Clone BS07027 Report

Search the DGRC for BS07027

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:27
Vector:pDNR-Dual
Associated Gene/Transcriptstops-RB
Protein status:BS07027.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07027.3prime Sequence

958 bp (801 high quality bases) assembled on 2006-01-06

> BS07027.3prime
ATGGTCTAGAAAGCTTCTATCTGGGCTCGCCGGGCAAGGAAATTGGCGGA
AAATCGGGATCGAAATCGGGTGGACAGGCCGCCACGTAGGCCTCTACCGC
AGCCTTTTTGGCCTCCTCCGTATACGCTCCATCGCCGGTGGCCATGAAAG
CCGCCAATGCGGCCTTTTCCGGATCCGTGACAGCCTGCAGGAGCTGCGCT
TGATTCTCACTCTCGTCCTCGCTCTCCCCTGCACTGCTGATTGTATCCAG
CCGTCCCATCTCGCTTCCCATCTTGCATTTGGCCGAGGACTTTCCCCTCT
GCTGATCCTTGTCCTCCGTGTCCTGTGCCTCAGGTCCTTCAAGCTCCTCG
GTGAGATCGATGTAGCGTTGCAGGCGCTTTGGCAACCTCAACGTGTCGAT
GCCGCTTGGCAGTTGATTGTGCATCCGCATGACGTCGCGGATACAGCAGC
GGCATAAATGACGTAGACTGGGCACTCCGTAGACCTGCTCTTTGCCGATA
ATCTTGTCCATTAAAAGGCGGCCATAGCGATCGAAGAACATTTCCCTTCG
GGCAGCGTATAAAAGGGGCTTGAAGGGCATCTCAATCATGACCACATTGC
GCAGCAGAATCTTGAGGCACATGACCAGTTCGAAGCTGTAATTGCGGCCA
TCCTCGATGAGTTTGTCGAGCAGCGCTATAATTACGGAGGCGCCTCCGTC
TGGCGGCTGCGGTGCGGCGCCGTATCTCAGCAGTATGAGCAGCAGTTCGG
GAGCGTTCGCCTGTAGGGCAATGCGAAGGGGCGAGGACTTGCCGCATGAC
TCAATGGGGACATCAATGAATCTGAGCTGTCGCTCCTGCTCGAAGCGCGG
AATCCAGACGGGCAATGTGAGCTGTTCGCGTGTGGCGTGCTTCAGAAGTA
AACATAGCCCGGACATCTCGTGCTGATCTGAAAGTCACTGCGCCAGCCGG
CGATGAAG

BS07027.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31006-PB 1338 CG31006-RB 458..1338 897..17 4405 100 Minus
CG31006-PA 1566 CG31006-RA 686..1566 897..17 4405 100 Minus
CG31006-PB 1338 CG31006-RB 393..423 958..928 155 100 Minus
CG31006-PA 1566 CG31006-RA 621..651 958..928 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
stops-RC 2154 CG31006-RC 936..1881 958..17 4630 99.6 Minus
stops-RA 1970 CG31006-RA 752..1697 958..17 4630 99.6 Minus
stops-RB 2109 CG31006-RB 891..1836 958..17 4630 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31158429..31158862 17..450 2170 100 Plus
3R 32079331 3R 31161173..31161331 569..727 795 100 Plus
3R 32079331 3R 31160958..31161078 450..570 605 100 Plus
3R 32079331 3R 31163540..31163638 726..824 495 100 Plus
3R 32079331 3R 31166176..31166272 822..916 385 97.9 Plus
Blast to na_te.dros performed 2015-02-02 20:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 134..175 857..898 111 73.8 Plus
gypsy4 6852 gypsy4 GYPSY4 6852bp 6704..6745 857..898 111 73.8 Plus

BS07027.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:36 Download gff for BS07027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31006-PA 621..1566 17..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:03 Download gff for BS07027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31006-PA 621..1566 17..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:02:37 Download gff for BS07027.3prime
Subject Subject Range Query Range Percent Splice Strand
stops-RB 888..1833 17..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:13:01 Download gff for BS07027.3prime
Subject Subject Range Query Range Percent Splice Strand
stops-RB 891..1836 17..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:13:01 Download gff for BS07027.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31166176..31166279 822..922 97 <- Plus
3R 31166350..31166386 923..958 97   Plus
3R 31158429..31158861 17..449 100 <- Plus
3R 31160958..31161076 450..568 100 <- Plus
3R 31161173..31161329 569..725 100 <- Plus
3R 31163540..31163635 726..821 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:02:37 Download gff for BS07027.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26984151..26984583 17..449 100 <- Plus
arm_3R 26986680..26986798 450..568 100 <- Plus
arm_3R 26986895..26987051 569..725 100 <- Plus
arm_3R 26989262..26989357 726..821 100 <- Plus
arm_3R 26991898..26992001 822..922 97 <- Plus
arm_3R 26992072..26992108 923..958 97   Plus

BS07027.5prime Sequence

850 bp (799 high quality bases) assembled on 2006-01-06

> BS07027.5prime
GAAGTTATCAGTCGACATGGACTACATCTTCGAGTGCTTCTTCGACGACA
CCTTCGAGCAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGA
GATGTCCTCGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCA
GAACTCGCAGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGA
GGTACCACCGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGC
AAGTATCACAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGG
AGTCCGGGACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGT
GCGAGAAGACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACAT
GCTCCGCACTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGA
GAATGTCCGGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGC
TCACATTGCCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGA
TTCATTGATGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCAT
TGCCCTACAGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACG
GCGCCGCACCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTG
CTCGACAAACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCAT
GTGCCTCAAGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCA
AGCCCCTTTTATACGCTGCCCGAAGGGAAATGTTCTTCGATCGCTATGGC

BS07027.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31006-PA 1566 CG31006-RA 228..1062 16..850 4175 100 Plus
CG31006-PB 1338 CG31006-RB 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
stops-RC 2154 CG31006-RC 543..1377 16..850 4175 100 Plus
stops-RA 1970 CG31006-RA 359..1193 16..850 4175 100 Plus
stops-RB 2109 CG31006-RB 498..1332 16..850 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31168025..31168246 237..16 1110 100 Minus
3R 32079331 3R 31161173..31161331 802..644 795 100 Minus
3R 32079331 3R 31166350..31166460 445..335 555 100 Minus
3R 32079331 3R 31166176..31166282 549..443 535 100 Minus
3R 32079331 3R 31167326..31167429 335..232 520 100 Minus
3R 32079331 3R 31163540..31163638 645..547 495 100 Minus
3R 32079331 3R 31161029..31161078 850..801 250 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:16:55 has no hits.

BS07027.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:37 Download gff for BS07027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31006-PA 221..1062 7..850 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:04 Download gff for BS07027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31006-PA 221..1062 7..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:57:59 Download gff for BS07027.5prime
Subject Subject Range Query Range Percent Splice Strand
stops-RB 488..1329 7..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:15:11 Download gff for BS07027.5prime
Subject Subject Range Query Range Percent Splice Strand
stops-RB 491..1332 7..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:15:11 Download gff for BS07027.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31168027..31168253 7..235 98   Minus
3R 31161029..31161076 803..850 100 <- Minus
3R 31161173..31161329 646..802 100 <- Minus
3R 31163540..31163635 550..645 100 <- Minus
3R 31166176..31166279 446..549 100 <- Minus
3R 31166350..31166459 336..445 100 <- Minus
3R 31167326..31167425 236..335 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:57:59 Download gff for BS07027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26986751..26986798 803..850 100 <- Minus
arm_3R 26986895..26987051 646..802 100 <- Minus
arm_3R 26989262..26989357 550..645 100 <- Minus
arm_3R 26991898..26992001 446..549 100 <- Minus
arm_3R 26992072..26992181 336..445 100 <- Minus
arm_3R 26993048..26993147 236..335 100 <- Minus
arm_3R 26993749..26993975 7..235 98   Minus

BS07027.complete Sequence

1370 bp (1370 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635695

> BS07027.complete
GAAGTTATCAGTCGACATGGACTACATCTTCGAGTGCTTCTTCGACGACA
CCTTCGAGCAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGA
GATGTCCTCGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCA
GAACTCGCAGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGA
GGTACCACCGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGC
AAGTATCACAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGG
AGTCCGGGACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGT
GCGAGAAGACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACAT
GCTCCGCACTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGA
GAATGTCCGGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGC
TCACATTGCCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGA
TTCATTGATGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCAT
TGCCCTACAGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACG
GCGCCGCACCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTG
CTCGACAAACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCAT
GTGCCTCAAGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCA
AGCCCCTTTTATACGCTGCCCGAAGGGAAATGTTCTTCGATCGCTATGGC
CGCCTTTTAATGGACAAGATTATCGGCAAAGAGCAGGTCTACGGAGTGCC
CAGTCTACGTCATTTATGCCGCTGCTGTATCCGCGACGTCATGCGGATGC
ACAATCAACTGCCAAGCGGCATCGACACGTTGAGGTTGCCAAAGCGCCTG
CAACGCTACATCGATCTCACCGAGGAGCTTGAAGGACCTGAGGCACAGGA
CACGGAGGACAAGGATCAGCAGAGGGGAAAGTCCTCGGCCAAATGCAAGA
TGGGAAGCGAGATGGGACGGCTGGATACAATCAGCAGTGCAGGGGAGAGC
GAGGACGAGAGTGAGAATCAAGCGCAGCTCCTGCAGGCTGTCACGGATCC
GGAAAAGGCCGCATTGGCGGCTTTCATGGCCACCGGCGATGGAGCGTATA
CGGAGGAGGCCAAAAAGGCTGCGGTAGAGGCCTACGTGGCGGCCTGTCCA
CCCGATTTCGATCCCGATTTTCCGCCAATTTCCTTGCCCGGCGAGCCCAG
ATAGAAGCTTTCTAGACCAT

BS07027.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
stops-RA 1566 CG31006-PA 228..1566 16..1354 6695 100 Plus
stops-RC 1338 CG31006-PC 1..1338 17..1354 6690 100 Plus
stops-RB 1338 CG31006-PB 1..1338 17..1354 6690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
stops-RC 2154 CG31006-RC 543..1881 16..1354 6695 100 Plus
stops-RA 1970 CG31006-RA 359..1697 16..1354 6695 100 Plus
stops-RB 2109 CG31006-RB 498..1836 16..1354 6695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31158429..31158862 1354..921 2170 100 Minus
3R 32079331 3R 31168025..31168246 237..16 1110 100 Minus
3R 32079331 3R 31161173..31161331 802..644 795 100 Minus
3R 32079331 3R 31160958..31161078 921..801 605 100 Minus
3R 32079331 3R 31166350..31166460 445..335 555 100 Minus
3R 32079331 3R 31166176..31166282 549..443 535 100 Minus
3R 32079331 3R 31167326..31167429 335..232 520 100 Minus
3R 32079331 3R 31163540..31163638 645..547 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:09:36 has no hits.

BS07027.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:21 Download gff for BS07027.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RA 221..1566 7..1354 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:58 Download gff for BS07027.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RA 352..1697 7..1354 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:20 Download gff for BS07027.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RB 496..1833 17..1354 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:21 Download gff for BS07027.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RA 352..1697 7..1354 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:10 Download gff for BS07027.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RB 499..1836 17..1354 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:10 Download gff for BS07027.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31168027..31168245 17..235 100   Minus
3R 31166176..31166279 446..549 100 <- Minus
3R 31166350..31166459 336..445 100 <- Minus
3R 31167326..31167425 236..335 100 <- Minus
3R 31158429..31158861 922..1354 100 <- Minus
3R 31160958..31161076 803..921 100 <- Minus
3R 31161173..31161329 646..802 100 <- Minus
3R 31163540..31163635 550..645 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:20 Download gff for BS07027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26993048..26993147 236..335 100 <- Minus
arm_3R 26993749..26993967 17..235 100   Minus
arm_3R 26984151..26984583 922..1354 100 <- Minus
arm_3R 26986680..26986798 803..921 100 <- Minus
arm_3R 26986895..26987051 646..802 100 <- Minus
arm_3R 26989262..26989357 550..645 100 <- Minus
arm_3R 26991898..26992001 446..549 100 <- Minus
arm_3R 26992072..26992181 336..445 100 <- Minus

BS07027.pep Sequence

Translation from 16 to 1353

> BS07027.pep
MDYIFECFFDDTFEQISRNGLQDRQSRRDVLDHLSSIIKGCSGGQNSQTD
EVAAIAVTAAMRYHRMAKEQNGQVCLMGKYHNILYIGLRTCWDWGVRDSE
VVVKLLVAIYECEKTYERIFLGALFGPHAPHFIAGWRSDFQDQHENVRAM
VYFLKHATREQLTLPVWIPRFEQERQLRFIDVPIESCGKSSPLRIALQAN
APELLLILLRYGAAPQPPDGGASVIIALLDKLIEDGRNYSFELVMCLKIL
LRNVVMIEMPFKPLLYAARREMFFDRYGRLLMDKIIGKEQVYGVPSLRHL
CRCCIRDVMRMHNQLPSGIDTLRLPKRLQRYIDLTEELEGPEAQDTEDKD
QQRGKSSAKCKMGSEMGRLDTISSAGESEDESENQAQLLQAVTDPEKAAL
AAFMATGDGAYTEEAKKAAVEAYVAACPPDFDPDFPPISLPGEPR*

BS07027.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
stops-PC 445 CG31006-PC 1..445 1..445 2332 100 Plus
stops-PA 521 CG31006-PA 77..521 1..445 2332 100 Plus
stops-PB 445 CG31006-PB 1..445 1..445 2332 100 Plus