Clone Sequence Records
BS07027.3prime Sequence
958 bp (801 high quality bases) assembled on 2006-01-06
> BS07027.3prime
ATGGTCTAGAAAGCTTCTATCTGGGCTCGCCGGGCAAGGAAATTGGCGGA
AAATCGGGATCGAAATCGGGTGGACAGGCCGCCACGTAGGCCTCTACCGC
AGCCTTTTTGGCCTCCTCCGTATACGCTCCATCGCCGGTGGCCATGAAAG
CCGCCAATGCGGCCTTTTCCGGATCCGTGACAGCCTGCAGGAGCTGCGCT
TGATTCTCACTCTCGTCCTCGCTCTCCCCTGCACTGCTGATTGTATCCAG
CCGTCCCATCTCGCTTCCCATCTTGCATTTGGCCGAGGACTTTCCCCTCT
GCTGATCCTTGTCCTCCGTGTCCTGTGCCTCAGGTCCTTCAAGCTCCTCG
GTGAGATCGATGTAGCGTTGCAGGCGCTTTGGCAACCTCAACGTGTCGAT
GCCGCTTGGCAGTTGATTGTGCATCCGCATGACGTCGCGGATACAGCAGC
GGCATAAATGACGTAGACTGGGCACTCCGTAGACCTGCTCTTTGCCGATA
ATCTTGTCCATTAAAAGGCGGCCATAGCGATCGAAGAACATTTCCCTTCG
GGCAGCGTATAAAAGGGGCTTGAAGGGCATCTCAATCATGACCACATTGC
GCAGCAGAATCTTGAGGCACATGACCAGTTCGAAGCTGTAATTGCGGCCA
TCCTCGATGAGTTTGTCGAGCAGCGCTATAATTACGGAGGCGCCTCCGTC
TGGCGGCTGCGGTGCGGCGCCGTATCTCAGCAGTATGAGCAGCAGTTCGG
GAGCGTTCGCCTGTAGGGCAATGCGAAGGGGCGAGGACTTGCCGCATGAC
TCAATGGGGACATCAATGAATCTGAGCTGTCGCTCCTGCTCGAAGCGCGG
AATCCAGACGGGCAATGTGAGCTGTTCGCGTGTGGCGTGCTTCAGAAGTA
AACATAGCCCGGACATCTCGTGCTGATCTGAAAGTCACTGCGCCAGCCGG
CGATGAAG
BS07027.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31006-PB | 1338 | CG31006-RB | 458..1338 | 897..17 | 4405 | 100 | Minus |
CG31006-PA | 1566 | CG31006-RA | 686..1566 | 897..17 | 4405 | 100 | Minus |
CG31006-PB | 1338 | CG31006-RB | 393..423 | 958..928 | 155 | 100 | Minus |
CG31006-PA | 1566 | CG31006-RA | 621..651 | 958..928 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stops-RC | 2154 | CG31006-RC | 936..1881 | 958..17 | 4630 | 99.6 | Minus |
stops-RA | 1970 | CG31006-RA | 752..1697 | 958..17 | 4630 | 99.6 | Minus |
stops-RB | 2109 | CG31006-RB | 891..1836 | 958..17 | 4630 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:01:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31158429..31158862 | 17..450 | 2170 | 100 | Plus |
3R | 32079331 | 3R | 31161173..31161331 | 569..727 | 795 | 100 | Plus |
3R | 32079331 | 3R | 31160958..31161078 | 450..570 | 605 | 100 | Plus |
3R | 32079331 | 3R | 31163540..31163638 | 726..824 | 495 | 100 | Plus |
3R | 32079331 | 3R | 31166176..31166272 | 822..916 | 385 | 97.9 | Plus |
Blast to na_te.dros performed 2015-02-02 20:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 134..175 | 857..898 | 111 | 73.8 | Plus |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6704..6745 | 857..898 | 111 | 73.8 | Plus |
BS07027.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:36 Download gff for
BS07027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31006-PA | 621..1566 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:03 Download gff for
BS07027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31006-PA | 621..1566 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:02:37 Download gff for
BS07027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RB | 888..1833 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:13:01 Download gff for
BS07027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RB | 891..1836 | 17..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:13:01 Download gff for
BS07027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31166176..31166279 | 822..922 | 97 | <- | Plus |
3R | 31166350..31166386 | 923..958 | 97 | | Plus |
3R | 31158429..31158861 | 17..449 | 100 | <- | Plus |
3R | 31160958..31161076 | 450..568 | 100 | <- | Plus |
3R | 31161173..31161329 | 569..725 | 100 | <- | Plus |
3R | 31163540..31163635 | 726..821 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:02:37 Download gff for
BS07027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26984151..26984583 | 17..449 | 100 | <- | Plus |
arm_3R | 26986680..26986798 | 450..568 | 100 | <- | Plus |
arm_3R | 26986895..26987051 | 569..725 | 100 | <- | Plus |
arm_3R | 26989262..26989357 | 726..821 | 100 | <- | Plus |
arm_3R | 26991898..26992001 | 822..922 | 97 | <- | Plus |
arm_3R | 26992072..26992108 | 923..958 | 97 | | Plus |
BS07027.5prime Sequence
850 bp (799 high quality bases) assembled on 2006-01-06
> BS07027.5prime
GAAGTTATCAGTCGACATGGACTACATCTTCGAGTGCTTCTTCGACGACA
CCTTCGAGCAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGA
GATGTCCTCGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCA
GAACTCGCAGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGA
GGTACCACCGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGC
AAGTATCACAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGG
AGTCCGGGACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGT
GCGAGAAGACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACAT
GCTCCGCACTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGA
GAATGTCCGGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGC
TCACATTGCCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGA
TTCATTGATGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCAT
TGCCCTACAGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACG
GCGCCGCACCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTG
CTCGACAAACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCAT
GTGCCTCAAGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCA
AGCCCCTTTTATACGCTGCCCGAAGGGAAATGTTCTTCGATCGCTATGGC
BS07027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31006-PA | 1566 | CG31006-RA | 228..1062 | 16..850 | 4175 | 100 | Plus |
CG31006-PB | 1338 | CG31006-RB | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stops-RC | 2154 | CG31006-RC | 543..1377 | 16..850 | 4175 | 100 | Plus |
stops-RA | 1970 | CG31006-RA | 359..1193 | 16..850 | 4175 | 100 | Plus |
stops-RB | 2109 | CG31006-RB | 498..1332 | 16..850 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31168025..31168246 | 237..16 | 1110 | 100 | Minus |
3R | 32079331 | 3R | 31161173..31161331 | 802..644 | 795 | 100 | Minus |
3R | 32079331 | 3R | 31166350..31166460 | 445..335 | 555 | 100 | Minus |
3R | 32079331 | 3R | 31166176..31166282 | 549..443 | 535 | 100 | Minus |
3R | 32079331 | 3R | 31167326..31167429 | 335..232 | 520 | 100 | Minus |
3R | 32079331 | 3R | 31163540..31163638 | 645..547 | 495 | 100 | Minus |
3R | 32079331 | 3R | 31161029..31161078 | 850..801 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:16:55 has no hits.
BS07027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:37 Download gff for
BS07027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31006-PA | 221..1062 | 7..850 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:04 Download gff for
BS07027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31006-PA | 221..1062 | 7..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:57:59 Download gff for
BS07027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RB | 488..1329 | 7..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:15:11 Download gff for
BS07027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RB | 491..1332 | 7..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:15:11 Download gff for
BS07027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31168027..31168253 | 7..235 | 98 | | Minus |
3R | 31161029..31161076 | 803..850 | 100 | <- | Minus |
3R | 31161173..31161329 | 646..802 | 100 | <- | Minus |
3R | 31163540..31163635 | 550..645 | 100 | <- | Minus |
3R | 31166176..31166279 | 446..549 | 100 | <- | Minus |
3R | 31166350..31166459 | 336..445 | 100 | <- | Minus |
3R | 31167326..31167425 | 236..335 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:57:59 Download gff for
BS07027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26986751..26986798 | 803..850 | 100 | <- | Minus |
arm_3R | 26986895..26987051 | 646..802 | 100 | <- | Minus |
arm_3R | 26989262..26989357 | 550..645 | 100 | <- | Minus |
arm_3R | 26991898..26992001 | 446..549 | 100 | <- | Minus |
arm_3R | 26992072..26992181 | 336..445 | 100 | <- | Minus |
arm_3R | 26993048..26993147 | 236..335 | 100 | <- | Minus |
arm_3R | 26993749..26993975 | 7..235 | 98 | | Minus |
BS07027.complete Sequence
1370 bp (1370 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635695
> BS07027.complete
GAAGTTATCAGTCGACATGGACTACATCTTCGAGTGCTTCTTCGACGACA
CCTTCGAGCAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGA
GATGTCCTCGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCA
GAACTCGCAGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGA
GGTACCACCGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGC
AAGTATCACAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGG
AGTCCGGGACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGT
GCGAGAAGACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACAT
GCTCCGCACTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGA
GAATGTCCGGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGC
TCACATTGCCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGA
TTCATTGATGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCAT
TGCCCTACAGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACG
GCGCCGCACCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTG
CTCGACAAACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCAT
GTGCCTCAAGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCA
AGCCCCTTTTATACGCTGCCCGAAGGGAAATGTTCTTCGATCGCTATGGC
CGCCTTTTAATGGACAAGATTATCGGCAAAGAGCAGGTCTACGGAGTGCC
CAGTCTACGTCATTTATGCCGCTGCTGTATCCGCGACGTCATGCGGATGC
ACAATCAACTGCCAAGCGGCATCGACACGTTGAGGTTGCCAAAGCGCCTG
CAACGCTACATCGATCTCACCGAGGAGCTTGAAGGACCTGAGGCACAGGA
CACGGAGGACAAGGATCAGCAGAGGGGAAAGTCCTCGGCCAAATGCAAGA
TGGGAAGCGAGATGGGACGGCTGGATACAATCAGCAGTGCAGGGGAGAGC
GAGGACGAGAGTGAGAATCAAGCGCAGCTCCTGCAGGCTGTCACGGATCC
GGAAAAGGCCGCATTGGCGGCTTTCATGGCCACCGGCGATGGAGCGTATA
CGGAGGAGGCCAAAAAGGCTGCGGTAGAGGCCTACGTGGCGGCCTGTCCA
CCCGATTTCGATCCCGATTTTCCGCCAATTTCCTTGCCCGGCGAGCCCAG
ATAGAAGCTTTCTAGACCAT
BS07027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stops-RA | 1566 | CG31006-PA | 228..1566 | 16..1354 | 6695 | 100 | Plus |
stops-RC | 1338 | CG31006-PC | 1..1338 | 17..1354 | 6690 | 100 | Plus |
stops-RB | 1338 | CG31006-PB | 1..1338 | 17..1354 | 6690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stops-RC | 2154 | CG31006-RC | 543..1881 | 16..1354 | 6695 | 100 | Plus |
stops-RA | 1970 | CG31006-RA | 359..1697 | 16..1354 | 6695 | 100 | Plus |
stops-RB | 2109 | CG31006-RB | 498..1836 | 16..1354 | 6695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31158429..31158862 | 1354..921 | 2170 | 100 | Minus |
3R | 32079331 | 3R | 31168025..31168246 | 237..16 | 1110 | 100 | Minus |
3R | 32079331 | 3R | 31161173..31161331 | 802..644 | 795 | 100 | Minus |
3R | 32079331 | 3R | 31160958..31161078 | 921..801 | 605 | 100 | Minus |
3R | 32079331 | 3R | 31166350..31166460 | 445..335 | 555 | 100 | Minus |
3R | 32079331 | 3R | 31166176..31166282 | 549..443 | 535 | 100 | Minus |
3R | 32079331 | 3R | 31167326..31167429 | 335..232 | 520 | 100 | Minus |
3R | 32079331 | 3R | 31163540..31163638 | 645..547 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:09:36 has no hits.
BS07027.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:21 Download gff for
BS07027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RA | 221..1566 | 7..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:58 Download gff for
BS07027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RA | 352..1697 | 7..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:20 Download gff for
BS07027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RB | 496..1833 | 17..1354 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:21 Download gff for
BS07027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RA | 352..1697 | 7..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:10 Download gff for
BS07027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RB | 499..1836 | 17..1354 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:10 Download gff for
BS07027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31168027..31168245 | 17..235 | 100 | | Minus |
3R | 31166176..31166279 | 446..549 | 100 | <- | Minus |
3R | 31166350..31166459 | 336..445 | 100 | <- | Minus |
3R | 31167326..31167425 | 236..335 | 100 | <- | Minus |
3R | 31158429..31158861 | 922..1354 | 100 | <- | Minus |
3R | 31160958..31161076 | 803..921 | 100 | <- | Minus |
3R | 31161173..31161329 | 646..802 | 100 | <- | Minus |
3R | 31163540..31163635 | 550..645 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:20 Download gff for
BS07027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26993048..26993147 | 236..335 | 100 | <- | Minus |
arm_3R | 26993749..26993967 | 17..235 | 100 | | Minus |
arm_3R | 26984151..26984583 | 922..1354 | 100 | <- | Minus |
arm_3R | 26986680..26986798 | 803..921 | 100 | <- | Minus |
arm_3R | 26986895..26987051 | 646..802 | 100 | <- | Minus |
arm_3R | 26989262..26989357 | 550..645 | 100 | <- | Minus |
arm_3R | 26991898..26992001 | 446..549 | 100 | <- | Minus |
arm_3R | 26992072..26992181 | 336..445 | 100 | <- | Minus |
BS07027.pep Sequence
Translation from 16 to 1353
> BS07027.pep
MDYIFECFFDDTFEQISRNGLQDRQSRRDVLDHLSSIIKGCSGGQNSQTD
EVAAIAVTAAMRYHRMAKEQNGQVCLMGKYHNILYIGLRTCWDWGVRDSE
VVVKLLVAIYECEKTYERIFLGALFGPHAPHFIAGWRSDFQDQHENVRAM
VYFLKHATREQLTLPVWIPRFEQERQLRFIDVPIESCGKSSPLRIALQAN
APELLLILLRYGAAPQPPDGGASVIIALLDKLIEDGRNYSFELVMCLKIL
LRNVVMIEMPFKPLLYAARREMFFDRYGRLLMDKIIGKEQVYGVPSLRHL
CRCCIRDVMRMHNQLPSGIDTLRLPKRLQRYIDLTEELEGPEAQDTEDKD
QQRGKSSAKCKMGSEMGRLDTISSAGESEDESENQAQLLQAVTDPEKAAL
AAFMATGDGAYTEEAKKAAVEAYVAACPPDFDPDFPPISLPGEPR*
BS07027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stops-PC | 445 | CG31006-PC | 1..445 | 1..445 | 2332 | 100 | Plus |
stops-PA | 521 | CG31006-PA | 77..521 | 1..445 | 2332 | 100 | Plus |
stops-PB | 445 | CG31006-PB | 1..445 | 1..445 | 2332 | 100 | Plus |