Clone Sequence Records
BS07004.3prime Sequence
972 bp (842 high quality bases) assembled on 2006-01-06
> BS07004.3prime
ATGGTCTAGAAAGCTTCTAGTAGTAGGCGCGACGTGGATTGTTCAAAGGA
TTTGGACGAAAACGATAGGCCAACATCATTCGCTTCCTGTAGGCGTCATA
TTCATTGTCGCAGTCCTCTGGCTGGGCAGCGCTGCTGACACCAAGTCCTT
GGTTTCCATCGCGTTGCGGTGCCTTGTTAACGGGGTCCACAATTCCAGCT
CCGTCCTGTCCTAAGCCCTGCCCCTCTTTCCAGCCGAGTTTTTGCAGCAT
TTGGAAGCCAATGTTGTCCTCCTTTAGTTTGTACTCCTTGTAGTCGCTTA
GATCCGGCTGCCTGTTGTTCTTCTTCGCCTCGTACTGCTCCATGAACTTC
TTGAGCTCCTCGGGGGGCAGAAAGTCGCCGATGTGATGCTTGCCTTCGCT
TTGCTTGGTCAGGGCGTTTGCCCATAGGGATGTGGCCTCCATTTCGGCTG
TTCGCAACTTGTGCTCCCACGTCCCGCCCTCAATGTCCTCGTCCGAGTCG
TATTCGTACTTGAATTTACCGCCACGGGCCAGTCGATCGATTTCCTGACG
CTTGCGCATCATGTCCTGATACAGCAGGTTTACTTTGTAGTGCTCCTCGC
ACTGCTTCCACTGCTCCTCGCTCAGCTGAGTCGATCCATAGTTGAGCCGA
GCATACTGCAACAACGCGGGATCTGTTCGCGTGATGCCACTTAGTATGGG
TTTATTTTGGTTACCAAAGTTTCCCGAAGTGCTTGAGGATGGCAACTGTT
GCTCTTTCTCGCCCCATCGGCTCTTGCGCTCGCGCTTCCTACGCTGCCTC
TGCGACTCCTTGTCGTCTTGGTCGTCCTGGTCATCGCCATCCGGCGGGTC
TCCGGATGCAGCCTCCTCCCGTTCGCGCCTCTCCTCGTCGCTCAGCTCGT
TGCGACACTCAATGCGGCGCTTGATGTTGTCCCGGTTGCGATCCATCATG
CCCCGCATGTCGACTGATAACT
BS07004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-PB | 2499 | CG31550-RB | 1556..2499 | 960..17 | 4695 | 99.8 | Minus |
CG31550-PA | 942 | CG31550-RA | 1..942 | 958..17 | 4685 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-RD | 2700 | CG31550-RD | 1661..2604 | 960..17 | 4705 | 99.9 | Minus |
CG31550-RC | 2573 | CG31550-RC | 1534..2477 | 960..17 | 4705 | 99.9 | Minus |
CG31550-RA | 1849 | CG31550-RA | 810..1753 | 960..17 | 4705 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5488532..5489091 | 732..173 | 2800 | 100 | Minus |
3R | 32079331 | 3R | 5488080..5488308 | 960..732 | 1130 | 99.6 | Minus |
3R | 32079331 | 3R | 5489139..5489273 | 178..44 | 660 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:32:45 has no hits.
BS07004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:48 Download gff for
BS07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-PB | 1553..2499 | 17..965 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:00 Download gff for
BS07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-PB | 1553..2499 | 17..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:03 Download gff for
BS07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 807..1762 | 7..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:28 Download gff for
BS07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 807..1762 | 7..965 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:28 Download gff for
BS07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5488077..5488307 | 733..965 | 98 | -> | Minus |
3R | 5488532..5489090 | 174..732 | 100 | -> | Minus |
3R | 5489144..5489273 | 44..173 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:03 Download gff for
BS07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1313799..1314029 | 733..965 | 98 | -> | Minus |
arm_3R | 1314254..1314812 | 174..732 | 100 | -> | Minus |
arm_3R | 1314866..1314995 | 44..173 | 100 | -> | Minus |
BS07004.5prime Sequence
886 bp (820 high quality bases) assembled on 2006-01-06
> BS07004.5prime
GAAGTTATCAGTCGACATGCGGGGCATGATGGATCGCAACCGGGACAACA
TCAAGCGCCGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGC
GAACGGGAGGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGA
CGACCAAGACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCA
AGAGCCGATGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCG
GGAAACTTTGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAAC
AGATCCCGCGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGC
TGAGCGAGGAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTG
CTGTATCAGGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCG
TGGCGGTAAATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCG
GGACGTGGGAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTA
TGGGCAAACGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGA
CTTTCTGCCCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGA
AGAAGAACAACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTA
AAGGAGGACAACATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGA
GGGGCAGGGCTTAGGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACA
AGGCACCGCAACGCGATGGAAACCAGGACTTGGTGTCAGCAGCGCTGCCC
AGCCAGAGGACTGCGACAATGAATATGACGGCTACA
BS07004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-PB | 2499 | CG31550-RB | 1556..2366 | 15..825 | 4055 | 100 | Plus |
CG31550-PA | 942 | CG31550-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
CG31550-PB | 2499 | CG31550-RB | 2367..2428 | 825..886 | 285 | 98.3 | Plus |
CG31550-PA | 942 | CG31550-RA | 810..871 | 825..886 | 285 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-RD | 2700 | CG31550-RD | 1661..2533 | 15..886 | 4325 | 99.8 | Plus |
CG31550-RC | 2573 | CG31550-RC | 1534..2406 | 15..886 | 4325 | 99.8 | Plus |
CG31550-RA | 1849 | CG31550-RA | 810..1682 | 15..886 | 4325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5488532..5489091 | 243..802 | 2800 | 100 | Plus |
3R | 32079331 | 3R | 5488080..5488308 | 15..243 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 5489139..5489229 | 797..886 | 375 | 96.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:57:36 has no hits.
BS07004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:58:50 Download gff for
BS07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-PB | 1553..2427 | 10..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:01 Download gff for
BS07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-PB | 1553..2427 | 10..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:30 Download gff for
BS07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 807..1681 | 10..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:10 Download gff for
BS07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 807..1681 | 10..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:10 Download gff for
BS07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5488077..5488307 | 10..242 | 99 | -> | Plus |
3R | 5488532..5489090 | 243..801 | 100 | -> | Plus |
3R | 5489144..5489228 | 802..885 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:30 Download gff for
BS07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1313799..1314029 | 10..242 | 99 | -> | Plus |
arm_3R | 1314254..1314812 | 243..801 | 100 | -> | Plus |
arm_3R | 1314866..1314950 | 802..885 | 97 | | Plus |
BS07004.complete Sequence
974 bp (974 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635686
> BS07004.complete
GAAGTTATCAGTCGACATGCGGGGCATGATGGATCGCAACCGGGACAACA
TCAAGCGCCGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGC
GAACGGGAGGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGA
CGACCAAGACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCA
AGAGCCGATGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCG
GGAAACTTTGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAAC
AGATCCCGCGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGC
TGAGCGAGGAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTG
CTGTATCAGGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCG
TGGCGGTAAATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCG
GGACGTGGGAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTA
TGGGCAAACGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGA
CTTTCTGCCCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGA
AGAAGAACAACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTA
AAGGAGGACAACATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGA
GGGGCAGGGCTTAGGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACA
AGGCACCGCAACGCGATGGAAACCAAGGACTTGGTGTCAGCAGCGCTGCC
CAGCCAGAGGACTGCGACAATGAATATGACGCCTACAGGAAGCGAATGAT
GTTGGCCTATCGTTTTCGTCCAAATCCTTTGAACAATCCACGTCGCGCCT
ACTACTAGAAGCTTTCTAGACCAT
BS07004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-RD | 2508 | CG31550-PD | 1565..2508 | 15..958 | 4720 | 100 | Plus |
CG31550-RB | 2499 | CG31550-PB | 1556..2499 | 15..958 | 4720 | 100 | Plus |
CG31550-RA | 942 | CG31550-PA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-RD | 2700 | CG31550-RD | 1661..2604 | 15..958 | 4720 | 100 | Plus |
CG31550-RC | 2573 | CG31550-RC | 1534..2477 | 15..958 | 4720 | 100 | Plus |
CG31550-RA | 1849 | CG31550-RA | 810..1753 | 15..958 | 4720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5488532..5489091 | 243..802 | 2800 | 100 | Plus |
3R | 32079331 | 3R | 5488080..5488308 | 15..243 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 5489139..5489273 | 797..931 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:35:10 has no hits.
BS07004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:29 Download gff for
BS07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RB | 1553..2499 | 10..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:09 Download gff for
BS07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RC | 1542..2497 | 10..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:00 Download gff for
BS07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 812..1753 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:29 Download gff for
BS07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RC | 1542..2497 | 10..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:38 Download gff for
BS07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 812..1753 | 17..958 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:38 Download gff for
BS07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5488082..5488307 | 17..242 | 100 | -> | Plus |
3R | 5488532..5489090 | 243..801 | 100 | -> | Plus |
3R | 5489144..5489273 | 802..931 | 100 | -> | Plus |
3R | 5489367..5489393 | 932..958 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:00 Download gff for
BS07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1313804..1314029 | 17..242 | 100 | -> | Plus |
arm_3R | 1314254..1314812 | 243..801 | 100 | -> | Plus |
arm_3R | 1314866..1314995 | 802..931 | 100 | -> | Plus |
arm_3R | 1315089..1315115 | 932..958 | 100 | | Plus |
BS07004.pep Sequence
Translation from 16 to 957
> BS07004.pep
MRGMMDRNRDNIKRRIECRNELSDEERREREEAASGEPPDGDDQDDQDDK
ESQRQRRKRERKSRWGEKEQQLPSSSTSGNFGNQNKPILSGITRTDPALL
QYARLNYGSTQLSEEQWKQCEEHYKVNLLYQDMMRKRQEIDRLARGGKFK
YEYDSDEDIEGGTWEHKLRTAEMEATSLWANALTKQSEGKHHIGDFLPPE
ELKKFMEQYEAKKNNRQPDLSDYKEYKLKEDNIGFQMLQKLGWKEGQGLG
QDGAGIVDPVNKAPQRDGNQGLGVSSAAQPEDCDNEYDAYRKRMMLAYRF
RPNPLNNPRRAYY*
BS07004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-PA | 313 | CG31550-PA | 1..313 | 1..313 | 1679 | 100 | Plus |
CG31550-PB | 832 | CG31550-PB | 520..832 | 1..313 | 1679 | 100 | Plus |
CG31550-PD | 835 | CG31550-PD | 523..835 | 1..313 | 1679 | 100 | Plus |