Clone Sequence Records
BS07022.3prime Sequence
914 bp (828 high quality bases) assembled on 2006-01-06
> BS07022.3prime
ATGGTCTAGAAAGCTTTTACAGCTTGGGCAGACCCGCCGAAATGGAGCTC
TCGATGCCGCAATGATCCTGGCCACGCAGGATGCGGAAGAAACCATGATC
GCCCCAATCGGTGTTCCACGAGTTACCAATTAGCCAGTACGGAATCTTCT
CCTCGCCCCAAACGCCCCAGCCCAAAATGCGAATGGCATGACCGCCCAGC
TCCTTGCCATGCTCGTGCTGATAGACACCGTCCTTGTACAGAATGAGATC
CTCATAAACGGTGAAGGCGCCCTCAACCGGTCCATTGGTCATGATCTCCT
CCTGAATTTCACGCACATTACGCCTCACCGAGTACGACTTGGAGCCGAAG
TGCTTGTCCTTGGCATAATCGACGGTGTAACCGCTCTGGCAGACGTGCGA
ACACTTGGGCGTTCTACCGCCATGGGCACATGGTGGTCGGGTTCCATTCA
CATGGTGCTCACAGGGAGAAATCTCGTAAGGACGGCAGCCCTGATTAGAT
CCGTAGGGTCCTCCGCTGACGATTCCCTTGCGCGTCCAGTAGCTCCAGGC
GGCGCCGGGGAAACCGCCATTGCAGCCAAATCCGCAGGTGTGGCAGCAGG
AGACGAGATCATCGGCCGAAAAGTGGAAATTCACCTTGCCGCCGGAATGG
ATGCACACGCGATCGGACATGGCTTCCACGGCACCAAAGGCCCAGCAGGA
GCCGCATGAACCCTGGTCGCGAATCTCGCCAATGGTTGGGCAGTTTGGCC
ATTGCTTGCGGGAATCGAACTCTTCGGGAAGTTCGTCAACGCTATTCACG
TATAGATCGCCAAGAACTTCACGCTTGTCGGGCAGTGCGAACTTGTGCGC
ATCCGGATGGACGCCCATCAAGCGGCGAATATGTCCCTCCGTTACGGATG
CATCGAAATTGCGA
BS07022.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10992-PA | 1023 | CG10992-RA | 126..1023 | 914..17 | 4465 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtsB1-RC | 1594 | CG10992-RC | 367..1265 | 914..16 | 4480 | 99.9 | Minus |
CtsB1-RA | 1425 | CG10992-RA | 367..1265 | 914..16 | 4480 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13780176..13780653 | 16..493 | 2390 | 100 | Plus |
X | 23542271 | X | 13781471..13781728 | 657..914 | 1275 | 99.6 | Plus |
X | 23542271 | X | 13781158..13781326 | 490..658 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:59:32 has no hits.
BS07022.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:28 Download gff for
BS07022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-PA | 127..1023 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:51 Download gff for
BS07022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-PA | 127..1023 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:09:12 Download gff for
BS07022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 277..1181 | 7..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:07 Download gff for
BS07022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 368..1272 | 7..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:07 Download gff for
BS07022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13780169..13780650 | 7..490 | 99 | <- | Plus |
X | 13781159..13781326 | 491..658 | 100 | <- | Plus |
X | 13781473..13781727 | 659..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:09:12 Download gff for
BS07022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13674202..13674683 | 7..490 | 99 | <- | Plus |
arm_X | 13675192..13675359 | 491..658 | 100 | <- | Plus |
arm_X | 13675506..13675760 | 659..913 | 99 | | Plus |
BS07022.5prime Sequence
907 bp (793 high quality bases) assembled on 2006-01-06
> BS07022.5prime
GAAGTTATCAGTCGACATGAATCTATTGCTCCTGGTGGCCACCGCGGCCT
CCGTGGCGGCACTCACGTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTC
ATCGAGGTGGTGCGCAGTAAGGCCAAAACCTGGACGGTGGGTCGCAATTT
CGATGCATCCGTAACGGAGGGACATATTCGCCGCCTGATGGGCGTCCATC
CGGATGCGCACAAGTTCGCACTGCCCGACAAGCGTGAAGTTCTTGGCGAT
CTATACGTGAATAGCGTTGACGAACTTCCCGAAGAGTTCGATTCCCGCAA
GCAATGGCCAAACTGCCCAACCATTGGCGAGATTCGCGACCAGGGTTCAT
GCGGCTCCTGCTGGGCCTTTGGTGCCGTGGAAGCCATGTCCGATCGCGTG
TGCATCCATTCCGGCGGCAAGGTGAATTTCCACTTTTCGGCCGATGATCT
CGTCTCCTGCTGCCACACCTGCGGATTTGGCTGCAATGGCGGTTTCCCCG
GCGCCGCCTGGAGCTACTGGACGCGCAAGGGAATCGTCAGCGGAGGACCC
TACGGATCTAATCAGGGCTGCCGTCCTTACGAGATTTCTCCCTGTGAGCA
CCATGTGAATGGAACCCGACCACCATGTGCCCATGGCGGTAGAACGCCCA
AGTGTTCGCACGTCTGCCAGAGCGGTTACACCGTCGATTATGCCAAGGAC
AAGCACTTCGGCTCCAAGTCGTACTCGGTGAGGCGTAATGTGCGTGAAAT
TCAGGAGGAGATCATGACCAATGGACCGGTTGAGGGCGCCTTCACCGTTT
ATGAGGATCTCATTCTGTACAAGGACGGTGTCTATCAGCACGAGCATGGC
AAGGAGCTGGGCGGTCATGCCATTCGCATTTTGGGGCTGGGGCGTTTGGG
GCGAGGA
BS07022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10992-PA | 1023 | CG10992-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtsB1-RC | 1594 | CG10992-RC | 242..1131 | 17..907 | 4430 | 99.9 | Plus |
CtsB1-RA | 1425 | CG10992-RA | 242..1131 | 17..907 | 4430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13780310..13780653 | 907..563 | 1675 | 99.7 | Minus |
X | 23542271 | X | 13781471..13781734 | 399..136 | 1320 | 100 | Minus |
X | 23542271 | X | 13781158..13781326 | 566..398 | 845 | 100 | Minus |
X | 23542271 | X | 13781808..13781929 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:57:00 has no hits.
BS07022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:29 Download gff for
BS07022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-PA | 1..889 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:52 Download gff for
BS07022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-PA | 1..889 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:25 Download gff for
BS07022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 151..1039 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:01 Download gff for
BS07022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 242..1130 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:01 Download gff for
BS07022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13780311..13780650 | 566..906 | 99 | <- | Minus |
X | 13781159..13781326 | 398..565 | 100 | <- | Minus |
X | 13781473..13781733 | 137..397 | 100 | <- | Minus |
X | 13781810..13781929 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:25 Download gff for
BS07022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13674344..13674683 | 566..906 | 99 | <- | Minus |
arm_X | 13675192..13675359 | 398..565 | 100 | <- | Minus |
arm_X | 13675506..13675766 | 137..397 | 100 | <- | Minus |
arm_X | 13675843..13675962 | 17..136 | 100 | | Minus |
BS07022.complete Sequence
1055 bp (1055 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635692
> BS07022.complete
GAAGTTATCAGTCGACATGAATCTATTGCTCCTGGTGGCCACCGCGGCCT
CCGTGGCGGCACTCACGTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTC
ATCGAGGTGGTGCGCAGTAAGGCCAAAACCTGGACGGTGGGTCGCAATTT
CGATGCATCCGTAACGGAGGGACATATTCGCCGCCTGATGGGCGTCCATC
CGGATGCGCACAAGTTCGCACTGCCCGACAAGCGTGAAGTTCTTGGCGAT
CTATACGTGAATAGCGTTGACGAACTTCCCGAAGAGTTCGATTCCCGCAA
GCAATGGCCAAACTGCCCAACCATTGGCGAGATTCGCGACCAGGGTTCAT
GCGGCTCCTGCTGGGCCTTTGGTGCCGTGGAAGCCATGTCCGATCGCGTG
TGCATCCATTCCGGCGGCAAGGTGAATTTCCACTTTTCGGCCGATGATCT
CGTCTCCTGCTGCCACACCTGCGGATTTGGCTGCAATGGCGGTTTCCCCG
GCGCCGCCTGGAGCTACTGGACGCGCAAGGGAATCGTCAGCGGAGGACCC
TACGGATCTAATCAGGGCTGCCGTCCTTACGAGATTTCTCCCTGTGAGCA
CCATGTGAATGGAACCCGACCACCATGTGCCCATGGCGGTAGAACGCCCA
AGTGTTCGCACGTCTGCCAGAGCGGTTACACCGTCGATTATGCCAAGGAC
AAGCACTTCGGCTCCAAGTCGTACTCGGTGAGGCGTAATGTGCGTGAAAT
TCAGGAGGAGATCATGACCAATGGACCGGTTGAGGGCGCCTTCACCGTTT
ATGAGGATCTCATTCTGTACAAGGACGGTGTCTATCAGCACGAGCATGGC
AAGGAGCTGGGCGGTCATGCCATTCGCATTTTGGGCTGGGGCGTTTGGGG
CGAGGAGAAGATTCCGTACTGGCTAATTGGTAACTCGTGGAACACCGATT
GGGGCGATCATGGTTTCTTCCGCATCCTGCGTGGCCAGGATCATTGCGGC
ATCGAGAGCTCCATTTCGGCGGGTCTGCCCAAGCTGTAAAAGCTTTCTAG
ACCAT
BS07022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtsB1-RC | 1023 | CG10992-PC | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CtsB1-RA | 1023 | CG10992-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtsB1-RC | 1594 | CG10992-RC | 242..1265 | 17..1040 | 5120 | 100 | Plus |
CtsB1-RA | 1425 | CG10992-RA | 242..1265 | 17..1040 | 5120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13780176..13780653 | 1040..563 | 2390 | 100 | Minus |
X | 23542271 | X | 13781471..13781734 | 399..136 | 1320 | 100 | Minus |
X | 23542271 | X | 13781158..13781326 | 566..398 | 845 | 100 | Minus |
X | 23542271 | X | 13781808..13781929 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:25:43 has no hits.
BS07022.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:07 Download gff for
BS07022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-RA | 1..1023 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:21 Download gff for
BS07022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-RA | 253..1283 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:41 Download gff for
BS07022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 151..1171 | 17..1037 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:07 Download gff for
BS07022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-RA | 253..1283 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:15 Download gff for
BS07022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 242..1262 | 17..1037 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:15 Download gff for
BS07022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13781473..13781733 | 137..397 | 100 | <- | Minus |
X | 13780179..13780650 | 566..1037 | 100 | <- | Minus |
X | 13781159..13781326 | 398..565 | 100 | <- | Minus |
X | 13781810..13781929 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:41 Download gff for
BS07022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13675192..13675359 | 398..565 | 100 | <- | Minus |
arm_X | 13674212..13674683 | 566..1037 | 100 | <- | Minus |
arm_X | 13675506..13675766 | 137..397 | 100 | <- | Minus |
arm_X | 13675843..13675962 | 17..136 | 100 | | Minus |
BS07022.pep Sequence
Translation from 16 to 1038
> BS07022.pep
MNLLLLVATAASVAALTSGEPSLLSDEFIEVVRSKAKTWTVGRNFDASVT
EGHIRRLMGVHPDAHKFALPDKREVLGDLYVNSVDELPEEFDSRKQWPNC
PTIGEIRDQGSCGSCWAFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCH
TCGFGCNGGFPGAAWSYWTRKGIVSGGPYGSNQGCRPYEISPCEHHVNGT
RPPCAHGGRTPKCSHVCQSGYTVDYAKDKHFGSKSYSVRRNVREIQEEIM
TNGPVEGAFTVYEDLILYKDGVYQHEHGKELGGHAIRILGWGVWGEEKIP
YWLIGNSWNTDWGDHGFFRILRGQDHCGIESSISAGLPKL*
BS07022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtsB1-PC | 340 | CG10992-PC | 1..340 | 1..340 | 1893 | 100 | Plus |
CtsB1-PA | 340 | CG10992-PA | 1..340 | 1..340 | 1893 | 100 | Plus |
Swim-PA | 431 | CG3074-PA | 182..420 | 82..338 | 366 | 35.2 | Plus |
Swim-PB | 431 | CG3074-PB | 182..420 | 82..338 | 366 | 35.2 | Plus |
CG12163-PB | 475 | CG12163-PB | 254..473 | 86..337 | 236 | 27.6 | Plus |