Clone Sequence Records
BS07029.3prime Sequence
957 bp (817 high quality bases) assembled on 2006-01-06
> BS07029.3prime
ATGGTCTAGAAAGCTTCTAACTGATCTCGTACTGATATGCATCGTCCGAG
TCCTCGCCGCTGGATAAGTCCCGCTTACGGCGACGCTGCTCCCGCTTGCT
GAGCTTCTTGGCGGCTGGCGCCACTTCCGGTTCTGGCGGCGCAAGGGGCT
CCTCCTCGGGGAGCTCTTCCTCGATGGCGGCCGCATCCTCGTCCGGCTCG
TTGGCCTCCTCCTCGGCCCGCTTCTGCGTCTTGACCAGCTCGCAGAGATA
CTTGTAGCGCACCAGGCACTCCTCCTTGGTCTTCTCCGGCACACTGTTGG
CGATCTTCTGCCAACGGTCTCCGCCGGCCGTCTTCCGGTACTTGACTATC
GCCGCCTCCAGGGCGCGCTGCTGCTCTTGCGTCCAGTTGGTCTCCGGAAT
TAGCATGCTCTTCTCGGCTGAAGCTCCTGCATTTGCGGCTGCCTTCTTCA
CTTTTTCCTTACGCTGCGCCTGCTGGGACTCCTGGACGAGAGCCTCGGCC
ACGCTGTCAGTTTGGCCGGGAATGCGGTAGCCATTCTCCTTCATCTTGGC
CGCCATAAAGGTCACCTCCTGAACGCTGCGGTTCATCGACTCGGCGATAG
TGTTCCAGCGGCTGCCAGCTCCGCCAGGATACTTTTTTACCAAGCGAATC
AGCTCGGTAAGATCCTCGTCAGTCCAGAAGCCGCCGCTCACCGTGCTCTT
CTGGGAAGCTGGACGAACTGCATCGTCATCTGTCAATTCGCGAGTCTGAA
TCTGCGAATAGCCGCGCAATTCTTCCTCGGTCTTCTCTGGAGCCTTGCTG
TTCTGCTTGCGCTTCCGCAGATTCTCCTTGTGCTCCTTGCGAAAGCGCGC
CTGCTCCTCGGCCTCCCGTTCCAGGTCCTCCTGACGACGGACGGCCTCCA
GTTCCTGCCTGCGCTTCTCCAGGGCGAGTTCTTTTAGCTCGTTGGCCTTG
CTGAATC
BS07029.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7556-PA | 1569 | CG7556-RA | 629..1569 | 957..17 | 4630 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7556-RB | 2893 | CG7556-RB | 780..1720 | 957..17 | 4660 | 99.7 | Minus |
CG7556-RA | 2005 | CG7556-RA | 780..1720 | 957..17 | 4660 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19177282..19177964 | 17..699 | 3415 | 100 | Plus |
X | 23542271 | X | 19178040..19178247 | 698..905 | 1010 | 99 | Plus |
X | 23542271 | X | 19178992..19179051 | 898..957 | 255 | 95 | Plus |
Blast to na_te.dros performed 2015-02-10 17:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 10324..10418 | 118..25 | 148 | 63.2 | Minus |
BS07029.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:40 Download gff for
BS07029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-PA | 629..1569 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:09 Download gff for
BS07029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-PA | 629..1569 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:31:40 Download gff for
BS07029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-RA | 780..1720 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:45 Download gff for
BS07029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-RA | 780..1720 | 17..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:45 Download gff for
BS07029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19177282..19177962 | 17..697 | 100 | <- | Plus |
X | 19178040..19178247 | 698..905 | 99 | <- | Plus |
X | 19179000..19179051 | 906..957 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:31:40 Download gff for
BS07029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19071315..19071995 | 17..697 | 100 | <- | Plus |
arm_X | 19072073..19072280 | 698..905 | 99 | <- | Plus |
arm_X | 19073033..19073084 | 906..957 | 98 | | Plus |
BS07029.5prime Sequence
828 bp (760 high quality bases) assembled on 2006-01-06
> BS07029.5prime
GAAGTTATCAGTCGACATGATGATGCGACCGGAGCTGACGCTGGCCGGCC
TCCTGCTGCTCTGCGCCACTGGCGCCAGCGCCTGGCACTCGGAGGAACTG
GAGATCTTTGACTTGGTCGAGGAGGTAAACCGCAACTTCTACGAGTTCAT
GGGCATCAACCAAACGGCAACGGGCGCCGAGGTGAAGCGCGCCTTCCGCA
CCCTGTCCATTGTCCTGCATCCGGACAAGAATCCGGCCGAGGATGCCAAC
ATCCAGTTCCGCAACCTCGTTTCCATCTACGAGGTTCTCAAAGATCCGTC
GCGCCGAGAGAAGTACGACCGGGTACTGAAGGAGGGCATGCCCAACTGGA
AGTCTGCCCTCTACTATTACCGACGTATGCGCAAGATCGGGCTCTATGAG
GGCGCCTTTATCCTCTTCCTGATAACCACCGTGGGCCAGTATCTATTCGC
CTGGGCGGCCTACCTCGAGAAGAAGTACACCGCCGAACAGGTCTTTGGCA
CCAAGCTGAAGAAGCTGCAGAAGAAGAACAAGAACATCGACATGGACGTG
ATCCTTAGCGAGATACCGATGCCCTCGCTACTCAACACCCTGCCCATCCA
GATCCCCTTGGCCCTGTGGAACCTGCCGCGCACCATCAAGAACGGATTCA
GCAAGGCCAACGAGCTAAAGGAACTCGCCCTGGAGAAGCGCAGGCAGGAA
CTGGAGGCCGTCCGTCGTCAGGAGGAACTGGAACGGGAGGCCGAGGAGCA
GGCGCGCCTTCGCAAGGAGCACAAGGAGAATCTGCGGAAGCGCAAGCAGA
ACAGCAAGGCTCCAGAGAAGACCGAGGA
BS07029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7556-PA | 1569 | CG7556-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7556-RB | 2893 | CG7556-RB | 152..963 | 17..828 | 4060 | 100 | Plus |
CG7556-RA | 2005 | CG7556-RA | 152..963 | 17..828 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19178992..19179679 | 704..17 | 3410 | 99.7 | Minus |
X | 23542271 | X | 19178116..19178247 | 828..697 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:56:04 has no hits.
BS07029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:41 Download gff for
BS07029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:10 Download gff for
BS07029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:17 Download gff for
BS07029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-RA | 142..962 | 8..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:31 Download gff for
BS07029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-RA | 142..962 | 8..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:31 Download gff for
BS07029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19178117..19178247 | 697..827 | 100 | <- | Minus |
X | 19179000..19179689 | 8..696 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:17 Download gff for
BS07029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19072150..19072280 | 697..827 | 100 | <- | Minus |
arm_X | 19073033..19073722 | 8..696 | 99 | | Minus |
BS07029.complete Sequence
1601 bp (1601 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635696
> BS07029.complete
GAAGTTATCAGTCGACATGATGATGCGACCGGAGCTGACGCTGGCCGGCC
TCCTGCTGCTCTGCGCCACTGGCGCCAGCGCCTGGCACTCGGAGGAACTG
GAGATCTTTGACTTGGTCGAGGAGGTAAACCGCAACTTCTACGAGTTCAT
GGGCATCAACCAAACGGCAACGGGCGCCGAGGTGAAGCGCGCCTTCCGCA
CCCTGTCCATTGTCCTGCATCCGGACAAGAATCCGGCCGAGGATGCCAAC
ATCCAGTTCCGCAACCTCGTTTCCATCTACGAGGTTCTCAAAGATCCGTC
GCGCCGAGAGAAGTACGACCGGGTACTGAAGGAGGGCATGCCCAACTGGA
AGTCTGCCCTCTACTATTACCGACGTATGCGCAAGATCGGGCTCTATGAG
GGCGCCTTTATCCTCTTCCTGATAACCACCGTGGGCCAGTATCTATTCGC
CTGGGCGGCCTACCTCGAGAAGAAGTACACCGCCGAACAGGTCTTTGGCA
CCAAGCTGAAGAAGCTGCAGAAGAAGAACAAGAACATCGACATGGACGTG
ATCCTTAGCGAGATACCGATGCCCTCGCTACTCAACACCCTGCCCATCCA
GATCCCCTTGGCCCTGTGGAACCTGCCGCGCACCATCAAGAACGGATTCA
GCAAGGCCAACGAGCTAAAGGAACTCGCCCTGGAGAAGCGCAGGCAGGAA
CTGGAGGCCGTCCGTCGTCAGGAGGAACTGGAACGGGAGGCCGAGGAGCA
GGCGCGCCTTCGCAAGGAGCACAAGGAGAATCTGCGGAAGCGCAAGCAGA
ACAGCAAGGCTCCAGAGAAGACCGAGGAAGAATTGCGCGGCTATTCGCAG
ATTCAGACTCGCGAATTGACAGATGACGATGCAGTTCGTCCAGCTTCCCA
GAAGAGCACGGTGAGCGGCGGCTTCTGGACTGACGAGGATCTTACCGAGC
TGATTCGCTTGGTAAAAAAGTATCCTGGCGGAGCTGGCAGCCGCTGGAAC
ACTATCGCCGAGTCGATGAACCGCAGCGTTCAGGAGGTGACCTTTATGGC
GGCCAAGATGAAGGAGAATGGCTACCGCATTCCCGGCCAAACTGACAGCG
TGGCCGAGGCTCTCGTCCAGGAGTCCCAGCAGGCGCAGCGTAAGGAAAAA
GTGAAGAAGGCAGCCGCAAATGCAGGAGCTTCAGCCGAGAAGAGCATGCT
AATTCCGGAGACCAACTGGACGCAAGAGCAGCAGCGCGCCCTGGAGGCGG
CGATAGTCAAGTACCGGAAGACGGCCGGCGGAGACCGTTGGCAGAAGATC
GCCAACAGTGTGCCGGAGAAGACCAAGGAGGAGTGCCTGGTGCGCTACAA
GTATCTCTGCGAGCTGGTCAAGACGCAGAAGCGGGCCGAGGAGGAGGCCA
ACGAGCCGGACGAGGATGCGGCCGCCATCGAGGAAGAGCTCCCCGAGGAG
GAGCCCCTTGCGCCGCCAGAACCGGAAGTGGCGCCAGCCGCCAAGAAGCT
CAGCAAGCGGGAGCAGCGTCGCCGTAAGCGGGACTTATCCAGCGGCGAGG
ACTCGGACGATGCATATCAGTACGAGATCAGTTAGAAGCTTTCTAGACCA
T
BS07029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7556-RB | 1569 | CG7556-PB | 1..1569 | 17..1585 | 7845 | 100 | Plus |
CG7556-RA | 1569 | CG7556-PA | 1..1569 | 17..1585 | 7845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7556-RB | 2893 | CG7556-RB | 152..1720 | 17..1585 | 7845 | 100 | Plus |
CG7556-RA | 2005 | CG7556-RA | 152..1720 | 17..1585 | 7845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19177282..19177964 | 1585..903 | 3415 | 100 | Minus |
X | 23542271 | X | 19178992..19179679 | 704..17 | 3410 | 99.7 | Minus |
X | 23542271 | X | 19178040..19178247 | 904..697 | 1040 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 15:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 10324..10418 | 1484..1577 | 148 | 63.2 | Plus |
BS07029.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:24 Download gff for
BS07029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-RA | 1..1569 | 17..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:01 Download gff for
BS07029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-RA | 267..1845 | 8..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:19 Download gff for
BS07029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-RA | 152..1720 | 17..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:24 Download gff for
BS07029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-RA | 267..1845 | 8..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:05 Download gff for
BS07029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7556-RA | 152..1720 | 17..1585 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:05 Download gff for
BS07029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19177282..19177962 | 905..1585 | 100 | <- | Minus |
X | 19178040..19178247 | 697..904 | 100 | <- | Minus |
X | 19179000..19179679 | 17..696 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:19 Download gff for
BS07029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19071315..19071995 | 905..1585 | 100 | <- | Minus |
arm_X | 19072073..19072280 | 697..904 | 100 | <- | Minus |
arm_X | 19073033..19073712 | 17..696 | 100 | | Minus |
BS07029.pep Sequence
Translation from 16 to 1584
> BS07029.pep
MMMRPELTLAGLLLLCATGASAWHSEELEIFDLVEEVNRNFYEFMGINQT
ATGAEVKRAFRTLSIVLHPDKNPAEDANIQFRNLVSIYEVLKDPSRREKY
DRVLKEGMPNWKSALYYYRRMRKIGLYEGAFILFLITTVGQYLFAWAAYL
EKKYTAEQVFGTKLKKLQKKNKNIDMDVILSEIPMPSLLNTLPIQIPLAL
WNLPRTIKNGFSKANELKELALEKRRQELEAVRRQEELEREAEEQARLRK
EHKENLRKRKQNSKAPEKTEEELRGYSQIQTRELTDDDAVRPASQKSTVS
GGFWTDEDLTELIRLVKKYPGGAGSRWNTIAESMNRSVQEVTFMAAKMKE
NGYRIPGQTDSVAEALVQESQQAQRKEKVKKAAANAGASAEKSMLIPETN
WTQEQQRALEAAIVKYRKTAGGDRWQKIANSVPEKTKEECLVRYKYLCEL
VKTQKRAEEEANEPDEDAAAIEEELPEEEPLAPPEPEVAPAAKKLSKREQ
RRRKRDLSSGEDSDDAYQYEIS*
BS07029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7556-PB | 522 | CG7556-PB | 1..522 | 1..522 | 2661 | 100 | Plus |
CG7556-PA | 522 | CG7556-PA | 1..522 | 1..522 | 2661 | 100 | Plus |
CG5001-PC | 346 | CG5001-PC | 1..72 | 37..108 | 169 | 40.3 | Plus |
CG5001-PD | 350 | CG5001-PD | 1..72 | 37..108 | 169 | 40.3 | Plus |
CG5001-PA | 350 | CG5001-PA | 1..72 | 37..108 | 169 | 40.3 | Plus |