Clone Sequence Records
BS07019.3prime Sequence
929 bp (842 high quality bases) assembled on 2006-01-06
> BS07019.3prime
ATGGTCTAGAAAGCTTTCATTCTGGCTTCTCTTTTAGCTCCAGTCTCTCA
GTTGACTCGCTATCCGGTTCCACCTGCTCCTCCTCGATGTTGCCATGCAT
TACATTGGGATTGGCCTTTAGCACAGAGCCACCGGTGAAGCCGAGGATGC
CACATCCTACTGCCGCCAATCCTCCAGCTTTCATGCCCGCCACCAGACCA
ATGGGTCCTCCCACACAGGTGCCCAGAAGAGCTCCGACTACGGGGTACAT
GGCCTTCTTGTAGGTGAGCGCCCGGCGCAGATTCAATTCGCCCTGCTGGA
CATTCTCCAGAGCTTCCTCCGCATTGTCTGCTATCTTTTCCACCGCCACT
GATTGCTCTGCAGTCAGTTGACGCATTCCCTGGAACATCCCGTGCAGATC
GTAGATCTCCTGTTGCAGGTTCTCCATCTGATCCAGGCAGGCTTGCCTCT
GCGCCAATTGGTGTTCCTCCAGCTGGAAATTGAGTTGCAGCTGGGGCATG
TGGCGGTGTGCGGGTAGACTGTTCATATCCACCTCCTGTGGCTGATTGTC
CAGATCGTCGTCGTACTGAGAACTCAAAGTGGAGGTGGGTGATTTGAGTT
GGAGCTCCGCAAATTCCTTCATGCCAGCGAAGGCAGTATCCCTGCCAGGT
TTCATTAGGTCGTCGAAACGTTCCAGATCCTCCTCCCGTACTTTTTCTCG
CAGTGCATCCATTTCCAGAAGTAGATTCTTGATCTGCTTAATGACCCTCA
TAGCATTGAGTTCCTCCTTTTTGATTTTTTGCCAGTCGCCGAGCGCCAGG
CTTTTTTCTATATTGCTGCGATGGTTTTTCAGTAGGCTCAGATGGTGGGG
CACCGCCACATCCTGAAACCTTTGGATGGAGACCTCCGCCTGTTTAAGTG
GCAGTTTCTCATCGCGCGTCATGTCGACT
BS07019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7452-PA | 906 | Syx17-RA | 1..906 | 922..17 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx17-RB | 1566 | CG7452-RB | 341..1246 | 922..17 | 4530 | 100 | Minus |
Syx17-RA | 1566 | CG7452-RA | 341..1246 | 922..17 | 4530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4404258..4404848 | 607..17 | 2955 | 100 | Minus |
3L | 28110227 | 3L | 4403950..4404197 | 854..607 | 1240 | 100 | Minus |
3L | 28110227 | 3L | 4403827..4403897 | 922..852 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:14:17 has no hits.
BS07019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:21 Download gff for
BS07019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-PA | 1..906 | 17..922 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:42 Download gff for
BS07019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7452-PA | 1..906 | 17..922 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:22:10 Download gff for
BS07019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 333..1246 | 17..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:49:58 Download gff for
BS07019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 333..1246 | 17..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:49:58 Download gff for
BS07019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4403819..4403895 | 854..929 | 96 | -> | Minus |
3L | 4403951..4404197 | 607..853 | 100 | -> | Minus |
3L | 4404259..4404848 | 17..606 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:22:10 Download gff for
BS07019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4403819..4403895 | 854..929 | 96 | -> | Minus |
arm_3L | 4403951..4404197 | 607..853 | 100 | -> | Minus |
arm_3L | 4404259..4404848 | 17..606 | 100 | | Minus |
BS07019.5prime Sequence
854 bp (818 high quality bases) assembled on 2006-01-06
> BS07019.5prime
GAAGTTATCAGTCGACATGACGCGCGATGAGAAACTGCCACTTAAACAGG
CGGAGGTCTCCATCCAAAGGTTTCAGGATGTGGCGGTGCCCCACCATCTG
AGCCTACTGAAAAACCATCGCAGCAATATAGAAAAAAGCCTGGCGCTCGG
CGACTGGCAAAAAATCAAAAAGGAGGAACTCAATGCTATGAGGGTCATTA
AGCAGATCAAGAATCTACTTCTGGAAATGGATGCACTGCGAGAAAAAGTA
CGGGAGGAGGATCTGGAACGTTTCGACGACCTAATGAAACCTGGCAGGGA
TACTGCCTTCGCTGGCATGAAGGAATTTGCGGAGCTCCAACTCAAATCAC
CCACCTCCACTTTGAGTTCTCAGTACGACGACGATCTGGACAATCAGCCA
CAGGAGGTGGATATGAACAGTCTACCCGCACACCGCCACATGCCCCAGCT
GCAACTCAATTTCCAGCTGGAGGAACACCAATTGGCGCAGAGGCAAGCCT
GCCTGGATCAGATGGAGAACCTGCAACAGGAGATCTACGATCTGCACGGG
ATGTTCCAGGGAATGCGTCAACTGACTGCAGAGCAATCAGTGGCGGTGGA
AAAGATAGCAGACAATGCGGAGGAAGCTCTGGAGAATGTCCAGCAGGGCG
AATTGAATCTGCGCCGGGCGCTCACCTACAAGAAGGCCATGTACCCCGTA
GTCGGAGCTCTTCTGGGCACCTGTGTGGGAGGACCCATTGGTCTGGTGGC
GGGCATGAAAGCTGGAGGATTGGCGGCAGTAGGATGTGGCATCCTCGGCT
TCACCGGTGGCTCTGTGCTAAAGGCCAATCCCAATGTAATGCATGGCAAC
ATCG
BS07019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7452-PA | 906 | Syx17-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx17-RB | 1566 | CG7452-RB | 341..1178 | 17..854 | 4190 | 100 | Plus |
Syx17-RA | 1566 | CG7452-RA | 341..1178 | 17..854 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4404258..4404780 | 332..854 | 2615 | 100 | Plus |
3L | 28110227 | 3L | 4403950..4404197 | 85..332 | 1240 | 100 | Plus |
3L | 28110227 | 3L | 4403827..4403897 | 17..87 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:33:32 has no hits.
BS07019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:22 Download gff for
BS07019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:43 Download gff for
BS07019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7452-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:01:31 Download gff for
BS07019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 325..1178 | 2..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:51 Download gff for
BS07019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 325..1178 | 2..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:51 Download gff for
BS07019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4403811..4403895 | 2..85 | 94 | -> | Plus |
3L | 4403951..4404197 | 86..332 | 100 | -> | Plus |
3L | 4404259..4404780 | 333..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:01:31 Download gff for
BS07019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4403811..4403895 | 2..85 | 94 | -> | Plus |
arm_3L | 4403951..4404197 | 86..332 | 100 | -> | Plus |
arm_3L | 4404259..4404780 | 333..854 | 100 | | Plus |
BS07019.complete Sequence
938 bp (938 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635691
> BS07019.complete
GAAGTTATCAGTCGACATGACGCGCGATGAGAAACTGCCACTTAAACAGG
CGGAGGTCTCCATCCAAAGGTTTCAGGATGTGGCGGTGCCCCACCATCTG
AGCCTACTGAAAAACCATCGCAGCAATATAGAAAAAAGCCTGGCGCTCGG
CGACTGGCAAAAAATCAAAAAGGAGGAACTCAATGCTATGAGGGTCATTA
AGCAGATCAAGAATCTACTTCTGGAAATGGATGCACTGCGAGAAAAAGTA
CGGGAGGAGGATCTGGAACGTTTCGACGACCTAATGAAACCTGGCAGGGA
TACTGCCTTCGCTGGCATGAAGGAATTTGCGGAGCTCCAACTCAAATCAC
CCACCTCCACTTTGAGTTCTCAGTACGACGACGATCTGGACAATCAGCCA
CAGGAGGTGGATATGAACAGTCTACCCGCACACCGCCACATGCCCCAGCT
GCAACTCAATTTCCAGCTGGAGGAACACCAATTGGCGCAGAGGCAAGCCT
GCCTGGATCAGATGGAGAACCTGCAACAGGAGATCTACGATCTGCACGGG
ATGTTCCAGGGAATGCGTCAACTGACTGCAGAGCAATCAGTGGCGGTGGA
AAAGATAGCAGACAATGCGGAGGAAGCTCTGGAGAATGTCCAGCAGGGCG
AATTGAATCTGCGCCGGGCGCTCACCTACAAGAAGGCCATGTACCCCGTA
GTCGGAGCTCTTCTGGGCACCTGTGTGGGAGGACCCATTGGTCTGGTGGC
GGGCATGAAAGCTGGAGGATTGGCGGCAGTAGGATGTGGCATCCTCGGCT
TCACCGGTGGCTCTGTGCTAAAGGCCAATCCCAATGTAATGCATGGCAAC
ATCGAGGAGGAGCAGGTGGAACCGGATAGCGAGTCAACTGAGAGACTGGA
GCTAAAAGAGAAGCCAGAATGAAAGCTTTCTAGACCAT
BS07019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx17-RB | 1041 | CG7452-PB | 1..906 | 17..922 | 4530 | 100 | Plus |
Syx17-RA | 906 | CG7452-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx17-RB | 1566 | CG7452-RB | 341..1246 | 17..922 | 4530 | 100 | Plus |
Syx17-RA | 1566 | CG7452-RA | 341..1246 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4404258..4404848 | 332..922 | 2955 | 100 | Plus |
3L | 28110227 | 3L | 4403950..4404197 | 85..332 | 1240 | 100 | Plus |
3L | 28110227 | 3L | 4403827..4403897 | 17..87 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:47:11 has no hits.
BS07019.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:07 Download gff for
BS07019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:22 Download gff for
BS07019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 312..1233 | 2..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:41 Download gff for
BS07019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 341..1245 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:07 Download gff for
BS07019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 312..1233 | 2..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:25 Download gff for
BS07019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 341..1245 | 17..921 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:25 Download gff for
BS07019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4403827..4403895 | 17..85 | 100 | -> | Plus |
3L | 4403951..4404197 | 86..332 | 100 | -> | Plus |
3L | 4404259..4404847 | 333..921 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:41 Download gff for
BS07019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4403827..4403895 | 17..85 | 100 | -> | Plus |
arm_3L | 4403951..4404197 | 86..332 | 100 | -> | Plus |
arm_3L | 4404259..4404847 | 333..921 | 100 | | Plus |
BS07019.pep Sequence
Translation from 16 to 921
> BS07019.pep
MTRDEKLPLKQAEVSIQRFQDVAVPHHLSLLKNHRSNIEKSLALGDWQKI
KKEELNAMRVIKQIKNLLLEMDALREKVREEDLERFDDLMKPGRDTAFAG
MKEFAELQLKSPTSTLSSQYDDDLDNQPQEVDMNSLPAHRHMPQLQLNFQ
LEEHQLAQRQACLDQMENLQQEIYDLHGMFQGMRQLTAEQSVAVEKIADN
AEEALENVQQGELNLRRALTYKKAMYPVVGALLGTCVGGPIGLVAGMKAG
GLAAVGCGILGFTGGSVLKANPNVMHGNIEEEQVEPDSESTERLELKEKP
E*
BS07019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx17-PA | 301 | CG7452-PA | 1..301 | 1..301 | 1534 | 100 | Plus |
Syx17-PB | 346 | CG7452-PB | 1..301 | 1..301 | 1534 | 100 | Plus |