Clone BS07015 Report

Search the DGRC for BS07015

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptLsd-2-RA
Protein status:BS07015.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07015.3prime Sequence

802 bp (756 high quality bases) assembled on 2006-01-06

> BS07015.3prime
ATGGTCTAGAAAGCTTCTACTGAGACGACACCGCCGGCGCCCGTTTGCTT
TTGGCCACATGTGGCAAGGCAACAACGGGCTTGTTGTTGCTGGTGGAGCT
GGTGGTAGTGGTGGTAGTGGTGCTAGTGGTGGTTCCAAATGGCGAACAGG
CGTCACTGCTGCTGCCACCAGACTGCTCCACATTCGTGCCCATCGACGAG
TTAATAAAATTGATGTACTGATGCAACTTGAGGGCGGCTATCAGGGAGCT
CAGATAGTCGTTGATGTTGCCCTTCTGGACCTGCTTGATCTGTCGGGAGA
CATTTCGATAGACGCGACGCGAGATCTTATTGGATAGCCGTCCAACTGTC
TGTACTGTGTGTAGGACTGGATCCTCGCTGGCGGGAACTGGCATGTCATT
TTCAGAACTCTTGCCATTCTGCACGACGGCATTTTGTTTATCATCATTAT
CTTCCTCGACATCCGACTCGCACTTGGGGAAGTAGTATTCAAGGAGGCGC
TCGGCCAGCGCCGTGGTGGTGTCCACTCCGTTGACAGCCAGACTGCCGTA
CTGGGTGGCCAGCACCTCGTTGGCCTTCTGCCAGGCGAGATCCTTCAGCG
AGGCGGCCTTCTGCTGACCAGCTGCCTTGAACTTGACGACGCGCTCCAGA
TGGGGCTGCACCACATCGATCACCTTGCTCTTGGCCTGGTTGTAGATCTC
CTGGGGTGTGTCCTTGATGATCGGCGCCTTTACCTCAAGCTTATCGATGC
CCTTGACCAGGGTCTGGTCCACATAGGCGATGGGTCGGTCCAGTTTGGTG
AC

BS07015.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9057-PA 1059 Lsd-2-RA 274..1059 802..17 3930 100 Minus
CG9057-PC 1221 Lsd-2-RC 844..1221 394..17 1890 100 Minus
CG9057-PB 1008 Lsd-2-RB 632..1008 393..17 1885 100 Minus
CG9057-PC 1221 Lsd-2-RC 274..631 802..445 1790 100 Minus
CG9057-PB 1008 Lsd-2-RB 274..631 802..445 1790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-RA 2148 CG9057-RA 554..1339 802..17 3930 100 Minus
Lsd-2-RF 4598 CG9057-RF 554..963 802..393 2050 100 Minus
Lsd-2-RE 2330 CG9057-RE 554..963 802..393 2050 100 Minus
Lsd-2-RF 4598 CG9057-RF 1145..1521 393..17 1885 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15072272..15072648 17..393 1885 100 Plus
X 23542271 X 15073933..15074294 441..802 1795 99.7 Plus
X 23542271 X 15073341..15073392 394..445 260 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:28:22 has no hits.

BS07015.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:12 Download gff for BS07015.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-PA 274..1059 17..802 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:31 Download gff for BS07015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9057-PA 274..1059 17..802 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:19 Download gff for BS07015.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 554..1339 17..802 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:31:07 Download gff for BS07015.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 554..1339 17..802 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:31:07 Download gff for BS07015.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15073937..15074294 445..802 100   Plus
X 15072272..15072648 17..393 100 <- Plus
X 15073341..15073391 394..444 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:19 Download gff for BS07015.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14966305..14966681 17..393 100 <- Plus
arm_X 14967374..14967424 394..444 100 <- Plus
arm_X 14967970..14968327 445..802 100   Plus

BS07015.5prime Sequence

909 bp (801 high quality bases) assembled on 2006-01-06

> BS07015.5prime
GAAGTTATCAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGA
ACGGAACAACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAG
GATGCCAAGGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAA
ATTGCCCGTGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCA
AAGTAAAAGGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAG
GATTGTGTGACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACT
GGACCGACCCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATA
AGCTTGAGGTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTAC
AACCAGGCCAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCG
CGTCGTCAAGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGG
ATCTCGCCTGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGT
CTGGCTGTCAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCT
TGAATACTACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATG
ATAAACAAAATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATG
CCAGTTCCCGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGG
ACGGCTATCCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGAC
AGATNCAGCAAGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTG
ATAGCCGCCCTCAAGTTGCATCAGTACATCAATTTTATTACTCGTCGATG
GGCACGAAT

BS07015.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9057-PA 1059 Lsd-2-RA 1..874 17..890 4301 99.6 Plus
CG9057-PC 1221 Lsd-2-RC 1..631 17..647 3155 100 Plus
CG9057-PB 1008 Lsd-2-RB 1..631 17..647 3155 100 Plus
CG9057-PC 1221 Lsd-2-RC 844..1036 698..890 896 98.4 Plus
CG9057-PB 1008 Lsd-2-RB 632..823 699..890 891 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-RA 2148 CG9057-RA 280..1174 16..909 4409 99.6 Plus
Lsd-2-RF 4598 CG9057-RF 280..963 16..699 3420 100 Plus
Lsd-2-RE 2330 CG9057-RE 280..963 16..699 3420 100 Plus
Lsd-2-RF 4598 CG9057-RF 1145..1356 699..909 994 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15073933..15074376 651..208 2205 99.8 Minus
X 23542271 X 15075747..15075941 210..16 975 100 Minus
X 23542271 X 15072437..15072648 909..699 969 98.1 Minus
X 23542271 X 15073341..15073392 698..647 260 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:49:41 has no hits.

BS07015.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:13 Download gff for BS07015.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-PA 1..894 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:32 Download gff for BS07015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9057-PA 1..894 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:46 Download gff for BS07015.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 280..1174 16..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:37 Download gff for BS07015.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 280..1174 16..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:37 Download gff for BS07015.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15075748..15075941 16..209 100   Minus
X 15073937..15074374 210..647 100 <- Minus
X 15072437..15072648 699..909 98 <- Minus
X 15073341..15073391 648..698 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:46 Download gff for BS07015.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14969781..14969974 16..209 100   Minus
arm_X 14966470..14966681 699..909 98 <- Minus
arm_X 14967374..14967424 648..698 100 <- Minus
arm_X 14967970..14968407 210..647 100 <- Minus

BS07015.complete Sequence

1091 bp (1091 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635688

> BS07015.complete
GAAGTTATCAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGA
ACGGAACAACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAG
GATGCCAAGGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAA
ATTGCCCGTGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCA
AAGTAAAAGGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAG
GATTGTGTGACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACT
GGACCGACCCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATA
AGCTTGAGGTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTAC
AACCAGGCCAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCG
CGTCGTCAAGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGG
ATCTCGCCTGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGT
CTGGCTGTCAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCT
TGAATACTACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATG
ATAAACAAAATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATG
CCAGTTCCCGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGG
ACGGCTATCCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGAC
AGATCAAGCAGGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTG
ATAGCCGCCCTCAAGTTGCATCAGTACATCAATTTTATTAACTCGTCGAT
GGGCACGAATGTGGAGCAGTCTGGTGGCAGCAGCAGTGACGCCTGTTCGC
CATTTGGAACCACCACTAGCACCACTACCACCACTACCACCAGCTCCACC
AGCAACAACAAGCCCGTTGTTGCCTTGCCACATGTGGCCAAAAGCAAACG
GGCGCCGGCGGTGTCGTCTCAGTAGAAGCTTTCTAGACCAT

BS07015.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-RA 1059 CG9057-PA 1..1059 17..1075 5295 100 Plus
Lsd-2-RF 1008 CG9057-PF 1..683 17..699 3415 100 Plus
Lsd-2-RE 1008 CG9057-PE 1..683 17..699 3415 100 Plus
Lsd-2-RF 1008 CG9057-PF 865..1008 699..842 720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-RA 2148 CG9057-RA 280..1339 16..1075 5300 100 Plus
Lsd-2-RF 4598 CG9057-RF 280..963 16..699 3420 100 Plus
Lsd-2-RE 2330 CG9057-RE 280..963 16..699 3420 100 Plus
Lsd-2-RF 4598 CG9057-RF 1145..1521 699..1075 1885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15073933..15074376 651..208 2205 99.8 Minus
X 23542271 X 15072272..15072648 1075..699 1885 100 Minus
X 23542271 X 15075747..15075941 210..16 975 100 Minus
X 23542271 X 15073341..15073392 698..647 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:58:00 has no hits.

BS07015.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:11 Download gff for BS07015.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 1..1059 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:45 Download gff for BS07015.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 263..1322 16..1075 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:15 Download gff for BS07015.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 281..1339 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:11 Download gff for BS07015.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 263..1322 16..1075 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:39 Download gff for BS07015.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 281..1339 17..1075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:39 Download gff for BS07015.complete
Subject Subject Range Query Range Percent Splice Strand
X 15072272..15072648 699..1075 100 <- Minus
X 15073341..15073391 648..698 100 <- Minus
X 15073937..15074374 210..647 100 <- Minus
X 15075748..15075940 17..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:15 Download gff for BS07015.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14969781..14969973 17..209 100   Minus
arm_X 14966305..14966681 699..1075 100 <- Minus
arm_X 14967374..14967424 648..698 100 <- Minus
arm_X 14967970..14968407 210..647 100 <- Minus

BS07015.pep Sequence

Translation from 16 to 1074

> BS07015.pep
MASAEQKHATGNGTTGNGTAMNDVDQPKDAKDLLPHLESLERIIKLPVVN
AAWDKSQDVYGKVKGKNRVFEWALTAAEDCVTRAVTTAAPFVTKLDRPIA
YVDQTLVKGIDKLEVKAPIIKDTPQEIYNQAKSKVIDVVQPHLERVVKFK
AAGQQKAASLKDLAWQKANEVLATQYGSLAVNGVDTTTALAERLLEYYFP
KCESDVEEDNDDKQNAVVQNGKSSENDMPVPASEDPVLHTVQTVGRLSNK
ISRRVYRNVSRQIKQVQKGNINDYLSSLIAALKLHQYINFINSSMGTNVE
QSGGSSSDACSPFGTTTSTTTTTTTSSTSNNKPVVALPHVAKSKRAPAVS
SQ*

BS07015.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-PA 352 CG9057-PA 1..352 1..352 1787 100 Plus
Lsd-2-PB 335 CG9057-PB 1..335 1..352 1668 94.9 Plus
Lsd-2-PF 335 CG9057-PF 1..228 1..228 1163 99.6 Plus
Lsd-2-PE 335 CG9057-PE 1..228 1..228 1163 99.6 Plus
Lsd-2-PD 318 CG9057-PD 1..221 1..227 1076 94.3 Plus