Clone BS07019 Report

Search the DGRC for BS07019

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptSyx17-RA
Protein status:BS07019.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07019.3prime Sequence

929 bp (842 high quality bases) assembled on 2006-01-06

> BS07019.3prime
ATGGTCTAGAAAGCTTTCATTCTGGCTTCTCTTTTAGCTCCAGTCTCTCA
GTTGACTCGCTATCCGGTTCCACCTGCTCCTCCTCGATGTTGCCATGCAT
TACATTGGGATTGGCCTTTAGCACAGAGCCACCGGTGAAGCCGAGGATGC
CACATCCTACTGCCGCCAATCCTCCAGCTTTCATGCCCGCCACCAGACCA
ATGGGTCCTCCCACACAGGTGCCCAGAAGAGCTCCGACTACGGGGTACAT
GGCCTTCTTGTAGGTGAGCGCCCGGCGCAGATTCAATTCGCCCTGCTGGA
CATTCTCCAGAGCTTCCTCCGCATTGTCTGCTATCTTTTCCACCGCCACT
GATTGCTCTGCAGTCAGTTGACGCATTCCCTGGAACATCCCGTGCAGATC
GTAGATCTCCTGTTGCAGGTTCTCCATCTGATCCAGGCAGGCTTGCCTCT
GCGCCAATTGGTGTTCCTCCAGCTGGAAATTGAGTTGCAGCTGGGGCATG
TGGCGGTGTGCGGGTAGACTGTTCATATCCACCTCCTGTGGCTGATTGTC
CAGATCGTCGTCGTACTGAGAACTCAAAGTGGAGGTGGGTGATTTGAGTT
GGAGCTCCGCAAATTCCTTCATGCCAGCGAAGGCAGTATCCCTGCCAGGT
TTCATTAGGTCGTCGAAACGTTCCAGATCCTCCTCCCGTACTTTTTCTCG
CAGTGCATCCATTTCCAGAAGTAGATTCTTGATCTGCTTAATGACCCTCA
TAGCATTGAGTTCCTCCTTTTTGATTTTTTGCCAGTCGCCGAGCGCCAGG
CTTTTTTCTATATTGCTGCGATGGTTTTTCAGTAGGCTCAGATGGTGGGG
CACCGCCACATCCTGAAACCTTTGGATGGAGACCTCCGCCTGTTTAAGTG
GCAGTTTCTCATCGCGCGTCATGTCGACT

BS07019.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7452-PA 906 Syx17-RA 1..906 922..17 4530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
Syx17-RB 1566 CG7452-RB 341..1246 922..17 4530 100 Minus
Syx17-RA 1566 CG7452-RA 341..1246 922..17 4530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4404258..4404848 607..17 2955 100 Minus
3L 28110227 3L 4403950..4404197 854..607 1240 100 Minus
3L 28110227 3L 4403827..4403897 922..852 355 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:14:17 has no hits.

BS07019.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:21 Download gff for BS07019.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx17-PA 1..906 17..922 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:42 Download gff for BS07019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7452-PA 1..906 17..922 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:22:10 Download gff for BS07019.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx17-RA 333..1246 17..929 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:49:58 Download gff for BS07019.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx17-RA 333..1246 17..929 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:49:58 Download gff for BS07019.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4403819..4403895 854..929 96 -> Minus
3L 4403951..4404197 607..853 100 -> Minus
3L 4404259..4404848 17..606 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:22:10 Download gff for BS07019.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4403819..4403895 854..929 96 -> Minus
arm_3L 4403951..4404197 607..853 100 -> Minus
arm_3L 4404259..4404848 17..606 100   Minus

BS07019.5prime Sequence

854 bp (818 high quality bases) assembled on 2006-01-06

> BS07019.5prime
GAAGTTATCAGTCGACATGACGCGCGATGAGAAACTGCCACTTAAACAGG
CGGAGGTCTCCATCCAAAGGTTTCAGGATGTGGCGGTGCCCCACCATCTG
AGCCTACTGAAAAACCATCGCAGCAATATAGAAAAAAGCCTGGCGCTCGG
CGACTGGCAAAAAATCAAAAAGGAGGAACTCAATGCTATGAGGGTCATTA
AGCAGATCAAGAATCTACTTCTGGAAATGGATGCACTGCGAGAAAAAGTA
CGGGAGGAGGATCTGGAACGTTTCGACGACCTAATGAAACCTGGCAGGGA
TACTGCCTTCGCTGGCATGAAGGAATTTGCGGAGCTCCAACTCAAATCAC
CCACCTCCACTTTGAGTTCTCAGTACGACGACGATCTGGACAATCAGCCA
CAGGAGGTGGATATGAACAGTCTACCCGCACACCGCCACATGCCCCAGCT
GCAACTCAATTTCCAGCTGGAGGAACACCAATTGGCGCAGAGGCAAGCCT
GCCTGGATCAGATGGAGAACCTGCAACAGGAGATCTACGATCTGCACGGG
ATGTTCCAGGGAATGCGTCAACTGACTGCAGAGCAATCAGTGGCGGTGGA
AAAGATAGCAGACAATGCGGAGGAAGCTCTGGAGAATGTCCAGCAGGGCG
AATTGAATCTGCGCCGGGCGCTCACCTACAAGAAGGCCATGTACCCCGTA
GTCGGAGCTCTTCTGGGCACCTGTGTGGGAGGACCCATTGGTCTGGTGGC
GGGCATGAAAGCTGGAGGATTGGCGGCAGTAGGATGTGGCATCCTCGGCT
TCACCGGTGGCTCTGTGCTAAAGGCCAATCCCAATGTAATGCATGGCAAC
ATCG

BS07019.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7452-PA 906 Syx17-RA 1..838 17..854 4190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Syx17-RB 1566 CG7452-RB 341..1178 17..854 4190 100 Plus
Syx17-RA 1566 CG7452-RA 341..1178 17..854 4190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4404258..4404780 332..854 2615 100 Plus
3L 28110227 3L 4403950..4404197 85..332 1240 100 Plus
3L 28110227 3L 4403827..4403897 17..87 355 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:33:32 has no hits.

BS07019.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:22 Download gff for BS07019.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx17-PA 1..838 17..854 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:43 Download gff for BS07019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7452-PA 1..838 17..854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:01:31 Download gff for BS07019.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx17-RA 325..1178 2..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:51 Download gff for BS07019.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx17-RA 325..1178 2..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:51 Download gff for BS07019.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4403811..4403895 2..85 94 -> Plus
3L 4403951..4404197 86..332 100 -> Plus
3L 4404259..4404780 333..854 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:01:31 Download gff for BS07019.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4403811..4403895 2..85 94 -> Plus
arm_3L 4403951..4404197 86..332 100 -> Plus
arm_3L 4404259..4404780 333..854 100   Plus

BS07019.complete Sequence

938 bp (938 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635691

> BS07019.complete
GAAGTTATCAGTCGACATGACGCGCGATGAGAAACTGCCACTTAAACAGG
CGGAGGTCTCCATCCAAAGGTTTCAGGATGTGGCGGTGCCCCACCATCTG
AGCCTACTGAAAAACCATCGCAGCAATATAGAAAAAAGCCTGGCGCTCGG
CGACTGGCAAAAAATCAAAAAGGAGGAACTCAATGCTATGAGGGTCATTA
AGCAGATCAAGAATCTACTTCTGGAAATGGATGCACTGCGAGAAAAAGTA
CGGGAGGAGGATCTGGAACGTTTCGACGACCTAATGAAACCTGGCAGGGA
TACTGCCTTCGCTGGCATGAAGGAATTTGCGGAGCTCCAACTCAAATCAC
CCACCTCCACTTTGAGTTCTCAGTACGACGACGATCTGGACAATCAGCCA
CAGGAGGTGGATATGAACAGTCTACCCGCACACCGCCACATGCCCCAGCT
GCAACTCAATTTCCAGCTGGAGGAACACCAATTGGCGCAGAGGCAAGCCT
GCCTGGATCAGATGGAGAACCTGCAACAGGAGATCTACGATCTGCACGGG
ATGTTCCAGGGAATGCGTCAACTGACTGCAGAGCAATCAGTGGCGGTGGA
AAAGATAGCAGACAATGCGGAGGAAGCTCTGGAGAATGTCCAGCAGGGCG
AATTGAATCTGCGCCGGGCGCTCACCTACAAGAAGGCCATGTACCCCGTA
GTCGGAGCTCTTCTGGGCACCTGTGTGGGAGGACCCATTGGTCTGGTGGC
GGGCATGAAAGCTGGAGGATTGGCGGCAGTAGGATGTGGCATCCTCGGCT
TCACCGGTGGCTCTGTGCTAAAGGCCAATCCCAATGTAATGCATGGCAAC
ATCGAGGAGGAGCAGGTGGAACCGGATAGCGAGTCAACTGAGAGACTGGA
GCTAAAAGAGAAGCCAGAATGAAAGCTTTCTAGACCAT

BS07019.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
Syx17-RB 1041 CG7452-PB 1..906 17..922 4530 100 Plus
Syx17-RA 906 CG7452-PA 1..906 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Syx17-RB 1566 CG7452-RB 341..1246 17..922 4530 100 Plus
Syx17-RA 1566 CG7452-RA 341..1246 17..922 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4404258..4404848 332..922 2955 100 Plus
3L 28110227 3L 4403950..4404197 85..332 1240 100 Plus
3L 28110227 3L 4403827..4403897 17..87 355 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:47:11 has no hits.

BS07019.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:07 Download gff for BS07019.complete
Subject Subject Range Query Range Percent Splice Strand
Syx17-RA 1..906 17..922 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:22 Download gff for BS07019.complete
Subject Subject Range Query Range Percent Splice Strand
Syx17-RA 312..1233 2..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:41 Download gff for BS07019.complete
Subject Subject Range Query Range Percent Splice Strand
Syx17-RA 341..1245 17..921 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:07 Download gff for BS07019.complete
Subject Subject Range Query Range Percent Splice Strand
Syx17-RA 312..1233 2..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:25 Download gff for BS07019.complete
Subject Subject Range Query Range Percent Splice Strand
Syx17-RA 341..1245 17..921 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:25 Download gff for BS07019.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4403827..4403895 17..85 100 -> Plus
3L 4403951..4404197 86..332 100 -> Plus
3L 4404259..4404847 333..921 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:41 Download gff for BS07019.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4403827..4403895 17..85 100 -> Plus
arm_3L 4403951..4404197 86..332 100 -> Plus
arm_3L 4404259..4404847 333..921 100   Plus

BS07019.pep Sequence

Translation from 16 to 921

> BS07019.pep
MTRDEKLPLKQAEVSIQRFQDVAVPHHLSLLKNHRSNIEKSLALGDWQKI
KKEELNAMRVIKQIKNLLLEMDALREKVREEDLERFDDLMKPGRDTAFAG
MKEFAELQLKSPTSTLSSQYDDDLDNQPQEVDMNSLPAHRHMPQLQLNFQ
LEEHQLAQRQACLDQMENLQQEIYDLHGMFQGMRQLTAEQSVAVEKIADN
AEEALENVQQGELNLRRALTYKKAMYPVVGALLGTCVGGPIGLVAGMKAG
GLAAVGCGILGFTGGSVLKANPNVMHGNIEEEQVEPDSESTERLELKEKP
E*

BS07019.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Syx17-PA 301 CG7452-PA 1..301 1..301 1534 100 Plus
Syx17-PB 346 CG7452-PB 1..301 1..301 1534 100 Plus