Clone Sequence Records
BS07015.3prime Sequence
802 bp (756 high quality bases) assembled on 2006-01-06
> BS07015.3prime
ATGGTCTAGAAAGCTTCTACTGAGACGACACCGCCGGCGCCCGTTTGCTT
TTGGCCACATGTGGCAAGGCAACAACGGGCTTGTTGTTGCTGGTGGAGCT
GGTGGTAGTGGTGGTAGTGGTGCTAGTGGTGGTTCCAAATGGCGAACAGG
CGTCACTGCTGCTGCCACCAGACTGCTCCACATTCGTGCCCATCGACGAG
TTAATAAAATTGATGTACTGATGCAACTTGAGGGCGGCTATCAGGGAGCT
CAGATAGTCGTTGATGTTGCCCTTCTGGACCTGCTTGATCTGTCGGGAGA
CATTTCGATAGACGCGACGCGAGATCTTATTGGATAGCCGTCCAACTGTC
TGTACTGTGTGTAGGACTGGATCCTCGCTGGCGGGAACTGGCATGTCATT
TTCAGAACTCTTGCCATTCTGCACGACGGCATTTTGTTTATCATCATTAT
CTTCCTCGACATCCGACTCGCACTTGGGGAAGTAGTATTCAAGGAGGCGC
TCGGCCAGCGCCGTGGTGGTGTCCACTCCGTTGACAGCCAGACTGCCGTA
CTGGGTGGCCAGCACCTCGTTGGCCTTCTGCCAGGCGAGATCCTTCAGCG
AGGCGGCCTTCTGCTGACCAGCTGCCTTGAACTTGACGACGCGCTCCAGA
TGGGGCTGCACCACATCGATCACCTTGCTCTTGGCCTGGTTGTAGATCTC
CTGGGGTGTGTCCTTGATGATCGGCGCCTTTACCTCAAGCTTATCGATGC
CCTTGACCAGGGTCTGGTCCACATAGGCGATGGGTCGGTCCAGTTTGGTG
AC
BS07015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9057-PA | 1059 | Lsd-2-RA | 274..1059 | 802..17 | 3930 | 100 | Minus |
CG9057-PC | 1221 | Lsd-2-RC | 844..1221 | 394..17 | 1890 | 100 | Minus |
CG9057-PB | 1008 | Lsd-2-RB | 632..1008 | 393..17 | 1885 | 100 | Minus |
CG9057-PC | 1221 | Lsd-2-RC | 274..631 | 802..445 | 1790 | 100 | Minus |
CG9057-PB | 1008 | Lsd-2-RB | 274..631 | 802..445 | 1790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-2-RA | 2148 | CG9057-RA | 554..1339 | 802..17 | 3930 | 100 | Minus |
Lsd-2-RF | 4598 | CG9057-RF | 554..963 | 802..393 | 2050 | 100 | Minus |
Lsd-2-RE | 2330 | CG9057-RE | 554..963 | 802..393 | 2050 | 100 | Minus |
Lsd-2-RF | 4598 | CG9057-RF | 1145..1521 | 393..17 | 1885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15072272..15072648 | 17..393 | 1885 | 100 | Plus |
X | 23542271 | X | 15073933..15074294 | 441..802 | 1795 | 99.7 | Plus |
X | 23542271 | X | 15073341..15073392 | 394..445 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:28:22 has no hits.
BS07015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:12 Download gff for
BS07015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-PA | 274..1059 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:31 Download gff for
BS07015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9057-PA | 274..1059 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:19 Download gff for
BS07015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 554..1339 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:31:07 Download gff for
BS07015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 554..1339 | 17..802 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:31:07 Download gff for
BS07015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15073937..15074294 | 445..802 | 100 | | Plus |
X | 15072272..15072648 | 17..393 | 100 | <- | Plus |
X | 15073341..15073391 | 394..444 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:19 Download gff for
BS07015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14966305..14966681 | 17..393 | 100 | <- | Plus |
arm_X | 14967374..14967424 | 394..444 | 100 | <- | Plus |
arm_X | 14967970..14968327 | 445..802 | 100 | | Plus |
BS07015.5prime Sequence
909 bp (801 high quality bases) assembled on 2006-01-06
> BS07015.5prime
GAAGTTATCAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGA
ACGGAACAACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAG
GATGCCAAGGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAA
ATTGCCCGTGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCA
AAGTAAAAGGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAG
GATTGTGTGACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACT
GGACCGACCCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATA
AGCTTGAGGTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTAC
AACCAGGCCAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCG
CGTCGTCAAGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGG
ATCTCGCCTGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGT
CTGGCTGTCAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCT
TGAATACTACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATG
ATAAACAAAATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATG
CCAGTTCCCGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGG
ACGGCTATCCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGAC
AGATNCAGCAAGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTG
ATAGCCGCCCTCAAGTTGCATCAGTACATCAATTTTATTACTCGTCGATG
GGCACGAAT
BS07015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9057-PA | 1059 | Lsd-2-RA | 1..874 | 17..890 | 4301 | 99.6 | Plus |
CG9057-PC | 1221 | Lsd-2-RC | 1..631 | 17..647 | 3155 | 100 | Plus |
CG9057-PB | 1008 | Lsd-2-RB | 1..631 | 17..647 | 3155 | 100 | Plus |
CG9057-PC | 1221 | Lsd-2-RC | 844..1036 | 698..890 | 896 | 98.4 | Plus |
CG9057-PB | 1008 | Lsd-2-RB | 632..823 | 699..890 | 891 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-2-RA | 2148 | CG9057-RA | 280..1174 | 16..909 | 4409 | 99.6 | Plus |
Lsd-2-RF | 4598 | CG9057-RF | 280..963 | 16..699 | 3420 | 100 | Plus |
Lsd-2-RE | 2330 | CG9057-RE | 280..963 | 16..699 | 3420 | 100 | Plus |
Lsd-2-RF | 4598 | CG9057-RF | 1145..1356 | 699..909 | 994 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15073933..15074376 | 651..208 | 2205 | 99.8 | Minus |
X | 23542271 | X | 15075747..15075941 | 210..16 | 975 | 100 | Minus |
X | 23542271 | X | 15072437..15072648 | 909..699 | 969 | 98.1 | Minus |
X | 23542271 | X | 15073341..15073392 | 698..647 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:49:41 has no hits.
BS07015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:13 Download gff for
BS07015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-PA | 1..894 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:32 Download gff for
BS07015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9057-PA | 1..894 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:46 Download gff for
BS07015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 280..1174 | 16..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:37 Download gff for
BS07015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 280..1174 | 16..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:37 Download gff for
BS07015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15075748..15075941 | 16..209 | 100 | | Minus |
X | 15073937..15074374 | 210..647 | 100 | <- | Minus |
X | 15072437..15072648 | 699..909 | 98 | <- | Minus |
X | 15073341..15073391 | 648..698 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:46 Download gff for
BS07015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14969781..14969974 | 16..209 | 100 | | Minus |
arm_X | 14966470..14966681 | 699..909 | 98 | <- | Minus |
arm_X | 14967374..14967424 | 648..698 | 100 | <- | Minus |
arm_X | 14967970..14968407 | 210..647 | 100 | <- | Minus |
BS07015.complete Sequence
1091 bp (1091 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635688
> BS07015.complete
GAAGTTATCAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGA
ACGGAACAACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAG
GATGCCAAGGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAA
ATTGCCCGTGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCA
AAGTAAAAGGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAG
GATTGTGTGACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACT
GGACCGACCCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATA
AGCTTGAGGTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTAC
AACCAGGCCAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCG
CGTCGTCAAGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGG
ATCTCGCCTGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGT
CTGGCTGTCAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCT
TGAATACTACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATG
ATAAACAAAATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATG
CCAGTTCCCGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGG
ACGGCTATCCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGAC
AGATCAAGCAGGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTG
ATAGCCGCCCTCAAGTTGCATCAGTACATCAATTTTATTAACTCGTCGAT
GGGCACGAATGTGGAGCAGTCTGGTGGCAGCAGCAGTGACGCCTGTTCGC
CATTTGGAACCACCACTAGCACCACTACCACCACTACCACCAGCTCCACC
AGCAACAACAAGCCCGTTGTTGCCTTGCCACATGTGGCCAAAAGCAAACG
GGCGCCGGCGGTGTCGTCTCAGTAGAAGCTTTCTAGACCAT
BS07015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-2-RA | 1059 | CG9057-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Lsd-2-RF | 1008 | CG9057-PF | 1..683 | 17..699 | 3415 | 100 | Plus |
Lsd-2-RE | 1008 | CG9057-PE | 1..683 | 17..699 | 3415 | 100 | Plus |
Lsd-2-RF | 1008 | CG9057-PF | 865..1008 | 699..842 | 720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-2-RA | 2148 | CG9057-RA | 280..1339 | 16..1075 | 5300 | 100 | Plus |
Lsd-2-RF | 4598 | CG9057-RF | 280..963 | 16..699 | 3420 | 100 | Plus |
Lsd-2-RE | 2330 | CG9057-RE | 280..963 | 16..699 | 3420 | 100 | Plus |
Lsd-2-RF | 4598 | CG9057-RF | 1145..1521 | 699..1075 | 1885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15073933..15074376 | 651..208 | 2205 | 99.8 | Minus |
X | 23542271 | X | 15072272..15072648 | 1075..699 | 1885 | 100 | Minus |
X | 23542271 | X | 15075747..15075941 | 210..16 | 975 | 100 | Minus |
X | 23542271 | X | 15073341..15073392 | 698..647 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:58:00 has no hits.
BS07015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:11 Download gff for
BS07015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 1..1059 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:45 Download gff for
BS07015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 263..1322 | 16..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:15 Download gff for
BS07015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 281..1339 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:11 Download gff for
BS07015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 263..1322 | 16..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:39 Download gff for
BS07015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 281..1339 | 17..1075 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:39 Download gff for
BS07015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15072272..15072648 | 699..1075 | 100 | <- | Minus |
X | 15073341..15073391 | 648..698 | 100 | <- | Minus |
X | 15073937..15074374 | 210..647 | 100 | <- | Minus |
X | 15075748..15075940 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:15 Download gff for
BS07015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14969781..14969973 | 17..209 | 100 | | Minus |
arm_X | 14966305..14966681 | 699..1075 | 100 | <- | Minus |
arm_X | 14967374..14967424 | 648..698 | 100 | <- | Minus |
arm_X | 14967970..14968407 | 210..647 | 100 | <- | Minus |
BS07015.pep Sequence
Translation from 16 to 1074
> BS07015.pep
MASAEQKHATGNGTTGNGTAMNDVDQPKDAKDLLPHLESLERIIKLPVVN
AAWDKSQDVYGKVKGKNRVFEWALTAAEDCVTRAVTTAAPFVTKLDRPIA
YVDQTLVKGIDKLEVKAPIIKDTPQEIYNQAKSKVIDVVQPHLERVVKFK
AAGQQKAASLKDLAWQKANEVLATQYGSLAVNGVDTTTALAERLLEYYFP
KCESDVEEDNDDKQNAVVQNGKSSENDMPVPASEDPVLHTVQTVGRLSNK
ISRRVYRNVSRQIKQVQKGNINDYLSSLIAALKLHQYINFINSSMGTNVE
QSGGSSSDACSPFGTTTSTTTTTTTSSTSNNKPVVALPHVAKSKRAPAVS
SQ*
BS07015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-2-PA | 352 | CG9057-PA | 1..352 | 1..352 | 1787 | 100 | Plus |
Lsd-2-PB | 335 | CG9057-PB | 1..335 | 1..352 | 1668 | 94.9 | Plus |
Lsd-2-PF | 335 | CG9057-PF | 1..228 | 1..228 | 1163 | 99.6 | Plus |
Lsd-2-PE | 335 | CG9057-PE | 1..228 | 1..228 | 1163 | 99.6 | Plus |
Lsd-2-PD | 318 | CG9057-PD | 1..221 | 1..227 | 1076 | 94.3 | Plus |