Clone Sequence Records
BS07025.3prime Sequence
926 bp (738 high quality bases) assembled on 2006-01-06
> BS07025.3prime
ATGGTCTAGAAAGCTTTCAGTGCTCGTCCAGGTGCGAGAACTTTTTGCGC
AGCTTCTCGCGCCTCTCCTTCTTCACATGACGCCAGGGCTTGGCCGCCGG
ATCATTGCCGGCTACTAGGGACCCGTCGTTGGCCAGGCGCACGTTAGGGA
AGTTAGTGCGTCCTTTGACGTGGGCGTGCGTAGGCTTGTCGGAGAAGAAT
TGGTTGTCTAGCTCCTTGGACGTGCTTTTGTTGATCCGCATGGCTCGCTG
CTGTTGGCCGGGCAGCTGTGATTCCTCGATGACCCTGCGCTGGCGTTCGG
GAAAGGTGTGATACTCGGTCTGCGGTACAGAGGGCGGGCTCATGGCGTAG
AGCAGTCTGCCATTGACGTAGTCTTTAAGCACATACCTGGCGGAACGCGC
CTGATCCGGCTGCCCGTTGGAGGTCATAAAACCGCGATTGTATCCATAAG
CCAGCAGCAGCTCCTCCGAATGCGGTGGCCTTTCCATGTCCTCGCCTTCC
AGCGGCTTGGCTATCACAATACCGTATTTGTCTTCAAGGACGTGGCGCGG
AATGCGCTCGCACAGCAAGTTGACGGCGGGAACGTGATCGCGCATTTGGT
CAATGGGCAGGATGCCGTTGAGCAACATGTCCGCCTTGGTTAACACAAAA
CTCGGCATCACCAGACCGGGACAGTCGCAGAGCAGTATGTCCTTGTCCAG
GAAAAGCGTCTGGAAGCGTTTAGTTTTGCCCGGCGTGGCCGAAACGGACA
CCTTCTTCACTGTCATCAGCGAGTTGATGGTGCTACTTTTGCCAACGTTT
GGGTAGCCGACCATTCCGACGGTCACGTGCTGCTCTGTGTGCCGGGGACC
GGTGTAGATGTTTCGCAGGAACTCAATGAGCTCCAGGCGGGACAGCAGTC
GGGGACTGTTCTTGTCCCCGGGGCAT
BS07025.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14788-PA | 1821 | l(1)G0431-RA | 916..1821 | 922..17 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 2176 | CG14788-RB | 1021..1926 | 922..17 | 4530 | 100 | Minus |
| Ns3-RA | 2040 | CG14788-RA | 1021..1926 | 922..17 | 4530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1462646..1463126 | 442..922 | 2405 | 100 | Plus |
| X | 23542271 | X | 1462094..1462313 | 17..236 | 1100 | 100 | Plus |
| X | 23542271 | X | 1462373..1462578 | 236..441 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:28:10 has no hits.
BS07025.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:34 Download gff for
BS07025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14788-PA | 912..1821 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:00 Download gff for
BS07025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14788-PA | 912..1821 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:17 Download gff for
BS07025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 1017..1926 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:16 Download gff for
BS07025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 1017..1926 | 17..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:16 Download gff for
BS07025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1462094..1462312 | 17..235 | 100 | <- | Plus |
| X | 1462373..1462578 | 236..441 | 100 | <- | Plus |
| X | 1462646..1463128 | 442..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:17 Download gff for
BS07025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1356127..1356345 | 17..235 | 100 | <- | Plus |
| arm_X | 1356406..1356611 | 236..441 | 100 | <- | Plus |
| arm_X | 1356679..1357161 | 442..926 | 99 | | Plus |
BS07025.5prime Sequence
854 bp (776 high quality bases) assembled on 2006-01-06
> BS07025.5prime
GAAGTTATCAGTCGACATGGGCAAAAAGAACAAGGGCGGCGCCCCCAACC
TGGGCCGCCAGTTGATCAAGGATCGTTTCGGACACACTCAGCGCCGCAAG
GTGGACAACGACACGATGCTGCACACCACCGAGCTGCAGGATGGCTACGA
CTGGGGCCGCCTCAACCTGTCCTCTGTCACTGAGGAGTCGTCGTTCCAGG
CCTTCCTGCGCACGGCTGAGCTGGCCGGCACTGAGTTCCAGGCCGAGAAG
CTGAACATCACGTTCGTGAACCCCAAGCAGCGCGTTGGACTGCTGAGCAA
GACGCAGGAGCAGCGCATGCACCAGAAGCACGACGAGCACCGTGACCAGC
TCAAGATCCCGCGGCGGCCCAAGTGGACCAAGGAGACGAGCGCCGAGGAG
CTAGTGCGAGCCGAGAACGAGGCATTTCTCGACTGGCGCCGCGACCTGGC
GCTGCTGCAGGAGGACGAGGAGATCTTGATGACTCCGTATGAGAAGAACC
TGGAGTTCTGGCGGCAGCTGTGGCGCGTAGTGGAGCGATCTGACGTCGTT
GTGCAGATCGTAGACGCCCGTAATCCGCTGCTGTTCCGCAGCGCCGACCT
TGAGCGCTACGTAAAGGAGGTGGAACCTAGCAAGATGAACATGATCCTGG
TAAACAAGTCGGACCTGCTCACTGAGGAACAGCGTCGCCACTGGGCGGAG
TACTTTGACAGCGAGGGTATTCGCACGGCCTTCTACTCGGCCACGCTGGT
AGAGGAGGAGTTGAAGCGGGAGGCGGAGGAGTGCCTGGATTCCTTTCCCG
AGGTGCAACAGCTGCGCAGAGCAGTTGAGGAGATAAAACAGTCGTTGGAT
AGCG
BS07025.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14788-PA | 1821 | l(1)G0431-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 2176 | CG14788-RB | 105..943 | 16..854 | 4195 | 100 | Plus |
| Ns3-RA | 2040 | CG14788-RA | 105..943 | 16..854 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1463204..1463940 | 854..118 | 3685 | 100 | Minus |
| X | 23542271 | X | 1464014..1464116 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:35:28 has no hits.
BS07025.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:35 Download gff for
BS07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14788-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:01 Download gff for
BS07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14788-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:26:16 Download gff for
BS07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 94..943 | 3..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:24 Download gff for
BS07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 94..943 | 3..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:24 Download gff for
BS07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1463204..1463939 | 119..854 | 100 | <- | Minus |
| X | 1464014..1464127 | 3..118 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:26:16 Download gff for
BS07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1357237..1357972 | 119..854 | 100 | <- | Minus |
| arm_X | 1358047..1358160 | 3..118 | 95 | | Minus |
BS07025.complete Sequence
1853 bp assembled on 2008-01-02
GenBank Submission: FJ635694
> BS07025.complete
GAAGTTATCAGTCGACATGGGCAAAAAGAACAAGGGCGGCGCCCCCAACC
TGGGCCGCCAGTTGATCAAGGATCGTTTCGGACACACTCAGCGCCGCAAG
GTGGACAACGACACGATGCTGCACACCACCGAGCTGCAGGATGGCTACGA
CTGGGGCCGCCTCAACCTGTCCTCTGTCACTGAGGAGTCGTCGTTCCAGG
CCTTCCTGCGCACGGCTGAGCTGGCCGGCACTGAGTTCCAGGCCGAGAAG
CTGAACATCACGTTCGTGAACCCCAAGCAGCGCGTTGGACTGCTGAGCAA
GACGCAGGAGCAGCGCATGCACCAGAAGCACGACGAGCACCGTGACCAGC
TCAAGATCCCGCGGCGGCCCAAGTGGACCAAGGAGACGAGCGCCGAGGAG
CTAGTGCGAGCCGAGAACGAGGCATTTCTCGACTGGCGCCGCGACCTGGC
GCTGCTGCAGGAGGACGAGGAGATCTTGATGACTCCGTATGAGAAGAACC
TGGAGTTCTGGCGGCAGCTGTGGCGCGTAGTGGAGCGATCTGACGTCGTT
GTGCAGATCGTAGACGCCCGTAATCCGCTGCTGTTCCGCAGCGCCGACCT
TGAGCGCTACGTAAAGGAGGTGGAACCTAGCAAGATGAACATGATCCTGG
TAAACAAGTCGGACCTGCTCACTGAGGAACAGCGTCGCCACTGGGCGGAG
TACTTTGACAGCGAGGGTATTCGCACGGCCTTCTACTCGGCCACGCTGGT
AGAGGAGGAGTTGAAGCGGGAGGCGGAGGAGTGCCTGGATTCCTTTCCCG
AGGTGCAACAGCTGCGCAGAGCAGTTGAGGAGATAAAACAGTCGTTGGAT
AGCGTGGAGGACGCTTTGAACGTTATCGAGCAGAAATATAAGACGATTCC
CGAGACTCAAAACGATGAGCTGCCACGATTGCCCGGGGACAAGAACAGTC
CCCGACTGCTGTCCCGCCTGGAGCTCATTGAGTTCCTGCGAAACATCTAC
ACCGGTCCCCGGCACACAGAGCAGCACGTGACCGTCGGAATGGTCGGCTA
CCCAAACGTTGGCAAAAGTAGCACCATCAACTCGCTGATGACAGTGAAGA
AGGTGTCCGTTTCGGCCACGCCGGGCAAAACTAAACGCTTCCAGACGCTT
TTCCTGGACAAGGACATACTGCTCTGCGACTGTCCCGGTCTGGTGATGCC
GAGTTTTGTGTTAACCAAGGCGGACATGTTGCTCAACGGCATCCTGCCCA
TTGACCAAATGCGCGATCACGTTCCCGCCGTCAACTTGCTGTGCGAGCGC
ATTCCGCGCCACGTCCTTGAAGACAAATACGGTATTGTGATAGCCAAGCC
GCTGGAAGGCGAGGACATGGAAAGGCCACCGCATTCGGAGGAGCTGCTGC
TGGCTTATGGATACAATCGCGGTTTTATGACCTCCAACGGGCAGCCGGAT
CAGGCGCGTTCCGCCAGGTATGTGCTTAAAGACTACGTCAATGGCAGACT
GCTCTACGCCATGAGCCCGCCCTCTGTACCGCAGACCGAGTATCACACCT
TTCCCGAACGCCAGCGCAGGGTCATCGAGGAATCACAGCTGCCCGGCCAA
CAGCAGCGAGCCATGCGGATCAACAAAAGCACGTCCAAGGAGCTAGACAA
CCAATTCTTCTCCGACAAGCCTACGCACGCCCACGTCAAAGGACGCACTA
ACTTCCCTAACGTGCGCCTGGCCAACGACGGGTCCCTAGTAGCCGGCAAT
GATCCGGCGGCCAAGCCCTGGCGTCATGTGAAGAAGGAGAGGCGCGAGAA
GCTGCGCAAAAAGTTCTCGCACCTGGACGAGCACTGAAAGCTTTCTAGAC
CAT
BS07025.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 1821 | CG14788-PB | 1..1821 | 17..1837 | 9105 | 100 | Plus |
| Ns3-RA | 1821 | CG14788-PA | 1..1821 | 17..1837 | 9105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 2176 | CG14788-RB | 105..1926 | 16..1837 | 9110 | 100 | Plus |
| Ns3-RA | 2040 | CG14788-RA | 105..1926 | 16..1837 | 9110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1462646..1463940 | 1412..118 | 6475 | 100 | Minus |
| X | 23542271 | X | 1462094..1462313 | 1837..1618 | 1100 | 100 | Minus |
| X | 23542271 | X | 1462373..1462578 | 1618..1413 | 1030 | 100 | Minus |
| X | 23542271 | X | 1464014..1464116 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:08:13 has no hits.
BS07025.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:33 Download gff for
BS07025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0431-RA | 1..1821 | 17..1837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:37 Download gff for
BS07025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0431-RA | 98..1917 | 17..1836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:36 Download gff for
BS07025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 106..1925 | 17..1836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:33 Download gff for
BS07025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0431-RA | 86..1918 | 3..1837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:11 Download gff for
BS07025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 106..1925 | 17..1836 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:11 Download gff for
BS07025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1462095..1462312 | 1619..1836 | 100 | <- | Minus |
| X | 1462373..1462578 | 1413..1618 | 100 | <- | Minus |
| X | 1462646..1463939 | 119..1412 | 100 | <- | Minus |
| X | 1464014..1464115 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:36 Download gff for
BS07025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1356406..1356611 | 1413..1618 | 100 | <- | Minus |
| arm_X | 1356128..1356345 | 1619..1836 | 100 | <- | Minus |
| arm_X | 1358047..1358148 | 17..118 | 100 | | Minus |
| arm_X | 1356679..1357972 | 119..1412 | 100 | <- | Minus |
BS07025.pep Sequence
Translation from 16 to 1836
> BS07025.pep
MGKKNKGGAPNLGRQLIKDRFGHTQRRKVDNDTMLHTTELQDGYDWGRLN
LSSVTEESSFQAFLRTAELAGTEFQAEKLNITFVNPKQRVGLLSKTQEQR
MHQKHDEHRDQLKIPRRPKWTKETSAEELVRAENEAFLDWRRDLALLQED
EEILMTPYEKNLEFWRQLWRVVERSDVVVQIVDARNPLLFRSADLERYVK
EVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAFYSATLVEEELK
REAEECLDSFPEVQQLRRAVEEIKQSLDSVEDALNVIEQKYKTIPETQND
ELPRLPGDKNSPRLLSRLELIEFLRNIYTGPRHTEQHVTVGMVGYPNVGK
SSTINSLMTVKKVSVSATPGKTKRFQTLFLDKDILLCDCPGLVMPSFVLT
KADMLLNGILPIDQMRDHVPAVNLLCERIPRHVLEDKYGIVIAKPLEGED
MERPPHSEELLLAYGYNRGFMTSNGQPDQARSARYVLKDYVNGRLLYAMS
PPSVPQTEYHTFPERQRRVIEESQLPGQQQRAMRINKSTSKELDNQFFSD
KPTHAHVKGRTNFPNVRLANDGSLVAGNDPAAKPWRHVKKERREKLRKKF
SHLDEH*
BS07025.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-PB | 606 | CG14788-PB | 1..606 | 1..606 | 3156 | 100 | Plus |
| Ns3-PA | 606 | CG14788-PA | 1..606 | 1..606 | 3156 | 100 | Plus |
| Ns4-PA | 575 | CG9320-PA | 113..498 | 115..510 | 392 | 32.4 | Plus |
| Ns1-PA | 581 | CG3983-PA | 139..424 | 163..506 | 291 | 26.7 | Plus |
| Ns2-PA | 674 | CG6501-PA | 299..476 | 320..508 | 212 | 31.2 | Plus |
