGTTCGCTGGATGACTGAAAGCTTTCTAG
ACCAT
BS06996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33671-RB | 1173 | CG33671-PB | 1..1173 | 17..1189 | 5865 | 100 | Plus |
| CG33671-RA | 1173 | CG33671-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33672-RA | 1976 | CG33672-RA | 716..1888 | 17..1189 | 5865 | 100 | Plus |
| CG33671-RB | 1517 | CG33671-RB | 257..1429 | 17..1189 | 5865 | 100 | Plus |
| CG33671-RA | 1976 | CG33671-RA | 716..1888 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12634254..12635426 | 1189..17 | 5865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:16:04 has no hits.
BS06996.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:34 Download gff for
BS06996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33671-RA | 1..1173 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:12 Download gff for
BS06996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33672-RA | 736..1917 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:26 Download gff for
BS06996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33672-RA | 716..1887 | 17..1188 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:34 Download gff for
BS06996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33672-RA | 736..1917 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:23 Download gff for
BS06996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33671-RA | 716..1887 | 17..1188 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:23 Download gff for
BS06996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12634255..12635426 | 17..1188 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:26 Download gff for
BS06996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8521760..8522931 | 17..1188 | 100 | | Minus |
BS06996.pep Sequence
Translation from 16 to 1188
> BS06996.pep
MLKFQVHSPGKVILHGEHAVVYHRPALAAVVGLGTTLRFRQLEDSQVASF
QLEALNCTLEIQLPEFNGFLAEFRSKYPSDSTANLLEAVRAEVSKQLERS
GGNAPKQHTQRAFISIYYLLAGAVLSAPGDKKLTLQTGFQVQVDSQLTVG
AGLGSSASFGAALATTFLILAGHFDRDSYLSEANQALISSWAYESERVNH
GTPSGLDNTVCTYGGMLRYVKGQGFQSLKIQKPLNILLVDSRVSRSTADI
VAKVRHLGDAFPQLIEAIWQACEELVAAAVPLYESFGNAQDDSSKFEQLE
RLFQINNDLLKAIGVSHPKLEQIFTIAFKRGFFSKLTGAGAGGYVIVLLP
ENYECNEVYWKLKEELESAGFGVHVTTAGGEGLRVSSLDD*
BS06996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33671-PB | 390 | CG33671-PB | 1..390 | 1..390 | 1981 | 100 | Plus |
| CG33671-PA | 390 | CG33671-PA | 1..390 | 1..390 | 1981 | 100 | Plus |
