Clone Sequence Records
BS07011.3prime Sequence
930 bp (841 high quality bases) assembled on 2006-01-06
> BS07011.3prime
ATGGTCTAGAAAGCTTTTAGATCCAATGAGTCAACTGCATGGTGCCATCA
TGCGTCCTCTGGGTGTCCATGACGCTCATTTGGCGCACTAATCGCTTCAT
CGAGGGCCGATGAACAGGTCGCCCACTTCCACTGGCCGTTGTGTCCAGGG
GCGTACGCTCGTCAATGCGGGGAGCCGGCTCCCGAACCCGTCGACTGTCC
CGCAGCTCCAATTCCACCTCAGAAGCATTGGTGGAGGATCCAGCCAGGAC
ATCCAGGTTCTCGTACGACGCAGGTTGAGATAAAATCTCTGGCTTTTGAG
CGCATCTACAGCAATCTTTGAACTGCCAGTTCTTGCCAAACTCCTCGCCC
TCCTCGATGGTCTGCGGCAAGCGATGATGCAGTGTTTCCGGCAGCCGCAA
TCCCGTCATGCCGCCCAGCATCGAAAGGAAGCCCATGATGACCAAGGGCA
GTTTAAGATTGTCCTTTCCCAAGTAGGTAATAAAAGGTATGCCAATGAGA
CCCAATCCTCCAATATAACTGGAAGCACCAATGCCGATACCCCGAACCTG
AGTGGGATAAAGTTCCCCGGCAAAGGGGTATATGATCAGGAAGGAGGCGG
ATAGCAAGGCTTTGGATACTAGATACAGCACAAGGGTCTCATCCACGGCA
TCATCGGGCAACATTACAGTGATCACACAGGCCACGCCACCCAATATCAT
TGATAAGCTCAATGGCCATCTTCTGCCCCAGGTATCCATGAAGTACCAGC
AGCACAAATAGCTCGGCAGCTCCACAACAGCCGACAGAAAGAAGCTGACA
TACTGATTGGTGCCCAGCGCTGGTCCGTAATAACTGAGTCCCAGATAAAC
CGTCTCATTGGCAAACCAACTCAGCGTGATTAGGATGGTCTTTAAGCGCA
TATTGGGGGTGCGACAGAGATCTGCTAGCC
BS07011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-PB | 1803 | CG9317-RB | 890..1803 | 930..17 | 4570 | 100 | Minus |
| CG9317-PA | 2025 | CG9317-RA | 1112..2025 | 930..17 | 4570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2294 | CG9317-RC | 1142..2055 | 930..17 | 4570 | 100 | Minus |
| CG9317-RA | 2523 | CG9317-RA | 1142..2055 | 930..17 | 4570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20727968..20728367 | 291..690 | 2000 | 100 | Plus |
| 2L | 23513712 | 2L | 20727619..20727892 | 17..290 | 1370 | 100 | Plus |
| 2L | 23513712 | 2L | 20728429..20728669 | 690..930 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:50:44 has no hits.
BS07011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:04 Download gff for
BS07011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-PA | 1112..2025 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:20 Download gff for
BS07011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-PA | 1112..2025 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:02:17 Download gff for
BS07011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 1142..2064 | 6..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:57 Download gff for
BS07011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 1142..2064 | 6..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:57 Download gff for
BS07011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20727610..20727892 | 6..290 | 98 | <- | Plus |
| 2L | 20727968..20728366 | 291..689 | 100 | <- | Plus |
| 2L | 20728429..20728669 | 690..930 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:02:17 Download gff for
BS07011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20727610..20727892 | 6..290 | 98 | <- | Plus |
| arm_2L | 20727968..20728366 | 291..689 | 100 | <- | Plus |
| arm_2L | 20728429..20728669 | 690..930 | 100 | | Plus |
BS07011.5prime Sequence
884 bp (777 high quality bases) assembled on 2006-01-06
> BS07011.5prime
GAAGTTATCAGTCGACATGGCTGATACTCCGGATGACTATTGGTGTCGCA
TCCCGGAGCTACTCGACTTGCCCCTGGAGCAGCGAAAATCGCTGTCCATA
CCCAAGGAACTGGATAACGACGAACTGGTCTACAGCAAATGTTATACCTA
CGGAGTCAACTGGACGCAGCTCCTTGAATCGGGGGAAGAGGATGACCTGA
CGACCATGGAGCCGAATGCCAGTTGGCCACTGATCAAGTGCCCCCAGGGA
TGGGAGTACAACACAAGCGTCGTCTGGTCCTCCATTGTGATTGATTTCGA
TCTAGTGTGCGATCAGGATATTTATCCTACGATTGGATTGGCTGCTCTTA
ATACTGGCGGTCCAGTGGGAGTCTATCTTTTCGGATTACTCAATGATCGT
GGTGGACGAAGGCTCTCCTATTTCGTCTGTTTGGCCACTTTGCTGGCTGG
CAGCCTAATGACTTCGCTGAGCAAGGATTTTTGGACTTGGGCCGGCAGTC
GAGTCATCGTAGGACTGACCATTCCAGCTGTCTACCAGATACCATTTATA
ATATCTCTGGAACTGGTGGGTGAAAACTATCGATCCTTCGTGACTGTGAT
GACGTGCACCTTTTACACTTCGGGCATCATGCTCCTGTCCGGCGTCACTT
ATCTGGAGCGGGATTGGGTGCGCCTCTCCTACATCACATCCCTGCCGTTT
TACGCCTATTTCCTGTACATGTTCGTCATGCCGGAATCACCGAGATGGCT
TTTGATGCGCGGTCGCCTGGAGGAGGCTCTNCAGATTCTGGAGCGCATGG
CAAAGGTCAATGGCAGAGAGTTTCCCGAGGCTGTGCATCTCAAGCTGGAA
GCTCAGATACGACGGGATAAGCTCAAGAAGCAAA
BS07011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-PB | 1803 | CG9317-RB | 1..868 | 17..884 | 4271 | 99.6 | Plus |
| CG9317-PA | 2025 | CG9317-RA | 223..1090 | 17..884 | 4271 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2294 | CG9317-RC | 253..1120 | 17..884 | 4299 | 99.7 | Plus |
| CG9317-RA | 2523 | CG9317-RA | 253..1120 | 17..884 | 4299 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20728691..20729020 | 884..555 | 1609 | 99.1 | Minus |
| 2L | 23513712 | 2L | 20729076..20729334 | 554..296 | 1295 | 100 | Minus |
| 2L | 23513712 | 2L | 20729483..20729666 | 295..112 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 20729876..20729972 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:01:40 has no hits.
BS07011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:05 Download gff for
BS07011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-PA | 214..1087 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:22 Download gff for
BS07011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-PA | 214..1087 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:46:35 Download gff for
BS07011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 244..1117 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:34 Download gff for
BS07011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 244..1117 | 9..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:34 Download gff for
BS07011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20728694..20729020 | 555..881 | 99 | <- | Minus |
| 2L | 20729076..20729334 | 296..554 | 100 | <- | Minus |
| 2L | 20729483..20729665 | 113..295 | 100 | <- | Minus |
| 2L | 20729877..20729981 | 9..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:46:35 Download gff for
BS07011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20728694..20729020 | 555..881 | 99 | <- | Minus |
| arm_2L | 20729076..20729334 | 296..554 | 100 | <- | Minus |
| arm_2L | 20729483..20729665 | 113..295 | 100 | <- | Minus |
| arm_2L | 20729877..20729981 | 9..112 | 96 | | Minus |
BS07011.complete Sequence
1835 bp assembled on 2008-01-02
GenBank Submission: FJ635687
> BS07011.complete
GAAGTTATCAGTCGACATGGCTGATACTCCGGATGACTATTGGTGTCGCA
TCCCGGAGCTACTCGACTTGCCCCTGGAGCAGCGAAAATCGCTGTCCATA
CCCAAGGAACTGGATAACGACGAACTGGTCTACAGCAAATGTTATACCTA
CGGAGTCAACTGGACGCAGCTCCTTGAATCGGGGGAAGAGGATGACCTGA
CGACCATGGAGCCGAATGCCAGTTGGCCACTGATCAAGTGCCCCCAGGGA
TGGGAGTACAACACAAGCGTCGTCTGGTCCTCCATTGTGATTGATTTCGA
TCTAGTGTGCGATCAGGATATTTATCCTACGATTGGATTGGCTGCTCTTA
ATACTGGCGGTCCAGTGGGAGTCTATCTTTTCGGATTACTCAATGATCGT
GGTGGACGAAGGCTCTCCTATTTCGTCTGTTTGGCCACTTTGCTGGCTGG
CAGCCTAATGACTTCGCTGAGCAAGGATTTTTGGACTTGGGCCGGCAGTC
GAGTCATCGTAGGACTGACCATTCCAGCTGTCTACCAGATACCATTTATA
ATATCTCTGGAACTGGTGGGTGAAAACTATCGATCCTTCGTGACTGTGAT
GACGTGCACCTTTTACACTTCGGGCATCATGCTCCTGTCCGGCGTCACTT
ATCTGGAGCGGGATTGGGTGCGCCTCTCCTACATCACATCCCTGCCGTTT
TACGCCTATTTCCTGTACATGTTCGTCATGCCGGAATCACCGAGATGGCT
TTTGATGCGCGGTCGCCTGGAGGAGGCTCTCAAGATTCTGGAGCGCATGG
CAAAGGTCAATGGCAGAGAGTTTCCCGAGGCTGTGCATCTCAAGCTGGAG
GCTCAGATACGACGGGATAAGCTCAAGAAGCAAAAGAAAAAGATGGCCAA
TGTGGGGCTAGCAGATCTCTGTCGCACCCCCAATATGCGCTTAAAGACCA
TCCTAATCACGCTGAGTTGGTTTGCCAATGAGACGGTTTATCTGGGACTC
AGTTATTACGGACCAGCGCTGGGCACCAATCAGTATGTCAGCTTCTTTCT
GTCGGCTGTTGTGGAGCTGCCGAGCTATTTGTGCTGCTGGTACTTCATGG
ATACCTGGGGCAGAAGATGGCCATTGAGCTTATCAATGATATTGGGTGGC
GTGGCCTGTGTGATCACTGTAATGTTGCCCGATGATGCCGTGGATGAGAC
CCTTGTGCTGTATCTAGTATCCAAAGCCTTGCTATCCGCCTCCTTCCTGA
TCATATACCCCTTTGCCGGGGAACTTTATCCCACTCAGGTTCGGGGTATC
GGCATTGGTGCTTCCAGTTATATTGGAGGATTGGGTCTCATTGGCATACC
TTTTATTACCTACTTGGGAAAGGACAATCTTAAACTGCCCTTGGTCATCA
TGGGCTTCCTTTCGATGCTGGGCGGCATGACGGGATTGCGGCTGCCGGAA
ACACTGCATCATCGCTTGCCGCAGACCATCGAGGAGGGCGAGGAGTTTGG
CAAGAACTGGCAGTTCAAAGATTGCTGTAGATGCGCTCAAAAGCCAGAGA
TTTTATCTCAACCTGCGTCGTACGAGAACCTGGATGTCCTGGCTGGATCC
TCCACCAATGCTTCTGAGGTGGAATTGGAGCTGCGGGACAGTCGACGGGT
TCGGGAGCCGGCTCCCCGCATTGACGAGCGTACGCCCCTGGACACAACGG
CCAGTGGAAGTGGGCGACCTGTTCATCGGCCCTCGATGAAGCGATTAGTG
CGCCAAATGAGCGTCATGGACACCCAGAGGACGCATGATGGCACCATGCA
GTTGACTCATTGGATCTAAAAGCTTTCTAGACCAT
BS07011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2025 | CG9317-PC | 223..2025 | 17..1819 | 9015 | 100 | Plus |
| CG9317-RA | 2025 | CG9317-PA | 223..2025 | 17..1819 | 9015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2294 | CG9317-RC | 253..2055 | 17..1819 | 9015 | 100 | Plus |
| CG9317-RA | 2523 | CG9317-RA | 253..2055 | 17..1819 | 9015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20728429..20729020 | 1146..555 | 2960 | 100 | Minus |
| 2L | 23513712 | 2L | 20727968..20728367 | 1545..1146 | 2000 | 100 | Minus |
| 2L | 23513712 | 2L | 20727619..20727892 | 1819..1546 | 1370 | 100 | Minus |
| 2L | 23513712 | 2L | 20729076..20729334 | 554..296 | 1295 | 100 | Minus |
| 2L | 23513712 | 2L | 20729483..20729666 | 295..112 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 20729876..20729972 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:32:17 has no hits.
BS07011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:29 Download gff for
BS07011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 214..2025 | 9..1819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:26 Download gff for
BS07011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 223..2023 | 17..1817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:44 Download gff for
BS07011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 253..2053 | 17..1817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:29 Download gff for
BS07011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 214..2034 | 9..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:34 Download gff for
BS07011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 253..2053 | 17..1817 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:34 Download gff for
BS07011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20727621..20727892 | 1546..1817 | 100 | <- | Minus |
| 2L | 20727968..20728366 | 1147..1545 | 100 | <- | Minus |
| 2L | 20728429..20729020 | 555..1146 | 100 | <- | Minus |
| 2L | 20729076..20729334 | 296..554 | 100 | <- | Minus |
| 2L | 20729483..20729665 | 113..295 | 100 | <- | Minus |
| 2L | 20729877..20729972 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:44 Download gff for
BS07011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20727621..20727892 | 1546..1817 | 100 | <- | Minus |
| arm_2L | 20727968..20728366 | 1147..1545 | 100 | <- | Minus |
| arm_2L | 20728429..20729020 | 555..1146 | 100 | <- | Minus |
| arm_2L | 20729076..20729334 | 296..554 | 100 | <- | Minus |
| arm_2L | 20729483..20729665 | 113..295 | 100 | <- | Minus |
| arm_2L | 20729877..20729972 | 17..112 | 100 | | Minus |
BS07011.pep Sequence
Translation from 16 to 1818
> BS07011.pep
MADTPDDYWCRIPELLDLPLEQRKSLSIPKELDNDELVYSKCYTYGVNWT
QLLESGEEDDLTTMEPNASWPLIKCPQGWEYNTSVVWSSIVIDFDLVCDQ
DIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLATLLAGSLMTS
LSKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFVTVMTCTFY
TSGIMLLSGVTYLERDWVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGR
LEEALKILERMAKVNGREFPEAVHLKLEAQIRRDKLKKQKKKMANVGLAD
LCRTPNMRLKTILITLSWFANETVYLGLSYYGPALGTNQYVSFFLSAVVE
LPSYLCCWYFMDTWGRRWPLSLSMILGGVACVITVMLPDDAVDETLVLYL
VSKALLSASFLIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPFITYL
GKDNLKLPLVIMGFLSMLGGMTGLRLPETLHHRLPQTIEEGEEFGKNWQF
KDCCRCAQKPEILSQPASYENLDVLAGSSTNASEVELELRDSRRVREPAP
RIDERTPLDTTASGSGRPVHRPSMKRLVRQMSVMDTQRTHDGTMQLTHWI
*
BS07011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-PC | 674 | CG9317-PC | 75..674 | 1..600 | 3165 | 100 | Plus |
| CG9317-PA | 674 | CG9317-PA | 75..674 | 1..600 | 3165 | 100 | Plus |
| CG3790-PA | 604 | CG3790-PA | 42..557 | 1..510 | 991 | 40.3 | Plus |
| Orct-PB | 548 | CG6331-PB | 75..523 | 41..496 | 727 | 35.1 | Plus |
| Orct-PA | 548 | CG6331-PA | 75..523 | 41..496 | 727 | 35.1 | Plus |
