Clone Sequence Records
BS07018.3prime Sequence
880 bp (767 high quality bases) assembled on 2006-01-06
> BS07018.3prime
ATGGTCTAGAAAGCTTCTAGACAACGGTGAATACTGCACCCAAGGCGTAG
TGATCCGACCCCAGACGGTAATTGGGGATCTGTCCCGCCCCGATGCACCG
GTTGATTGAGGGCAGTGAGTAGACGCTGAGAGGCAAGAGCTTGTGCCTGC
TCCGCGATCCTAGCGAGCGCAGGATGTAGTCCACGATAACCCATTCGTTC
TGGTATGTGGAGGCAGTACCTTCGCCCGAATCGATGATCTCGAAATGCAG
GGGTTCTGGGCAAGCTGTGGAATCCACATCCCCATTCTTGCCAACGAGGA
ATTCAATAGGCGAGGAGTCGGGCAGACTGTTAAAGTCACCAGTCAGGACG
ATAGGTGTGTCGGTGGAGAACGACTGCAGCTCCTCCAAAATTCTTTCCAC
CTGGGCGCAACGGACATCGCTCCGTTTCGTGTTGAACAGCAAGTGCGTGG
TGGCGACCACGAATTCCTTCTGCTGCTCCTGCTGCTTTTTGAATCGGAAC
CTGGCAAACAAGGCCACATTGTCGCGATTGAGTAGAGCCACCGCCTGGTC
GTACAGCTCCACTGCTTGGTGGTCTAGCAACTCAAACTTTGAGGAGTCGT
AGACAATAGCGCATCCGTCCGTTCGACAGCCGGTCTTCTTTTTGTACACA
TAAGCCAACTTCTTGCCGTTGCCCATACGCAGTCGTTGGACGAGCACTGG
AAGGTGGTCGAACTGCATCTCCTGCAGGCACAGTATGTCCGGATCCAGTT
TGAGCAGTTCCCTGAGAAGGTTCTGCTGGCGGCGTTGCCAGCTGAGGAAC
TCATGCGGGATTCCCACGTACAGGAAGAGGTGCTCCAGAAGCAGATCCTG
GGCCAGGATGTTATATGAGACAACCTTGAA
BS07018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12273-PA | 1065 | angel-RA | 202..1065 | 880..17 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-RA | 1230 | CG12273-RA | 317..1180 | 880..17 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23694319..23695182 | 880..17 | 4320 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 12:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3273..3422 | 718..558 | 120 | 58.4 | Minus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5557..5620 | 718..655 | 113 | 64.1 | Minus |
BS07018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:19 Download gff for
BS07018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-PA | 204..1065 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:39 Download gff for
BS07018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12273-PA | 204..1065 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:48:21 Download gff for
BS07018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 317..1185 | 10..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:59 Download gff for
BS07018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 317..1185 | 10..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:59 Download gff for
BS07018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23694319..23695187 | 10..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:48:21 Download gff for
BS07018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19581842..19582710 | 10..880 | 99 | | Minus |
BS07018.5prime Sequence
901 bp (837 high quality bases) assembled on 2006-01-06
> BS07018.5prime
GAAGTTATCAGTCGACATGTACAGGTCTCTGCTGCACAACGTTTCACTCA
AGGCGACATCAAGGATTATCAGGCGCAGCGTGAGCAGCCAGGCAAAAGGA
GCCAGCGGAAAGCGCAAACAAAAAGCGAAGGAGATGGAGTCGAGCCACGA
TCGGAATAGACGCTGGACGTCATTGGGGAATCAGGCTGAGGGTCGAGACC
CGCACAAGTGCTCCTCCTTCAAGGTTGTCTCATATAACATCCTGGCCCAG
GATCTGCTTCTGGAGCACCTCTTCCTGTACGTGGGAATCCCGCATGAGTT
CCTCAGCTGGCAACGCCGCCAGCAGAACCTTCTCAGGGAACTGCTCAAAC
TGGATCCGGACATACTGTGCCTGCAGGAGATGCAGTTCGACCACCTTCCA
GTGCTCGTCCAACGACTGCGTATGGGCAACGGCAAGAAGTTGGCTTATGT
GTACAAAAAGAAGACCGGCTGTCGAACGGACGGATGCGCTATTGTCTACG
ACTCCTCAAAGTTTGAGTTGCTAGACCACCAAGCAGTGGAGCTGTACGAC
CAGGCGGTGGCTCTACTCAATCGCGACAATGTGGCCTTGTTTGCCAGGTT
CCGATTCAAAAAGCAGCAGGAGCAGCAGAAGGAATTCGTGGTCGCCACCA
CGCACTTGCTGTTCAACACGAAACGGAGCGATGTCCGTTGCGCCCAGGTG
GAAAGAATTTTGGAGGAGCTGCAGTCGTTCTCCACCGACACACCTATCGT
CCTGACTGGTGACTTTAACAGTCTGCCCGACTCCTCGCCTATTGAATTCC
TCGTTGGCAAGAATGGGGATGTGGATTCCACAGCTTGCCCAGAACCCCTG
CATTTCGAGATCATCGATTCGGGCGAAGGTACTGCCTCCACATACCAGAA
C
BS07018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12273-PA | 1065 | angel-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-RA | 1230 | CG12273-RA | 116..1000 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23694118..23695002 | 17..901 | 4425 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3273..3422 | 380..540 | 120 | 58.4 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5557..5620 | 380..443 | 113 | 64.1 | Plus |
BS07018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:20 Download gff for
BS07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:41 Download gff for
BS07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12273-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:07:34 Download gff for
BS07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 111..1000 | 11..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:38 Download gff for
BS07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 111..1000 | 11..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:38 Download gff for
BS07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23694113..23695002 | 11..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:07:34 Download gff for
BS07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19581636..19582525 | 11..901 | 99 | | Plus |
BS07018.complete Sequence
1097 bp (1097 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635690
> BS07018.complete
GAAGTTATCAGTCGACATGTACAGGTCTCTGCTGCACAACGTTTCACTCA
AGGCGACATCAAGGATTATCAGGCGCAGCGTGAGCAGCCAGGCAAAAGGA
GCCAGCGGAAAGCGCAAACAAAAAGCGAAGGAGATGGAGTCGAGCCACGA
TCGGAATAGACGCTGGACGTCATTGGGGAATCAGGCTGAGGGTCGAGACC
CGCACAAGTGCTCCTCCTTCAAGGTTGTCTCATATAACATCCTGGCCCAG
GATCTGCTTCTGGAGCACCTCTTCCTGTACGTGGGAATCCCGCATGAGTT
CCTCAGCTGGCAACGCCGCCAGCAGAACCTTCTCAGGGAACTGCTCAAAC
TGGATCCGGACATACTGTGCCTGCAGGAGATGCAGTTCGACCACCTTCCA
GTGCTCGTCCAACGACTGCGTATGGGCAACGGCAAGAAGTTGGCTTATGT
GTACAAAAAGAAGACCGGCTGTCGAACGGACGGATGCGCTATTGTCTACG
ACTCCTCAAAGTTTGAGTTGCTAGACCACCAAGCAGTGGAGCTGTACGAC
CAGGCGGTGGCTCTACTCAATCGCGACAATGTGGCCTTGTTTGCCAGGTT
CCGATTCAAAAAGCAGCAGGAGCAGCAGAAGGAATTCGTGGTCGCCACCA
CGCACTTGCTGTTCAACACGAAACGGAGCGATGTCCGTTGCGCCCAGGTG
GAAAGAATTTTGGAGGAGCTGCAGTCGTTCTCCACCGACACACCTATCGT
CCTGACTGGTGACTTTAACAGTCTGCCCGACTCCTCGCCTATTGAATTCC
TCGTTGGCAAGAATGGGGATGTGGATTCCACAGCTTGCCCAGAACCCCTG
CATTTCGAGATCATCGATTCGGGCGAAGGTACTGCCTCCACATACCAGAA
CGAATGGGTTATCGTGGACTACATCCTGCGCTCGCTAGGATCGCGGAGCA
GGCACAAGCTCTTGCCTCTCAGCGTCTACTCACTGCCCTCAATCAACCGG
TGCATCGGGGCGGGACAGATCCCCAATTACCGTCTGGGGTCGGATCACTA
CGCCTTGGGTGCAGTATTCACCGTTGTCTAGAAGCTTTCTAGACCAT
BS07018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-RA | 1065 | CG12273-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-RA | 1230 | CG12273-RA | 116..1180 | 17..1081 | 5325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23694118..23695182 | 17..1081 | 5325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3273..3422 | 380..540 | 120 | 58.4 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5557..5620 | 380..443 | 113 | 64.1 | Plus |
BS07018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:20 Download gff for
BS07018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 1..1065 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:56 Download gff for
BS07018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 116..1190 | 11..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:21 Download gff for
BS07018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 116..1180 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:20 Download gff for
BS07018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 116..1190 | 11..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:59 Download gff for
BS07018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 116..1180 | 17..1081 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:59 Download gff for
BS07018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23694118..23695182 | 17..1081 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:21 Download gff for
BS07018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19581641..19582705 | 17..1081 | 100 | | Plus |
BS07018.pep Sequence
Translation from 16 to 1080
> BS07018.pep
MYRSLLHNVSLKATSRIIRRSVSSQAKGASGKRKQKAKEMESSHDRNRRW
TSLGNQAEGRDPHKCSSFKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQR
RQQNLLRELLKLDPDILCLQEMQFDHLPVLVQRLRMGNGKKLAYVYKKKT
GCRTDGCAIVYDSSKFELLDHQAVELYDQAVALLNRDNVALFARFRFKKQ
QEQQKEFVVATTHLLFNTKRSDVRCAQVERILEELQSFSTDTPIVLTGDF
NSLPDSSPIEFLVGKNGDVDSTACPEPLHFEIIDSGEGTASTYQNEWVIV
DYILRSLGSRSRHKLLPLSVYSLPSINRCIGAGQIPNYRLGSDHYALGAV
FTVV*
BS07018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-PA | 354 | CG12273-PA | 1..354 | 1..354 | 1828 | 100 | Plus |
| cu-PH | 419 | CG31299-PH | 82..387 | 62..354 | 209 | 26.3 | Plus |
| cu-PF | 441 | CG31299-PF | 104..409 | 62..354 | 209 | 26.3 | Plus |
| cu-PE | 446 | CG31299-PE | 109..414 | 62..354 | 209 | 26.3 | Plus |
| cu-PC | 449 | CG31299-PC | 112..417 | 62..354 | 209 | 26.3 | Plus |
