Clone Sequence Records
BS07023.3prime Sequence
876 bp (765 high quality bases) assembled on 2006-01-06
> BS07023.3prime
ATGGTCTAGAAAGCTTCTACGAACGCTTGCTGCGCGCCTGCGCCTGCAGC
AGATCCACCGACGGCACGACAAACACAAACGACAGGCAACCGAATCGCAG
CAGGCTGCCGTGAGCCAGCACCGCCGATCCCTCCCAGGCGCCATCCACCA
TGGGCACTGGTCCGGCGTTCATGCAGCGGCAGGCGGGCTTAACAATGGGC
GCCAATCGTTCTTTGTCGATTTTCTTCGTCTCGAACTGGCGATTAATGTT
CCGACGCTTGTCCAGCATCTCATCGACGCGCTTCTTCAGCTCCGCATCGT
CAGGTCGCATCGGCTTGCCGGCGTGCGTTGTCATCCTTTCGGTCACGTCG
CAGGCATACAGCTGTCCATTCACCTCGGTGCCAAACTCTGAGTAATTGAT
CAGCTCGTACGACTTGGAGAATTCGTCGTAGAAGATGATGGCGTGCTGCG
GTGAAATGCGACAACAGTAACCAATGGCCGACAGGTCCACGGTCTCCGTT
TGCGCCAGCGTCGTCGATGGCGAATAGTGTCCACCGTAGCCAATGTACAG
CGTGCGGTAGCGCATGAAAATCGAATGGTCCAGCCCCAGCGAACTGAACC
AGCGGCTATCCTCGAGCATGTCGCCCAGTGGCGTTATCACCGCACGCGCC
TGCACTTTGCACTGCAGCAGCTTGAGCTCCAGGCGCGATGCCAGCTCGTA
TGCCTTCTCCGTGTCGCTACGGGCACGCGGCGCATAGCTTTCGGCAGCGG
CATCTGCTGCTGCAATGGCCGCCGCTGTGGCCAGTGCCGGATGCAGGGCC
GTTGCGGGATCTTCGTCGGCGGCATTGCCATTCTTTTGCGCCAAAATTGA
GGACGTTTCGCTGGTGAAGAGCAGCG
BS07023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-PA | 2637 | CG3815-RA | 1778..2637 | 876..17 | 4275 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-RA | 3232 | CG3815-RA | 1895..2756 | 876..15 | 4295 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6297562..6298231 | 876..207 | 3335 | 99.9 | Minus |
| X | 23542271 | X | 6298302..6298494 | 207..15 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:26:31 has no hits.
BS07023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:30 Download gff for
BS07023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-PA | 1778..2637 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:54 Download gff for
BS07023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-PA | 1778..2637 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:42:39 Download gff for
BS07023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 1895..2756 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:54 Download gff for
BS07023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 1895..2756 | 15..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:54 Download gff for
BS07023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6297562..6298231 | 207..876 | 99 | -> | Minus |
| X | 6298303..6298494 | 15..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:42:39 Download gff for
BS07023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6191595..6192264 | 207..876 | 99 | -> | Minus |
| arm_X | 6192336..6192527 | 15..206 | 100 | | Minus |
BS07023.5prime Sequence
865 bp (759 high quality bases) assembled on 2006-01-06
> BS07023.5prime
GAAGTTATCAGTCGACATGTCAAAATTGGACCAGGACCCGAACGCCTCAC
TGAGCATCATGGAGCAAATCAAGCAGCTCATCCGCCCGCCGCCCAACGAG
GACGAGAAGATGATGCAGCGGTCCACCAACACGAAGCATCCGTACTACAG
GCGCCCGGGCAGGGGCCACAACCACGACTATTGTGACGCCTGCGAGGAGG
GCGGCAATCTGCTGTGCTGCGATCGATGCCCCTCCAGCTTCCACCTGCAA
TGCCATGATCCACCGTTGAGCGAGGAGGACATACCCAGTGGCCAGTGGCT
GTGCCACAGCTGTCGCATGAGCAAGCTCTCCCAGCCGCCGGCCTCCTCAT
CCAAGGCCAGTTCCGTGGAGCGTGTGCCTTCGGCGGGCAGTGGCTCACGG
GCGAATACTCCATCGTCTGGCGATCTGGAGTCCATACCGCTGAAGATCCG
CAACCTGCGCAAACGCAGCAACAGCGAACGCAATAGCACCGAGAAGCTGC
TGGCCAAAATGCCGATGTCCATACAGCGCGCCCTCGATCCGAACAAGAAG
CCAACGCCGCTGGACGATGTCATCAGGGCGGCCACCATGATGAATCCGCA
GCAATTCTCGCTGCCGCCGGAGCTCGAGCTGCACACCCAGTTCCCGGGCA
ATGGCAAGGTGCAACCCGTACAGCAGACGCATCCGCCGAGCGGAAATGGC
GGTAATCGCAGATGCGCCGGCAATCAGCGACGCAACTCCAAGCCGTTTGA
GCTGGATGCCCAGGGACTGGTGCCGCTGCCCGCCAAAACCTGTTTCTACT
GCACGCGCTCCTGCAAACGGGCGCCGCTCATCTCCTGCGACTACTGTCCG
CTCTACTTTCACCAG
BS07023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-PA | 2637 | CG3815-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-RA | 3232 | CG3815-RA | 118..966 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6295964..6296573 | 256..865 | 3050 | 100 | Plus |
| X | 23542271 | X | 6295708..6295900 | 63..255 | 965 | 100 | Plus |
| X | 23542271 | X | 6295506..6295553 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:16:36 has no hits.
BS07023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:31 Download gff for
BS07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:44:55 Download gff for
BS07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:57:53 Download gff for
BS07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 118..966 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:14:19 Download gff for
BS07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 118..966 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:14:19 Download gff for
BS07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6295710..6295900 | 65..255 | 100 | -> | Plus |
| X | 6295506..6295553 | 17..64 | 100 | -> | Plus |
| X | 6295964..6296573 | 256..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:57:53 Download gff for
BS07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6189539..6189586 | 17..64 | 100 | -> | Plus |
| arm_X | 6189743..6189933 | 65..255 | 100 | -> | Plus |
| arm_X | 6189997..6190606 | 256..865 | 100 | | Plus |
BS07023.complete Sequence
2669 bp assembled on 2008-01-02
GenBank Submission: FJ635693
> BS07023.complete
GAAGTTATCAGTCGACATGTCAAAATTGGACCAGGACCCGAACGCCTCAC
TGAGCATCATGGAGCAAATCAAGCAGCTCATCCGCCCGCCGCCCAACGAG
GACGAGAAGATGATGCAGCGGTCCACCAACACGAAGCATCCGTACTACAG
GCGCCCGGGCAGGGGCCACAACCACGACTATTGTGACGCCTGCGAGGAGG
GCGGCAATCTGCTGTGCTGCGATCGATGCCCCTCCAGCTTCCACCTGCAA
TGCCATGATCCACCGTTGAGCGAGGAGGACATACCCAGTGGCCAGTGGCT
GTGCCACAGCTGTCGCATGAGCAAGCTCTCCCAGCCGCCGGCCTCCTCAT
CCAAGGCCAGTTCCGTGGAGCGTGTGCCTTCGGCGGGCAGTGGCTCACGG
GCGAATACTCCATCGTCTGGCGATCTGGAGTCCATACCGCTGAAGATCCG
CAACCTGCGCAAACGCAGCAACAGCGAACGCAATAGCACCGAGAAGCTGC
TGGCCAAAATGCCGATGTCCATACAGCGCGCCCTCGATCCGAACAAGAAG
CCAACGCCGCTGGACGATGTCATCAGGGCGGCCACCATGATGAATCCGCA
GCAATTCTCGCTGCCGCCGGAGCTCGAGCTGCACACCCAGTTCCCGGGCA
ATGGCAAGGTGCAACCCGTACAGCAGACGCATCCGCCGAGCGGAAATGGC
GGTAATCGCAGATGCGCCGGCAATCAGCGACGCAACTCCAAGCCGTTTGA
GCTGGATGCCCAGGGACTGGTGCCGCTGCCCGCCAAAACCTGTTTCTACT
GCACGCGCTCCTGCAAACGGGCGCCGCTCATCTCCTGCGACTACTGTCCG
CTCTACTTTCACCAGGATTGCCTGGATCCGCCACTGACGGCACTGCCAGC
TGGATTGTGGATGTGCCCCAATCATGCCGAGAATTTTATCGATGCCAATA
TGACCAATAGCATTTCGGCCACGGAGCGGGTGCGTCTCTGGAATCGCTTC
CACCAGCCACTTGACCATGAAAATGTCAAGCTTGAGTTCTTCCGGCGTGT
CAACACGCGCAATCCGCCCTTTCGCACCAAGAGAAATCTGCGTGCTCGCG
CCCACATCGAGGTGCCAGCCATTGTGCGCTACCACTACGATCATCCGCCG
CCGCTGTTGCCCTCCATGCGCCAAACGTTGCGCTACGATCGGGTAAAGCG
GCGCAATAACCTGCCCACCGAAGTCGAGGAGATATCCCGTGAGTCGGTCA
CCGAATCGCTGCTCAAGGATCTGGAGGCCTTGCGCACGGCTCACGCCAAA
TTCCGTGAGATTCAGAGGGAATTCGGAACCTTGGAGACGGCCATAGATGG
CGATAGCGACAGCGATCCCAGTCCTGAAGAGAAAAGGACCGAGACGAACA
CTCCCGCCGATAAAGTGAATGGCGAAGTGGATACGGAGAATCCCAATACA
GAATCGAATGCGCAGGCCAGCGAACAGCCGTCGGTTGTCAAGGTGGAGTC
CAAGACCAGCCTAGAGGTGGAGGCTAGCTTCGAGGAGGACGAGGAGGACA
GCAAGAAATCAACGGGTATTATCGATGCAGACCTCTTACACCTGGACGTC
GATATAATCAAGAAGCTGGCGCACCAGCGTCTGCAGCAGCTGGTCGAAGA
GCATCCGGAGATTGTGACACAGTACAAGAATCGCACGGCCGCTCGTCGCC
TGCGTCAACTGGCGTCAGTCGATGGCACACATGTGGCTGGCGAAACTGCT
GCCCTGCAAGGCCAACTGGCGCCGGAGGATATGAACCGTTTCTCGCTGCT
CTTCACCAGCGAAACGTCCTCAATTCTGGCGCAAAAGAATGGCAATGCCG
CCGACGAAGATCCCGCAACGGCCCTGCATCCGGCACTGGCCACAGCGGCG
GCCATTGCAGCAGCAGATGCCGCTGCCGAAAGCTATGCGCCGCGTGCCCG
TAGCGACACGGAGAAGGCATACGAGCTGGCATCGCGCCTGGAGCTCAAGC
TGCTGCAGTGCAAAGTGCAGGCGCGTGCGGTGATAACGCCACTGGGCGAC
ATGCTCGAGGATAGCCGCTGGTTCAGTTCGCTGGGGCTGGACCATTCGAT
TTTCATGCGCTACCGCACGCTGTACATTGGCTACGGTGGACACTATTCGC
CATCGACGACGCTGGCGCAAACGGAGACCGTGGACCTGTCGGCCATTGGT
TACTGTTGTCGCATTTCACCGCAGCACGCCATCATCTTCTACGACGAATT
CTCCAAGTCGTACGAGCTGATCAATTACTCAGAGTTTGGCACCGAGGTGA
ATGGACAGCTGTATGCCTGCGACGTGACCGAAAGGATGACAACGCACGCC
GGCAAGCCGATGCGACCTGACGATGCGGAGCTGAAGAAGCGCGTCGATGA
GATGCTGGACAAGCGTCGGAACATTAATCGCCAGTTCGAGACGAAGAAAA
TCGACAAAGAACGATTGGCGCCCATTGTTAAGCCCGCCTGCCGCTGCATG
AACGCCGGACCAGTGCCCATGGTGGATGGCGCCTGGGAGGGATCGGCGGT
GCTGGCTCACGGCAGCCTGCTGCGATTCGGTTGCCTGTCGTTTGTGTTTG
TCGTGCCGTCGGTGGATCTGCTGCAGGCGCAGGCGCGCAGCAAGCGTTCG
TAGAAGCTTTCTAGACCAT
BS07023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-RA | 2637 | CG3815-PA | 1..2637 | 17..2653 | 13185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-RA | 3232 | CG3815-RA | 118..2756 | 17..2655 | 13195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6296709..6298231 | 941..2463 | 7615 | 100 | Plus |
| X | 23542271 | X | 6295964..6296649 | 256..941 | 3430 | 100 | Plus |
| X | 23542271 | X | 6295708..6295900 | 63..255 | 965 | 100 | Plus |
| X | 23542271 | X | 6298302..6298494 | 2463..2655 | 965 | 100 | Plus |
| X | 23542271 | X | 6295506..6295553 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:44:33 has no hits.
BS07023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:32 Download gff for
BS07023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 1..2637 | 17..2653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:44 Download gff for
BS07023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 116..2752 | 17..2653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:36 Download gff for
BS07023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 118..2754 | 17..2653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:32 Download gff for
BS07023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 116..2754 | 17..2655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:20 Download gff for
BS07023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 118..2754 | 17..2653 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:20 Download gff for
BS07023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6295506..6295553 | 17..64 | 100 | -> | Plus |
| X | 6295710..6295900 | 65..255 | 100 | -> | Plus |
| X | 6295964..6296648 | 256..940 | 100 | -> | Plus |
| X | 6296709..6298231 | 941..2463 | 100 | -> | Plus |
| X | 6298303..6298492 | 2464..2653 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:36 Download gff for
BS07023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6192336..6192525 | 2464..2653 | 100 | | Plus |
| arm_X | 6190742..6192264 | 941..2463 | 100 | -> | Plus |
| arm_X | 6189539..6189586 | 17..64 | 100 | -> | Plus |
| arm_X | 6189743..6189933 | 65..255 | 100 | -> | Plus |
| arm_X | 6189997..6190681 | 256..940 | 100 | -> | Plus |
BS07023.pep Sequence
Translation from 16 to 2652
> BS07023.pep
MSKLDQDPNASLSIMEQIKQLIRPPPNEDEKMMQRSTNTKHPYYRRPGRG
HNHDYCDACEEGGNLLCCDRCPSSFHLQCHDPPLSEEDIPSGQWLCHSCR
MSKLSQPPASSSKASSVERVPSAGSGSRANTPSSGDLESIPLKIRNLRKR
SNSERNSTEKLLAKMPMSIQRALDPNKKPTPLDDVIRAATMMNPQQFSLP
PELELHTQFPGNGKVQPVQQTHPPSGNGGNRRCAGNQRRNSKPFELDAQG
LVPLPAKTCFYCTRSCKRAPLISCDYCPLYFHQDCLDPPLTALPAGLWMC
PNHAENFIDANMTNSISATERVRLWNRFHQPLDHENVKLEFFRRVNTRNP
PFRTKRNLRARAHIEVPAIVRYHYDHPPPLLPSMRQTLRYDRVKRRNNLP
TEVEEISRESVTESLLKDLEALRTAHAKFREIQREFGTLETAIDGDSDSD
PSPEEKRTETNTPADKVNGEVDTENPNTESNAQASEQPSVVKVESKTSLE
VEASFEEDEEDSKKSTGIIDADLLHLDVDIIKKLAHQRLQQLVEEHPEIV
TQYKNRTAARRLRQLASVDGTHVAGETAALQGQLAPEDMNRFSLLFTSET
SSILAQKNGNAADEDPATALHPALATAAAIAAADAAAESYAPRARSDTEK
AYELASRLELKLLQCKVQARAVITPLGDMLEDSRWFSSLGLDHSIFMRYR
TLYIGYGGHYSPSTTLAQTETVDLSAIGYCCRISPQHAIIFYDEFSKSYE
LINYSEFGTEVNGQLYACDVTERMTTHAGKPMRPDDAELKKRVDEMLDKR
RNINRQFETKKIDKERLAPIVKPACRCMNAGPVPMVDGAWEGSAVLAHGS
LLRFGCLSFVFVVPSVDLLQAQARSKRS*
BS07023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-PA | 878 | CG3815-PA | 1..878 | 1..878 | 4615 | 100 | Plus |
| Chd3-PA | 892 | CG9594-PA | 14..79 | 26..99 | 165 | 40.5 | Plus |
