Clone Sequence Records
BS07012.3prime Sequence
895 bp (853 high quality bases) assembled on 2006-01-06
> BS07012.3prime
ATGGTCTAGAAAGCTTTCAAAATCGCTTCAACAGGAGCGGCTTATTGTTT
TCGGCGAACGCAGTGTTAATCCACTTAATGTCCGGCTTGGCAAAACGTAC
TGTCTGCCCCTCTCCGCAGGAGTTCTCACCGGCGAAGATTCCCTTGAGGC
GGACGCTAGAGCCGCTGCCACAGGCAAGGGCGCTTCCCACGTCGAATTGG
CAAGAGTCGAACTTGGTAGCACTACACACACTGCTGGAGTCGGCACTGCA
CTCGCTGCGTGCTTGCGGCAAAGTGTCGGTTACGTGCATTAGAGCGCCCT
CTTCATGTATAGATAACGCTTGCTTTCCCCAGCCCGAGGTGAAACATTGC
TCGGAATCCTTTGGGTCCTCGTCGCTTATGCAGATGGGCTGGATGTGGGA
TGCGAACTCCAAACGTCTTTCGAGTCGGATAATGGCCAAGTCGTGGGAGT
TTGTCGACGGATCGTAATCGGGATGGACATCGACGGTCTTGACTCCAGTC
AGCTGGAACGGCAGAGGCTCGTTCGTGCTCCCCAGCTCCCATTCACCAGC
CTTGACCCGAATGTCGGTCACCGGAAGACCATTTACGCAGCTGGCGGAGC
TCAAAACAAATTGGTCTCCGATGATGGCACCTCCGCAAATAAGCGTCTTA
CTGGACTCGCGCAAGATCATGGCTTGCCAGGGGATTTCGGCGAAGTTTGC
ATCCAGATCCTTAACTCCCGTGGGCTTCGTTCGCTTGTTCCTTGTCGCGC
ACACTCCGGCTAAGTTGACCGGCCAGGGGTCTACATAGTTAGGGTCACGA
CAGCACTTTCCGGGGGAGCCGTTCTCTGTCTGCAAACAGTCCGTAAGGGG
CACTCGGAAAGCTGCTTTCATGGGAGACAGCTCTACGGGGGTCTC
BS07012.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11066-PB | 1968 | scarface-RB | 1090..1968 | 895..17 | 4370 | 99.8 | Minus |
| CG11066-PA | 1968 | scarface-RA | 1090..1968 | 895..17 | 4370 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf-RA | 3390 | CG11066-RA | 1545..2423 | 895..17 | 4380 | 99.9 | Minus |
| scaf-RB | 3043 | CG11066-RB | 1198..2076 | 895..17 | 4380 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5677717..5678009 | 17..309 | 1465 | 100 | Plus |
| 2R | 25286936 | 2R | 5679227..5679496 | 310..579 | 1350 | 100 | Plus |
| 2R | 25286936 | 2R | 5679766..5679929 | 732..895 | 805 | 99.4 | Plus |
| 2R | 25286936 | 2R | 5679558..5679711 | 579..732 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:31:23 has no hits.
BS07012.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:06 Download gff for
BS07012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11066-PB | 1090..1968 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:23 Download gff for
BS07012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11066-PA | 1090..1968 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:44:54 Download gff for
BS07012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf-RB | 1198..2076 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:06 Download gff for
BS07012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf-RB | 1198..2076 | 17..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:06 Download gff for
BS07012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5679227..5679495 | 310..578 | 100 | <- | Plus |
| 2R | 5677717..5678009 | 17..309 | 100 | <- | Plus |
| 2R | 5679558..5679710 | 579..731 | 100 | <- | Plus |
| 2R | 5679766..5679929 | 732..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:44:54 Download gff for
BS07012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1567271..1567434 | 732..895 | 99 | | Plus |
| arm_2R | 1565222..1565514 | 17..309 | 100 | <- | Plus |
| arm_2R | 1566732..1567000 | 310..578 | 100 | <- | Plus |
| arm_2R | 1567063..1567215 | 579..731 | 100 | <- | Plus |
BS07012.complete Sequence
2000 bp assembled on 2010-06-24
GenBank Submission: KX800754
> BS07012.complete
GAAGTTATCAGTCGACATGTCCGCTTCACACTTCAGGGAGCAGCTCGCCC
TGTGCATTACCCTGGCAGTGCTCGCCGCTGCCAGTGGCGACTACCGGGCC
AACATGTTTCTCAATGGCCAATATCAAAACGGTATCAAGGATCAAAAGGA
GAACAACCTTTTAGTAAACCCCTCGACGAACGTGTTCCTCAACCACGCCA
TAATCAGCAGGCAAGCGTCGCCGTTCCAGGGCCCAACCTATCTGCCGCCC
AAGGAGTTCCTGAAGTGCGCTCCCGGCCAGCAGTGCGTCCGCAGTGGTCA
GTGCCTGAACGGATATTTCGCCCAGCAACTGCCCAAGATTCAAAACTGTG
ATCCGGAAACCACCGTTTGCTGTACTTACAGGCCGCCTCCCACCACCACA
ACAACAACCACTACTTCCGTGCCAGTGGCCAATTGTGCCTACGACTCCGA
CTGTGTGACTCCGGACAACTGCCGGAACGGCGAAATTAGCGCCATAAACT
ACGTAAAGAAGCAAGGACCCAACCGCTGCCCTGCTCCTAATATATGCTGC
CGCATACCCTCGACCACGCTAACGGAGGATGGGTACATTTTCAACCTTCC
GGAAAAGACCTTCCCGCTGCCGACGAAACCAGCAGTGCTCGCGATGCCCT
CCACCCAGGCGCCGTTCCGCCCGCAACCTACGACTGCTGTGCCAGCTTCT
CGACCCACCATTGAGTATTTGCCGCCCTCCACCACACAGCATCCCAGTTA
CGAGAAAGTCCAGACAAGCCGACGGCCAGTCTACTTGCCACCTTCCCCGG
CCACTGAGTCGGCCAGCAGTCTCATCCCAAAAATTAGGCCGAGGCCGGAG
CCACGCCCCCAGCCGACGCGCCGTCCAACGAATGAGTACCTGCCGCCTGC
GGCCGCTAACGAAATCCCTCGCTTCGAGCCTGACCGCGCTCCGCAGCCAT
CAAACCAGAAGCCAATCTACCGCGGAGAGGACCAGCTGTCGCCTCAGATC
TTTCCCACTCCCCAGCCAGCCAATGTTCCAAAACACTTTGCCAAGTGCGC
CTCAGCCTTAGTGTGCACCTCTGAGAACTTCTGCAACGCCATCGGAGTGC
TTTCTGAGACCCCCGTAGAGCTGTCTCCCATGGAAGCAGCTTTCCGAGTG
CCCCTTACGGACTGTTTGCAGACAGAGAACGGCTCCCCCGGAAAGTGCTG
TCGTGACCCTAACTATGTAGACCCCTGGCCGGTCAACTTAGCCGGAGTGT
GCGCGACAAGGAACAAGCGAACGAAGCCCACGGGAGTTAAGGATCTGGAT
GCAAACTTCGCCGAAATCCCCTGGCAAGCCATGATCTTGCGCGAGTCCAG
TAAGACGCTTATTTGCGGAGGTGCCATCATCGGAGACCAATTTGTTTTGA
GCTCCGCCAGCTGCGTAAATGGTCTTCCGGTGACCGACATTCGGGTCAAG
GCTGGTGAATGGGAGCTGGGGAGCACGAACGAGCCTCTGCCGTTCCAGCT
GACTGGAGTCAAGACCGTCGATGTCCATCCCGATTACGATCCGTCGACAA
ACTCCCACGACTTGGCCATTATCCGACTCGAAAGACGTTTGGAGTTCGCA
TCCCACATCCAGCCCATCTGCATAAGCGACGAGGACCCAAAGGATTCCGA
GCAATGTTTCACCTCGGGCTGGGGAAAGCAAGCGTTATCTATACATGAAG
AGGGCGCTCTAATGCACGTAACCGACACTTTGCCGCAAGCACGCAGCGAG
TGCAGTGCCGACTCCAGCAGTGTGTGTAGTGCTACCAAGTTCGACTCTTG
CCAATTCGACGTGGGAAGCGCCCTTGCCTGTGGCAGCGGCTCTAGCGTCC
GCCTCAAGGGAATCTTCGCCGGTGAGAACTCCTGCGGAGAGGGGCAGACA
GTACGTTTTGCCAAGCCGGACATTAAGTGGATTAACACTGCGTTCGCCGA
AAACAATAAGCCGCTCCTGTTGAAGCGATTTTGAAAGCTTTCTAGACCAT
BS07012.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf-RA | 1968 | CG11066-PA | 1..1968 | 17..1984 | 9840 | 100 | Plus |
| scaf-RB | 1968 | CG11066-PB | 1..1968 | 17..1984 | 9840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf-RA | 3390 | CG11066-RA | 455..2423 | 16..1984 | 9845 | 100 | Plus |
| scaf-RB | 3043 | CG11066-RB | 108..2076 | 16..1984 | 9845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5679766..5680517 | 1269..518 | 3760 | 100 | Minus |
| 2R | 25286936 | 2R | 5687676..5688003 | 343..16 | 1640 | 100 | Minus |
| 2R | 25286936 | 2R | 5677717..5678009 | 1984..1692 | 1465 | 100 | Minus |
| 2R | 25286936 | 2R | 5679227..5679496 | 1691..1422 | 1350 | 100 | Minus |
| 2R | 25286936 | 2R | 5684804..5684977 | 517..344 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 5679558..5679711 | 1422..1269 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:47:32 has no hits.
BS07012.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:41 Download gff for
BS07012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scarface-RA | 456..2422 | 17..1983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:01 Download gff for
BS07012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf-RB | 109..2075 | 17..1983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:00 Download gff for
BS07012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf-RB | 109..2075 | 17..1983 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:00 Download gff for
BS07012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5684804..5684977 | 344..517 | 100 | <- | Minus |
| 2R | 5677718..5678009 | 1692..1983 | 100 | <- | Minus |
| 2R | 5679227..5679495 | 1423..1691 | 100 | <- | Minus |
| 2R | 5679558..5679710 | 1270..1422 | 100 | <- | Minus |
| 2R | 5679766..5680517 | 518..1269 | 100 | <- | Minus |
| 2R | 5687676..5688002 | 17..343 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:01 Download gff for
BS07012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1565223..1565514 | 1692..1983 | 100 | <- | Minus |
| arm_2R | 1566732..1567000 | 1423..1691 | 100 | <- | Minus |
| arm_2R | 1567063..1567215 | 1270..1422 | 100 | <- | Minus |
| arm_2R | 1567271..1568022 | 518..1269 | 100 | <- | Minus |
| arm_2R | 1572309..1572482 | 344..517 | 100 | <- | Minus |
| arm_2R | 1575181..1575507 | 17..343 | 100 | | Minus |
BS07012.pep Sequence
Translation from 16 to 1983
> BS07012.pep
MSASHFREQLALCITLAVLAAASGDYRANMFLNGQYQNGIKDQKENNLLV
NPSTNVFLNHAIISRQASPFQGPTYLPPKEFLKCAPGQQCVRSGQCLNGY
FAQQLPKIQNCDPETTVCCTYRPPPTTTTTTTTSVPVANCAYDSDCVTPD
NCRNGEISAINYVKKQGPNRCPAPNICCRIPSTTLTEDGYIFNLPEKTFP
LPTKPAVLAMPSTQAPFRPQPTTAVPASRPTIEYLPPSTTQHPSYEKVQT
SRRPVYLPPSPATESASSLIPKIRPRPEPRPQPTRRPTNEYLPPAAANEI
PRFEPDRAPQPSNQKPIYRGEDQLSPQIFPTPQPANVPKHFAKCASALVC
TSENFCNAIGVLSETPVELSPMEAAFRVPLTDCLQTENGSPGKCCRDPNY
VDPWPVNLAGVCATRNKRTKPTGVKDLDANFAEIPWQAMILRESSKTLIC
GGAIIGDQFVLSSASCVNGLPVTDIRVKAGEWELGSTNEPLPFQLTGVKT
VDVHPDYDPSTNSHDLAIIRLERRLEFASHIQPICISDEDPKDSEQCFTS
GWGKQALSIHEEGALMHVTDTLPQARSECSADSSSVCSATKFDSCQFDVG
SALACGSGSSVRLKGIFAGENSCGEGQTVRFAKPDIKWINTAFAENNKPL
LLKRF*
BS07012.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf-PA | 655 | CG11066-PA | 1..655 | 1..655 | 3525 | 100 | Plus |
| scaf-PB | 655 | CG11066-PB | 1..655 | 1..655 | 3525 | 100 | Plus |
| CG40160-PH | 421 | CG40160-PH | 164..412 | 422..646 | 297 | 30.1 | Plus |
| CG40160-PG | 421 | CG40160-PG | 164..412 | 422..646 | 297 | 30.1 | Plus |
| CG40160-PF | 421 | CG40160-PF | 164..412 | 422..646 | 297 | 30.1 | Plus |
