Clone BS07004 Report

Search the DGRC for BS07004

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG31550-RA
Protein status:BS07004.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07004.3prime Sequence

972 bp (842 high quality bases) assembled on 2006-01-06

> BS07004.3prime
ATGGTCTAGAAAGCTTCTAGTAGTAGGCGCGACGTGGATTGTTCAAAGGA
TTTGGACGAAAACGATAGGCCAACATCATTCGCTTCCTGTAGGCGTCATA
TTCATTGTCGCAGTCCTCTGGCTGGGCAGCGCTGCTGACACCAAGTCCTT
GGTTTCCATCGCGTTGCGGTGCCTTGTTAACGGGGTCCACAATTCCAGCT
CCGTCCTGTCCTAAGCCCTGCCCCTCTTTCCAGCCGAGTTTTTGCAGCAT
TTGGAAGCCAATGTTGTCCTCCTTTAGTTTGTACTCCTTGTAGTCGCTTA
GATCCGGCTGCCTGTTGTTCTTCTTCGCCTCGTACTGCTCCATGAACTTC
TTGAGCTCCTCGGGGGGCAGAAAGTCGCCGATGTGATGCTTGCCTTCGCT
TTGCTTGGTCAGGGCGTTTGCCCATAGGGATGTGGCCTCCATTTCGGCTG
TTCGCAACTTGTGCTCCCACGTCCCGCCCTCAATGTCCTCGTCCGAGTCG
TATTCGTACTTGAATTTACCGCCACGGGCCAGTCGATCGATTTCCTGACG
CTTGCGCATCATGTCCTGATACAGCAGGTTTACTTTGTAGTGCTCCTCGC
ACTGCTTCCACTGCTCCTCGCTCAGCTGAGTCGATCCATAGTTGAGCCGA
GCATACTGCAACAACGCGGGATCTGTTCGCGTGATGCCACTTAGTATGGG
TTTATTTTGGTTACCAAAGTTTCCCGAAGTGCTTGAGGATGGCAACTGTT
GCTCTTTCTCGCCCCATCGGCTCTTGCGCTCGCGCTTCCTACGCTGCCTC
TGCGACTCCTTGTCGTCTTGGTCGTCCTGGTCATCGCCATCCGGCGGGTC
TCCGGATGCAGCCTCCTCCCGTTCGCGCCTCTCCTCGTCGCTCAGCTCGT
TGCGACACTCAATGCGGCGCTTGATGTTGTCCCGGTTGCGATCCATCATG
CCCCGCATGTCGACTGATAACT

BS07004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-PB 2499 CG31550-RB 1556..2499 960..17 4695 99.8 Minus
CG31550-PA 942 CG31550-RA 1..942 958..17 4685 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-RD 2700 CG31550-RD 1661..2604 960..17 4705 99.9 Minus
CG31550-RC 2573 CG31550-RC 1534..2477 960..17 4705 99.9 Minus
CG31550-RA 1849 CG31550-RA 810..1753 960..17 4705 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5488532..5489091 732..173 2800 100 Minus
3R 32079331 3R 5488080..5488308 960..732 1130 99.6 Minus
3R 32079331 3R 5489139..5489273 178..44 660 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 00:32:45 has no hits.

BS07004.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:48 Download gff for BS07004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-PB 1553..2499 17..965 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:00 Download gff for BS07004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-PB 1553..2499 17..965 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:03 Download gff for BS07004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 807..1762 7..965 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:28 Download gff for BS07004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 807..1762 7..965 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:28 Download gff for BS07004.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5488077..5488307 733..965 98 -> Minus
3R 5488532..5489090 174..732 100 -> Minus
3R 5489144..5489273 44..173 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:03 Download gff for BS07004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1313799..1314029 733..965 98 -> Minus
arm_3R 1314254..1314812 174..732 100 -> Minus
arm_3R 1314866..1314995 44..173 100 -> Minus

BS07004.5prime Sequence

886 bp (820 high quality bases) assembled on 2006-01-06

> BS07004.5prime
GAAGTTATCAGTCGACATGCGGGGCATGATGGATCGCAACCGGGACAACA
TCAAGCGCCGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGC
GAACGGGAGGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGA
CGACCAAGACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCA
AGAGCCGATGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCG
GGAAACTTTGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAAC
AGATCCCGCGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGC
TGAGCGAGGAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTG
CTGTATCAGGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCG
TGGCGGTAAATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCG
GGACGTGGGAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTA
TGGGCAAACGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGA
CTTTCTGCCCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGA
AGAAGAACAACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTA
AAGGAGGACAACATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGA
GGGGCAGGGCTTAGGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACA
AGGCACCGCAACGCGATGGAAACCAGGACTTGGTGTCAGCAGCGCTGCCC
AGCCAGAGGACTGCGACAATGAATATGACGGCTACA

BS07004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-PB 2499 CG31550-RB 1556..2366 15..825 4055 100 Plus
CG31550-PA 942 CG31550-RA 1..809 17..825 4045 100 Plus
CG31550-PB 2499 CG31550-RB 2367..2428 825..886 285 98.3 Plus
CG31550-PA 942 CG31550-RA 810..871 825..886 285 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-RD 2700 CG31550-RD 1661..2533 15..886 4325 99.8 Plus
CG31550-RC 2573 CG31550-RC 1534..2406 15..886 4325 99.8 Plus
CG31550-RA 1849 CG31550-RA 810..1682 15..886 4325 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5488532..5489091 243..802 2800 100 Plus
3R 32079331 3R 5488080..5488308 15..243 1145 100 Plus
3R 32079331 3R 5489139..5489229 797..886 375 96.7 Plus
Blast to na_te.dros performed on 2015-02-12 18:57:36 has no hits.

BS07004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:50 Download gff for BS07004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-PB 1553..2427 10..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:01 Download gff for BS07004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-PB 1553..2427 10..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:30 Download gff for BS07004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 807..1681 10..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:10 Download gff for BS07004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 807..1681 10..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:10 Download gff for BS07004.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5488077..5488307 10..242 99 -> Plus
3R 5488532..5489090 243..801 100 -> Plus
3R 5489144..5489228 802..885 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:30 Download gff for BS07004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1313799..1314029 10..242 99 -> Plus
arm_3R 1314254..1314812 243..801 100 -> Plus
arm_3R 1314866..1314950 802..885 97   Plus

BS07004.complete Sequence

974 bp (974 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635686

> BS07004.complete
GAAGTTATCAGTCGACATGCGGGGCATGATGGATCGCAACCGGGACAACA
TCAAGCGCCGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGC
GAACGGGAGGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGA
CGACCAAGACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCA
AGAGCCGATGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCG
GGAAACTTTGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAAC
AGATCCCGCGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGC
TGAGCGAGGAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTG
CTGTATCAGGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCG
TGGCGGTAAATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCG
GGACGTGGGAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTA
TGGGCAAACGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGA
CTTTCTGCCCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGA
AGAAGAACAACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTA
AAGGAGGACAACATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGA
GGGGCAGGGCTTAGGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACA
AGGCACCGCAACGCGATGGAAACCAAGGACTTGGTGTCAGCAGCGCTGCC
CAGCCAGAGGACTGCGACAATGAATATGACGCCTACAGGAAGCGAATGAT
GTTGGCCTATCGTTTTCGTCCAAATCCTTTGAACAATCCACGTCGCGCCT
ACTACTAGAAGCTTTCTAGACCAT

BS07004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-RD 2508 CG31550-PD 1565..2508 15..958 4720 100 Plus
CG31550-RB 2499 CG31550-PB 1556..2499 15..958 4720 100 Plus
CG31550-RA 942 CG31550-PA 1..942 17..958 4710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-RD 2700 CG31550-RD 1661..2604 15..958 4720 100 Plus
CG31550-RC 2573 CG31550-RC 1534..2477 15..958 4720 100 Plus
CG31550-RA 1849 CG31550-RA 810..1753 15..958 4720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5488532..5489091 243..802 2800 100 Plus
3R 32079331 3R 5488080..5488308 15..243 1145 100 Plus
3R 32079331 3R 5489139..5489273 797..931 660 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 08:35:10 has no hits.

BS07004.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:29 Download gff for BS07004.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RB 1553..2499 10..958 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:09 Download gff for BS07004.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1542..2497 10..968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:00 Download gff for BS07004.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 812..1753 17..958 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:29 Download gff for BS07004.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1542..2497 10..968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:38 Download gff for BS07004.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 812..1753 17..958 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:38 Download gff for BS07004.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5488082..5488307 17..242 100 -> Plus
3R 5488532..5489090 243..801 100 -> Plus
3R 5489144..5489273 802..931 100 -> Plus
3R 5489367..5489393 932..958 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:00 Download gff for BS07004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1313804..1314029 17..242 100 -> Plus
arm_3R 1314254..1314812 243..801 100 -> Plus
arm_3R 1314866..1314995 802..931 100 -> Plus
arm_3R 1315089..1315115 932..958 100   Plus

BS07004.pep Sequence

Translation from 16 to 957

> BS07004.pep
MRGMMDRNRDNIKRRIECRNELSDEERREREEAASGEPPDGDDQDDQDDK
ESQRQRRKRERKSRWGEKEQQLPSSSTSGNFGNQNKPILSGITRTDPALL
QYARLNYGSTQLSEEQWKQCEEHYKVNLLYQDMMRKRQEIDRLARGGKFK
YEYDSDEDIEGGTWEHKLRTAEMEATSLWANALTKQSEGKHHIGDFLPPE
ELKKFMEQYEAKKNNRQPDLSDYKEYKLKEDNIGFQMLQKLGWKEGQGLG
QDGAGIVDPVNKAPQRDGNQGLGVSSAAQPEDCDNEYDAYRKRMMLAYRF
RPNPLNNPRRAYY*

BS07004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-PA 313 CG31550-PA 1..313 1..313 1679 100 Plus
CG31550-PB 832 CG31550-PB 520..832 1..313 1679 100 Plus
CG31550-PD 835 CG31550-PD 523..835 1..313 1679 100 Plus