Clone BS07017 Report

Search the DGRC for BS07017

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptMms19-RB
Protein status:BS07017.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07017.3prime Sequence

869 bp (813 high quality bases) assembled on 2006-01-06

> BS07017.3prime
ATGGTCTAGAAAGCTTCTAATTCGGACTAGGCGCACCGACCAGGTACCAC
GCATTCCTGGCCTTCACCGCTGTGTTCCGCACCAGACGCTTGGGATCATC
CAAGGCGGCGGCCAGGGCCAGAGTAACATCGACTTTGTGGGGCAACAGGA
CGAAGGTAGGATACTTTGTCACATCGTAGAGCAGCTGCAGCGCCGCAATT
CGCACTTGCATGGTATGCTGAGCCTTGTATTTCGACAGCTCCAGACAGCT
GGGTATGAGGTGGGCCAAATGCCCTTGGAAATACGTGTCCTGCTGCGCCA
CAAACTTTTCACAGATGCCCAATGCAATGCACAGCGACTGCGCCTCGTTG
TGCTCCTCCAAGCTCTTGAAAAGCAGCGGACCGAGCTGCTCAATGTTTAG
CTTAATAACCGCCTGTGGCGTGGCTTTCAGTACGTAGACAAAAGCCTTCA
AGTGGTGCACACAGTAGTTGGCAAGTTTGCTGCCCATTTTTCCCATGATA
GTGTGGAAAAGCTTCTGCTTGTAGAGGAATTTAACGACAGGCAAATCCAA
TTCTGGGTACTCGGCGGCAATGATGTCGAATCCCAAGGCAGCGGCAGTGC
TCAAACTGGGATGTTTTAGTAGATCCGAGAGATCACCAACAACATCGGCA
GCCTCATCGAATCCTGCGACTACTAGGCCCTTCCCCACCCATGCAAGGAT
CTCCACCGCCCGAACATCGCCCTTTTTAATAGCCACCTTCAGTTGCTCCG
TGATTTTTTTGACCTTCCTTAGATTAGCTGGGTTCGACTCCATCTTGTTG
ACCATGCTACAGAGCAGGTGGTGAGCGATTACACGCAACTGTTCGTTGTC
CGAATTAAGCGAAAGCTGC

BS07017.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12005-PB 2880 Mms19-RB 2028..2880 869..17 4265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-RB 3233 CG12005-RB 2127..2979 869..17 4265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5235306..5235728 631..209 2115 100 Minus
3R 32079331 3R 5235001..5235238 869..632 1190 100 Minus
3R 32079331 3R 5235842..5236034 209..17 965 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:59:29 has no hits.

BS07017.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:17 Download gff for BS07017.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12005-PA 2028..2880 17..869 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:36 Download gff for BS07017.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12005-PB 2028..2880 17..869 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:09:10 Download gff for BS07017.3prime
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 2127..2982 14..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:04 Download gff for BS07017.3prime
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 2127..2982 14..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:04 Download gff for BS07017.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5235001..5235238 632..869 100 -> Minus
3R 5235306..5235728 209..631 100 -> Minus
3R 5235843..5236038 14..208 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:09:10 Download gff for BS07017.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1060723..1060960 632..869 100 -> Minus
arm_3R 1061028..1061450 209..631 100 -> Minus
arm_3R 1061565..1061760 14..208 98 -> Minus

BS07017.5prime Sequence

956 bp (858 high quality bases) assembled on 2006-01-06

> BS07017.5prime
GAAGTTATCAGTCGACATGACAACGCCCACGCGCGCCACCCTGGAAAAGG
CTCTGAAAAGCGACCAGAAGCTTGTGAATTCCGCCACACAGATAGCCAAG
GATCTGACCGCCAAGGCATATGACATATCTGCTCTGGCCGAGGCACTGGG
CTTCGCCCTGTCCTCTCCGGACATGGAGGAGCGTGTGGCCGGAACCAACT
TGCTCTCCGCCGTGTTGATAGCACTGCCCCAGGATCTGCTGCAAGAGCGG
CAGCTGGAGTTCCTCAGCACCTTTTACATGGACCGCCTGCGCGACCATCA
CAACGTAATGCCAGCCATTATCGATGGAATCGACGCCCTGGTTCACATGA
AAGCTCTACCGCGCGCCCAGATTCCCCAGATTCTGCAGTCATTCTTCGAG
CACACCACCTGCCAGTCGCAGACGCGGAGCGACCGCACCAAGCTGTTCCA
CATTTTCCAGTACTTGACGGAAAACTTCCAGGACGAGCTGCAAGCGATGG
CCGGTGACTTCGTCTACGGCCTGATCAATTCCATTGACGGCGAGCGTGAC
CCCCGCAACCTTGACATCATTTTCAGCTTCATGCCCGAGTTCTTGTCAAC
GTATCCGCTGCTGCATTTGGCCGAAGAGATGTTTGAGATCTTTGCGTGTT
ACTTTCCAATCGACTTTAATCCCAGCAAGCAGGATCCAGCGGCCATAACC
CGTGATGAATTGTCCAAGAAGTTGACTAACTGCCTGGTAGCCAACAACGA
ATTCGCTGAGGGCACAGTGGTACTGGCCATAGAAAAGCTGGAGAGTGAGT
TGCTGGTTGCCAAACTGGACTCCATAGAACTGCTGCACCAAGCTGCCGTG
AAGTTCCCGCCCTCCGTTCTGGAGCCGCACTTCGATCAGATATGGCAGGC
TCTGAAAACAGAGACTTTTCCCAGAAATGACAATGAGGAGATACTGAAAG
CTTCCC

BS07017.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12005-PB 2880 Mms19-RB 1..940 17..956 4625 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-RB 3233 CG12005-RB 100..1039 17..956 4655 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5232790..5233174 101..485 1925 100 Plus
3R 32079331 3R 5233384..5233734 485..835 1755 100 Plus
3R 32079331 3R 5233792..5233913 835..956 565 97.5 Plus
3R 32079331 3R 5232642..5232726 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:25:31 has no hits.

BS07017.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:18 Download gff for BS07017.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12005-PA 1..940 17..956 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:38 Download gff for BS07017.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12005-PB 1..940 17..956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:59:04 Download gff for BS07017.5prime
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 100..1039 17..956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:13 Download gff for BS07017.5prime
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 100..1039 17..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:13 Download gff for BS07017.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5233385..5233734 486..835 100 -> Plus
3R 5233793..5233913 836..956 97   Plus
3R 5232642..5232726 17..101 100 -> Plus
3R 5232791..5233174 102..485 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:59:04 Download gff for BS07017.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1058513..1058896 102..485 100 -> Plus
arm_3R 1058364..1058448 17..101 100 -> Plus
arm_3R 1059107..1059456 486..835 100 -> Plus
arm_3R 1059515..1059635 836..956 97   Plus

BS07017.complete Sequence

2912 bp assembled on 2008-01-02

GenBank Submission: FJ635689

> BS07017.complete
GAAGTTATCAGTCGACATGACAACGCCCACGCGCGCCACCCTGGAAAAGG
CTCTGAAAAGCGACCAGAAGCTTGTGAATTCCGCCACACAGATAGCCAAG
GATCTGACCGCCAAGGCATATGACATATCTGCTCTGGCCGAGGCACTGGG
CTTCGCCCTGTCCTCTCCGGACATGGAGGAGCGTGTGGCCGGAACCAACT
TGCTCTCCGCCGTGTTGATAGCACTGCCCCAGGATCTGCTGCAAGAGCGG
CAGCTGGAGTTCCTCAGCACCTTTTACATGGACCGCCTGCGCGACCATCA
CAACGTAATGCCAGCCATTATCGATGGAATCGACGCCCTGGTTCACATGA
AAGCTCTACCGCGCGCCCAGATTCCCCAGATTCTGCAGTCATTCTTCGAG
CACACCACCTGCCAGTCGCAGACGCGGAGCGACCGCACCAAGCTGTTCCA
CATTTTCCAGTACTTGACGGAAAACTTCCAGGACGAGCTGCAAGCGATGG
CCGGTGACTTCGTCTACGGCCTGATCAATTCCATTGACGGCGAGCGTGAC
CCCCGCAACCTTGACATCATTTTCAGCTTCATGCCCGAGTTCTTGTCAAC
GTATCCGCTGCTGCATTTGGCCGAAGAGATGTTTGAGATCTTTGCGTGTT
ACTTTCCAATCGACTTTAATCCCAGCAAGCAGGATCCAGCGGCCATAACC
CGTGATGAATTGTCCAAGAAGTTGACTAACTGCCTGGTAGCCAACAACGA
ATTCGCTGAGGGCACAGTGGTACTGGCCATAGAAAAGCTGGAGAGTGAGT
TGCTGGTTGCCAAACTGGACTCCATAGAACTGCTGCACCAAGCTGCCGTG
AAGTTCCCGCCTTCCGTTCTGGAGCCGCACTTCGATCAGATATGGCAGGC
TCTGAAAACAGAGACTTTTCCAGGAAATGACAATGAGGAGATACTGAAAG
CTTCCCTTAAGGCGTTGTCTGCGCTCCTGGAGAGAGCTGCTCACATACCG
GATATAAGCCACAGCTACCAGAGCTCTATTCTGGGCGTAATTCTACCGCA
TCTCAGCGATGTCAATCAGCGGCTCTTCCATCCTGCCACCGGGATCGCCT
TAGTTTGTGTATCGGGAGATGCGCCCTATGCAGCGGACAAAATCCTCAAC
AGCTTTTTGCTCAAGCTGCAGGCCGCAGATGCTAGTTCTGAGCAGCGGAT
CAAGATCTATTACATAGTTAGCCAAGTCTATAAGCTATCTGCGTTGCGTG
GCTCTCTCCAGAAATTGGACACCACGATACGCGAGTCTGTGCAGGACGAT
GTAATCGCCTCCCTACGCCTAATTGAACAGGAAGAGTTCGATGCCAAGAA
GGAGGACTTGGAGTTGCAGAAGGCGGCCCTTTCGGTGCTTAACGAAAGTG
CTCCTCTTCTCAACGAGAAACAACGCGCTTTAATTTACAAAGCTCTGGTT
CAGCTTGTCAGCCATCCGTCCATCGACATCGATTTCACCACACTGACGGT
TAGCCTTGGAGCCCTGCAACCGGTGGAGGTGCAGTCAAATTTCATTGATG
TTTGCGTGCGAAATTTCGAGATTTTCTCCACATTTGTCAAACGAAAGATA
TACACAAATTTATTGCCGCTCATGCCTCAAATAGCGTTCACTCAACGCAT
TCTAGATTTGGTTATGACACAGACGTTTAACGATACTACTGCAGAGCCCG
TCCGTTTATTGGCTCTGGAAGCATTAAACAAACTGCTCCTGCTAGCGGAT
CAGCGCTTTATCGTGGACGTGCAGCAGGAGTCCAATCTTCTTCACAAGCT
CATCGAACTGGGCCAGAAGACCGAGGGTCTGTCTATGCAGTCGCTAGAAC
AGATTGCGGGCGCTTTAAGTCGTATCACGCAACAGCTCCCGCTCTCCGAA
CAAAGCGCTATAGTAAGCGAGTATCTTCCTGGACTCAATCTGAGTCAATC
GGCTGATTTGTACATTACCAAGGGCCTGCTGGGCTACCTTCATAAAGACA
TAACCCTGGATGACCACTTCGAGCGGCTTCTGACCGATTTGACGCAGCTT
TCGCTTAATTCGGACAACGAACAGTTGCGTGTAATCGCTCACCACCTGCT
CTGTAGCATGGTCAACAAGATGGAGTCGAACCCAGCTAATCTAAGGAAGG
TCAAAAAAATCACGGAGCAACTGAAGGTGGCTATTAAAAAGGGCGATGTT
CGGGCGGTGGAGATCCTTGCATGGGTGGGGAAGGGCCTAGTAGTCGCAGG
ATTCGATGAGGCTGCCGATGTTGTTGGTGATCTCTCGGATCTACTAAAAC
ATCCCAGTTTGAGCACTGCCGCTGCCTTGGGATTCGACATCATTGCCGCC
GAGTACCCAGAATTGGATTTGCCTGTCGTTAAATTCCTCTACAAGCAGAA
GCTTTTCCACACTATCATGGGAAAAATGGGCAGCAAACTTGCCAACTACT
GTGTGCACCACTTGAAGGCTTTTGTCTACGTACTGAAAGCCACGCCACAG
GCGGTTATTAAGCTAAACATTGAGCAGCTCGGTCCGCTGCTTTTCAAGAG
CTTGGAGGAGCACAACGAGGCGCAGTCGCTGTGCATTGCATTGGGCATCT
GTGAAAAGTTTGTGGCGCAGCAGGACACGTATTTCCAAGGGCATTTGGCC
CACCTCATACCCAGCTGTCTGGAGCTGTCGAAATACAAGGCTCAGCATAC
CATGCAAGTGCGAATTGCGGCGCTGCAGCTGCTCTACGATGTGACAAAGT
ATCCTACCTTCGTCCTGTTGCCCCACAAAGTCGATGTTACTCTGGCCCTG
GCCGCCGCCTTGGATGATCCCAAGCGTCTGGTGCGGAACACAGCGGTGAA
GGCCAGGAATGCGTGGTACCTGGTCGGTGCGCCTAGTCCGAATTAGAAGC
TTTCTAGACCAT

BS07017.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-RB 2880 CG12005-PB 1..2880 17..2896 14400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-RB 3233 CG12005-RB 100..2979 17..2896 14400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5233792..5235238 835..2281 7235 100 Plus
3R 32079331 3R 5235306..5235728 2282..2704 2115 100 Plus
3R 32079331 3R 5232790..5233174 101..485 1925 100 Plus
3R 32079331 3R 5233384..5233734 485..835 1755 100 Plus
3R 32079331 3R 5235842..5236034 2704..2896 965 100 Plus
3R 32079331 3R 5232642..5232726 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:31:41 has no hits.

BS07017.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:30 Download gff for BS07017.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 1..2880 17..2896 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:09 Download gff for BS07017.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 97..2976 17..2896 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:50 Download gff for BS07017.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 100..2979 17..2896 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:31 Download gff for BS07017.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 97..2979 17..2899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:31 Download gff for BS07017.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 100..2979 17..2896 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:31 Download gff for BS07017.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5232642..5232726 17..101 100 -> Plus
3R 5232791..5233174 102..485 100 -> Plus
3R 5233385..5233734 486..835 100 -> Plus
3R 5233793..5235238 836..2281 100 -> Plus
3R 5235306..5235728 2282..2704 100 -> Plus
3R 5235843..5236034 2705..2896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:50 Download gff for BS07017.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1058364..1058448 17..101 100 -> Plus
arm_3R 1058513..1058896 102..485 100 -> Plus
arm_3R 1059107..1059456 486..835 100 -> Plus
arm_3R 1059515..1060960 836..2281 100 -> Plus
arm_3R 1061028..1061450 2282..2704 100 -> Plus
arm_3R 1061565..1061756 2705..2896 100   Plus

BS07017.pep Sequence

Translation from 16 to 2895

> BS07017.pep
MTTPTRATLEKALKSDQKLVNSATQIAKDLTAKAYDISALAEALGFALSS
PDMEERVAGTNLLSAVLIALPQDLLQERQLEFLSTFYMDRLRDHHNVMPA
IIDGIDALVHMKALPRAQIPQILQSFFEHTTCQSQTRSDRTKLFHIFQYL
TENFQDELQAMAGDFVYGLINSIDGERDPRNLDIIFSFMPEFLSTYPLLH
LAEEMFEIFACYFPIDFNPSKQDPAAITRDELSKKLTNCLVANNEFAEGT
VVLAIEKLESELLVAKLDSIELLHQAAVKFPPSVLEPHFDQIWQALKTET
FPGNDNEEILKASLKALSALLERAAHIPDISHSYQSSILGVILPHLSDVN
QRLFHPATGIALVCVSGDAPYAADKILNSFLLKLQAADASSEQRIKIYYI
VSQVYKLSALRGSLQKLDTTIRESVQDDVIASLRLIEQEEFDAKKEDLEL
QKAALSVLNESAPLLNEKQRALIYKALVQLVSHPSIDIDFTTLTVSLGAL
QPVEVQSNFIDVCVRNFEIFSTFVKRKIYTNLLPLMPQIAFTQRILDLVM
TQTFNDTTAEPVRLLALEALNKLLLLADQRFIVDVQQESNLLHKLIELGQ
KTEGLSMQSLEQIAGALSRITQQLPLSEQSAIVSEYLPGLNLSQSADLYI
TKGLLGYLHKDITLDDHFERLLTDLTQLSLNSDNEQLRVIAHHLLCSMVN
KMESNPANLRKVKKITEQLKVAIKKGDVRAVEILAWVGKGLVVAGFDEAA
DVVGDLSDLLKHPSLSTAAALGFDIIAAEYPELDLPVVKFLYKQKLFHTI
MGKMGSKLANYCVHHLKAFVYVLKATPQAVIKLNIEQLGPLLFKSLEEHN
EAQSLCIALGICEKFVAQQDTYFQGHLAHLIPSCLELSKYKAQHTMQVRI
AALQLLYDVTKYPTFVLLPHKVDVTLALAAALDDPKRLVRNTAVKARNAW
YLVGAPSPN*

BS07017.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-PB 959 CG12005-PB 1..959 1..959 4803 100 Plus