Clone BS07022 Report

Search the DGRC for BS07022

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCtsB1-RA
Protein status:BS07022.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07022.3prime Sequence

914 bp (828 high quality bases) assembled on 2006-01-06

> BS07022.3prime
ATGGTCTAGAAAGCTTTTACAGCTTGGGCAGACCCGCCGAAATGGAGCTC
TCGATGCCGCAATGATCCTGGCCACGCAGGATGCGGAAGAAACCATGATC
GCCCCAATCGGTGTTCCACGAGTTACCAATTAGCCAGTACGGAATCTTCT
CCTCGCCCCAAACGCCCCAGCCCAAAATGCGAATGGCATGACCGCCCAGC
TCCTTGCCATGCTCGTGCTGATAGACACCGTCCTTGTACAGAATGAGATC
CTCATAAACGGTGAAGGCGCCCTCAACCGGTCCATTGGTCATGATCTCCT
CCTGAATTTCACGCACATTACGCCTCACCGAGTACGACTTGGAGCCGAAG
TGCTTGTCCTTGGCATAATCGACGGTGTAACCGCTCTGGCAGACGTGCGA
ACACTTGGGCGTTCTACCGCCATGGGCACATGGTGGTCGGGTTCCATTCA
CATGGTGCTCACAGGGAGAAATCTCGTAAGGACGGCAGCCCTGATTAGAT
CCGTAGGGTCCTCCGCTGACGATTCCCTTGCGCGTCCAGTAGCTCCAGGC
GGCGCCGGGGAAACCGCCATTGCAGCCAAATCCGCAGGTGTGGCAGCAGG
AGACGAGATCATCGGCCGAAAAGTGGAAATTCACCTTGCCGCCGGAATGG
ATGCACACGCGATCGGACATGGCTTCCACGGCACCAAAGGCCCAGCAGGA
GCCGCATGAACCCTGGTCGCGAATCTCGCCAATGGTTGGGCAGTTTGGCC
ATTGCTTGCGGGAATCGAACTCTTCGGGAAGTTCGTCAACGCTATTCACG
TATAGATCGCCAAGAACTTCACGCTTGTCGGGCAGTGCGAACTTGTGCGC
ATCCGGATGGACGCCCATCAAGCGGCGAATATGTCCCTCCGTTACGGATG
CATCGAAATTGCGA

BS07022.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10992-PA 1023 CG10992-RA 126..1023 914..17 4465 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-RC 1594 CG10992-RC 367..1265 914..16 4480 99.9 Minus
CtsB1-RA 1425 CG10992-RA 367..1265 914..16 4480 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13780176..13780653 16..493 2390 100 Plus
X 23542271 X 13781471..13781728 657..914 1275 99.6 Plus
X 23542271 X 13781158..13781326 490..658 845 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:59:32 has no hits.

BS07022.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:28 Download gff for BS07022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10992-PA 127..1023 17..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:51 Download gff for BS07022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10992-PA 127..1023 17..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:09:12 Download gff for BS07022.3prime
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 277..1181 7..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:07 Download gff for BS07022.3prime
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 368..1272 7..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:07 Download gff for BS07022.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13780169..13780650 7..490 99 <- Plus
X 13781159..13781326 491..658 100 <- Plus
X 13781473..13781727 659..913 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:09:12 Download gff for BS07022.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13674202..13674683 7..490 99 <- Plus
arm_X 13675192..13675359 491..658 100 <- Plus
arm_X 13675506..13675760 659..913 99   Plus

BS07022.5prime Sequence

907 bp (793 high quality bases) assembled on 2006-01-06

> BS07022.5prime
GAAGTTATCAGTCGACATGAATCTATTGCTCCTGGTGGCCACCGCGGCCT
CCGTGGCGGCACTCACGTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTC
ATCGAGGTGGTGCGCAGTAAGGCCAAAACCTGGACGGTGGGTCGCAATTT
CGATGCATCCGTAACGGAGGGACATATTCGCCGCCTGATGGGCGTCCATC
CGGATGCGCACAAGTTCGCACTGCCCGACAAGCGTGAAGTTCTTGGCGAT
CTATACGTGAATAGCGTTGACGAACTTCCCGAAGAGTTCGATTCCCGCAA
GCAATGGCCAAACTGCCCAACCATTGGCGAGATTCGCGACCAGGGTTCAT
GCGGCTCCTGCTGGGCCTTTGGTGCCGTGGAAGCCATGTCCGATCGCGTG
TGCATCCATTCCGGCGGCAAGGTGAATTTCCACTTTTCGGCCGATGATCT
CGTCTCCTGCTGCCACACCTGCGGATTTGGCTGCAATGGCGGTTTCCCCG
GCGCCGCCTGGAGCTACTGGACGCGCAAGGGAATCGTCAGCGGAGGACCC
TACGGATCTAATCAGGGCTGCCGTCCTTACGAGATTTCTCCCTGTGAGCA
CCATGTGAATGGAACCCGACCACCATGTGCCCATGGCGGTAGAACGCCCA
AGTGTTCGCACGTCTGCCAGAGCGGTTACACCGTCGATTATGCCAAGGAC
AAGCACTTCGGCTCCAAGTCGTACTCGGTGAGGCGTAATGTGCGTGAAAT
TCAGGAGGAGATCATGACCAATGGACCGGTTGAGGGCGCCTTCACCGTTT
ATGAGGATCTCATTCTGTACAAGGACGGTGTCTATCAGCACGAGCATGGC
AAGGAGCTGGGCGGTCATGCCATTCGCATTTTGGGGCTGGGGCGTTTGGG
GCGAGGA

BS07022.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10992-PA 1023 CG10992-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-RC 1594 CG10992-RC 242..1131 17..907 4430 99.9 Plus
CtsB1-RA 1425 CG10992-RA 242..1131 17..907 4430 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13780310..13780653 907..563 1675 99.7 Minus
X 23542271 X 13781471..13781734 399..136 1320 100 Minus
X 23542271 X 13781158..13781326 566..398 845 100 Minus
X 23542271 X 13781808..13781929 138..17 610 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:57:00 has no hits.

BS07022.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:29 Download gff for BS07022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10992-PA 1..889 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:52 Download gff for BS07022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10992-PA 1..889 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:25 Download gff for BS07022.5prime
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 151..1039 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:01 Download gff for BS07022.5prime
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 242..1130 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:01 Download gff for BS07022.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13780311..13780650 566..906 99 <- Minus
X 13781159..13781326 398..565 100 <- Minus
X 13781473..13781733 137..397 100 <- Minus
X 13781810..13781929 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:25 Download gff for BS07022.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13674344..13674683 566..906 99 <- Minus
arm_X 13675192..13675359 398..565 100 <- Minus
arm_X 13675506..13675766 137..397 100 <- Minus
arm_X 13675843..13675962 17..136 100   Minus

BS07022.complete Sequence

1055 bp (1055 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635692

> BS07022.complete
GAAGTTATCAGTCGACATGAATCTATTGCTCCTGGTGGCCACCGCGGCCT
CCGTGGCGGCACTCACGTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTC
ATCGAGGTGGTGCGCAGTAAGGCCAAAACCTGGACGGTGGGTCGCAATTT
CGATGCATCCGTAACGGAGGGACATATTCGCCGCCTGATGGGCGTCCATC
CGGATGCGCACAAGTTCGCACTGCCCGACAAGCGTGAAGTTCTTGGCGAT
CTATACGTGAATAGCGTTGACGAACTTCCCGAAGAGTTCGATTCCCGCAA
GCAATGGCCAAACTGCCCAACCATTGGCGAGATTCGCGACCAGGGTTCAT
GCGGCTCCTGCTGGGCCTTTGGTGCCGTGGAAGCCATGTCCGATCGCGTG
TGCATCCATTCCGGCGGCAAGGTGAATTTCCACTTTTCGGCCGATGATCT
CGTCTCCTGCTGCCACACCTGCGGATTTGGCTGCAATGGCGGTTTCCCCG
GCGCCGCCTGGAGCTACTGGACGCGCAAGGGAATCGTCAGCGGAGGACCC
TACGGATCTAATCAGGGCTGCCGTCCTTACGAGATTTCTCCCTGTGAGCA
CCATGTGAATGGAACCCGACCACCATGTGCCCATGGCGGTAGAACGCCCA
AGTGTTCGCACGTCTGCCAGAGCGGTTACACCGTCGATTATGCCAAGGAC
AAGCACTTCGGCTCCAAGTCGTACTCGGTGAGGCGTAATGTGCGTGAAAT
TCAGGAGGAGATCATGACCAATGGACCGGTTGAGGGCGCCTTCACCGTTT
ATGAGGATCTCATTCTGTACAAGGACGGTGTCTATCAGCACGAGCATGGC
AAGGAGCTGGGCGGTCATGCCATTCGCATTTTGGGCTGGGGCGTTTGGGG
CGAGGAGAAGATTCCGTACTGGCTAATTGGTAACTCGTGGAACACCGATT
GGGGCGATCATGGTTTCTTCCGCATCCTGCGTGGCCAGGATCATTGCGGC
ATCGAGAGCTCCATTTCGGCGGGTCTGCCCAAGCTGTAAAAGCTTTCTAG
ACCAT

BS07022.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-RC 1023 CG10992-PC 1..1023 17..1039 5115 100 Plus
CtsB1-RA 1023 CG10992-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-RC 1594 CG10992-RC 242..1265 17..1040 5120 100 Plus
CtsB1-RA 1425 CG10992-RA 242..1265 17..1040 5120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13780176..13780653 1040..563 2390 100 Minus
X 23542271 X 13781471..13781734 399..136 1320 100 Minus
X 23542271 X 13781158..13781326 566..398 845 100 Minus
X 23542271 X 13781808..13781929 138..17 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:25:43 has no hits.

BS07022.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:07 Download gff for BS07022.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 1..1023 17..1039 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:21 Download gff for BS07022.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 253..1283 17..1049 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:41 Download gff for BS07022.complete
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 151..1171 17..1037 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:07 Download gff for BS07022.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 253..1283 17..1049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:15 Download gff for BS07022.complete
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 242..1262 17..1037 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:15 Download gff for BS07022.complete
Subject Subject Range Query Range Percent Splice Strand
X 13781473..13781733 137..397 100 <- Minus
X 13780179..13780650 566..1037 100 <- Minus
X 13781159..13781326 398..565 100 <- Minus
X 13781810..13781929 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:41 Download gff for BS07022.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13675192..13675359 398..565 100 <- Minus
arm_X 13674212..13674683 566..1037 100 <- Minus
arm_X 13675506..13675766 137..397 100 <- Minus
arm_X 13675843..13675962 17..136 100   Minus

BS07022.pep Sequence

Translation from 16 to 1038

> BS07022.pep
MNLLLLVATAASVAALTSGEPSLLSDEFIEVVRSKAKTWTVGRNFDASVT
EGHIRRLMGVHPDAHKFALPDKREVLGDLYVNSVDELPEEFDSRKQWPNC
PTIGEIRDQGSCGSCWAFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCH
TCGFGCNGGFPGAAWSYWTRKGIVSGGPYGSNQGCRPYEISPCEHHVNGT
RPPCAHGGRTPKCSHVCQSGYTVDYAKDKHFGSKSYSVRRNVREIQEEIM
TNGPVEGAFTVYEDLILYKDGVYQHEHGKELGGHAIRILGWGVWGEEKIP
YWLIGNSWNTDWGDHGFFRILRGQDHCGIESSISAGLPKL*

BS07022.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-PC 340 CG10992-PC 1..340 1..340 1893 100 Plus
CtsB1-PA 340 CG10992-PA 1..340 1..340 1893 100 Plus
Swim-PA 431 CG3074-PA 182..420 82..338 366 35.2 Plus
Swim-PB 431 CG3074-PB 182..420 82..338 366 35.2 Plus
CG12163-PB 475 CG12163-PB 254..473 86..337 236 27.6 Plus