Clone BS07029 Report

Search the DGRC for BS07029

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG7556-RA
Protein status:BS07029.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07029.3prime Sequence

957 bp (817 high quality bases) assembled on 2006-01-06

> BS07029.3prime
ATGGTCTAGAAAGCTTCTAACTGATCTCGTACTGATATGCATCGTCCGAG
TCCTCGCCGCTGGATAAGTCCCGCTTACGGCGACGCTGCTCCCGCTTGCT
GAGCTTCTTGGCGGCTGGCGCCACTTCCGGTTCTGGCGGCGCAAGGGGCT
CCTCCTCGGGGAGCTCTTCCTCGATGGCGGCCGCATCCTCGTCCGGCTCG
TTGGCCTCCTCCTCGGCCCGCTTCTGCGTCTTGACCAGCTCGCAGAGATA
CTTGTAGCGCACCAGGCACTCCTCCTTGGTCTTCTCCGGCACACTGTTGG
CGATCTTCTGCCAACGGTCTCCGCCGGCCGTCTTCCGGTACTTGACTATC
GCCGCCTCCAGGGCGCGCTGCTGCTCTTGCGTCCAGTTGGTCTCCGGAAT
TAGCATGCTCTTCTCGGCTGAAGCTCCTGCATTTGCGGCTGCCTTCTTCA
CTTTTTCCTTACGCTGCGCCTGCTGGGACTCCTGGACGAGAGCCTCGGCC
ACGCTGTCAGTTTGGCCGGGAATGCGGTAGCCATTCTCCTTCATCTTGGC
CGCCATAAAGGTCACCTCCTGAACGCTGCGGTTCATCGACTCGGCGATAG
TGTTCCAGCGGCTGCCAGCTCCGCCAGGATACTTTTTTACCAAGCGAATC
AGCTCGGTAAGATCCTCGTCAGTCCAGAAGCCGCCGCTCACCGTGCTCTT
CTGGGAAGCTGGACGAACTGCATCGTCATCTGTCAATTCGCGAGTCTGAA
TCTGCGAATAGCCGCGCAATTCTTCCTCGGTCTTCTCTGGAGCCTTGCTG
TTCTGCTTGCGCTTCCGCAGATTCTCCTTGTGCTCCTTGCGAAAGCGCGC
CTGCTCCTCGGCCTCCCGTTCCAGGTCCTCCTGACGACGGACGGCCTCCA
GTTCCTGCCTGCGCTTCTCCAGGGCGAGTTCTTTTAGCTCGTTGGCCTTG
CTGAATC

BS07029.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7556-PA 1569 CG7556-RA 629..1569 957..17 4630 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7556-RB 2893 CG7556-RB 780..1720 957..17 4660 99.7 Minus
CG7556-RA 2005 CG7556-RA 780..1720 957..17 4660 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19177282..19177964 17..699 3415 100 Plus
X 23542271 X 19178040..19178247 698..905 1010 99 Plus
X 23542271 X 19178992..19179051 898..957 255 95 Plus
Blast to na_te.dros performed 2015-02-10 17:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10324..10418 118..25 148 63.2 Minus

BS07029.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:40 Download gff for BS07029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7556-PA 629..1569 17..957 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:09 Download gff for BS07029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7556-PA 629..1569 17..957 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:31:40 Download gff for BS07029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 780..1720 17..957 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:45 Download gff for BS07029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 780..1720 17..957 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:45 Download gff for BS07029.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19177282..19177962 17..697 100 <- Plus
X 19178040..19178247 698..905 99 <- Plus
X 19179000..19179051 906..957 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:31:40 Download gff for BS07029.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19071315..19071995 17..697 100 <- Plus
arm_X 19072073..19072280 698..905 99 <- Plus
arm_X 19073033..19073084 906..957 98   Plus

BS07029.5prime Sequence

828 bp (760 high quality bases) assembled on 2006-01-06

> BS07029.5prime
GAAGTTATCAGTCGACATGATGATGCGACCGGAGCTGACGCTGGCCGGCC
TCCTGCTGCTCTGCGCCACTGGCGCCAGCGCCTGGCACTCGGAGGAACTG
GAGATCTTTGACTTGGTCGAGGAGGTAAACCGCAACTTCTACGAGTTCAT
GGGCATCAACCAAACGGCAACGGGCGCCGAGGTGAAGCGCGCCTTCCGCA
CCCTGTCCATTGTCCTGCATCCGGACAAGAATCCGGCCGAGGATGCCAAC
ATCCAGTTCCGCAACCTCGTTTCCATCTACGAGGTTCTCAAAGATCCGTC
GCGCCGAGAGAAGTACGACCGGGTACTGAAGGAGGGCATGCCCAACTGGA
AGTCTGCCCTCTACTATTACCGACGTATGCGCAAGATCGGGCTCTATGAG
GGCGCCTTTATCCTCTTCCTGATAACCACCGTGGGCCAGTATCTATTCGC
CTGGGCGGCCTACCTCGAGAAGAAGTACACCGCCGAACAGGTCTTTGGCA
CCAAGCTGAAGAAGCTGCAGAAGAAGAACAAGAACATCGACATGGACGTG
ATCCTTAGCGAGATACCGATGCCCTCGCTACTCAACACCCTGCCCATCCA
GATCCCCTTGGCCCTGTGGAACCTGCCGCGCACCATCAAGAACGGATTCA
GCAAGGCCAACGAGCTAAAGGAACTCGCCCTGGAGAAGCGCAGGCAGGAA
CTGGAGGCCGTCCGTCGTCAGGAGGAACTGGAACGGGAGGCCGAGGAGCA
GGCGCGCCTTCGCAAGGAGCACAAGGAGAATCTGCGGAAGCGCAAGCAGA
ACAGCAAGGCTCCAGAGAAGACCGAGGA

BS07029.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7556-PA 1569 CG7556-RA 1..812 17..828 4060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7556-RB 2893 CG7556-RB 152..963 17..828 4060 100 Plus
CG7556-RA 2005 CG7556-RA 152..963 17..828 4060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19178992..19179679 704..17 3410 99.7 Minus
X 23542271 X 19178116..19178247 828..697 660 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:56:04 has no hits.

BS07029.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:41 Download gff for BS07029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7556-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:10 Download gff for BS07029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7556-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:17 Download gff for BS07029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 142..962 8..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:31 Download gff for BS07029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 142..962 8..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:31 Download gff for BS07029.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19178117..19178247 697..827 100 <- Minus
X 19179000..19179689 8..696 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:17 Download gff for BS07029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19072150..19072280 697..827 100 <- Minus
arm_X 19073033..19073722 8..696 99   Minus

BS07029.complete Sequence

1601 bp (1601 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635696

> BS07029.complete
GAAGTTATCAGTCGACATGATGATGCGACCGGAGCTGACGCTGGCCGGCC
TCCTGCTGCTCTGCGCCACTGGCGCCAGCGCCTGGCACTCGGAGGAACTG
GAGATCTTTGACTTGGTCGAGGAGGTAAACCGCAACTTCTACGAGTTCAT
GGGCATCAACCAAACGGCAACGGGCGCCGAGGTGAAGCGCGCCTTCCGCA
CCCTGTCCATTGTCCTGCATCCGGACAAGAATCCGGCCGAGGATGCCAAC
ATCCAGTTCCGCAACCTCGTTTCCATCTACGAGGTTCTCAAAGATCCGTC
GCGCCGAGAGAAGTACGACCGGGTACTGAAGGAGGGCATGCCCAACTGGA
AGTCTGCCCTCTACTATTACCGACGTATGCGCAAGATCGGGCTCTATGAG
GGCGCCTTTATCCTCTTCCTGATAACCACCGTGGGCCAGTATCTATTCGC
CTGGGCGGCCTACCTCGAGAAGAAGTACACCGCCGAACAGGTCTTTGGCA
CCAAGCTGAAGAAGCTGCAGAAGAAGAACAAGAACATCGACATGGACGTG
ATCCTTAGCGAGATACCGATGCCCTCGCTACTCAACACCCTGCCCATCCA
GATCCCCTTGGCCCTGTGGAACCTGCCGCGCACCATCAAGAACGGATTCA
GCAAGGCCAACGAGCTAAAGGAACTCGCCCTGGAGAAGCGCAGGCAGGAA
CTGGAGGCCGTCCGTCGTCAGGAGGAACTGGAACGGGAGGCCGAGGAGCA
GGCGCGCCTTCGCAAGGAGCACAAGGAGAATCTGCGGAAGCGCAAGCAGA
ACAGCAAGGCTCCAGAGAAGACCGAGGAAGAATTGCGCGGCTATTCGCAG
ATTCAGACTCGCGAATTGACAGATGACGATGCAGTTCGTCCAGCTTCCCA
GAAGAGCACGGTGAGCGGCGGCTTCTGGACTGACGAGGATCTTACCGAGC
TGATTCGCTTGGTAAAAAAGTATCCTGGCGGAGCTGGCAGCCGCTGGAAC
ACTATCGCCGAGTCGATGAACCGCAGCGTTCAGGAGGTGACCTTTATGGC
GGCCAAGATGAAGGAGAATGGCTACCGCATTCCCGGCCAAACTGACAGCG
TGGCCGAGGCTCTCGTCCAGGAGTCCCAGCAGGCGCAGCGTAAGGAAAAA
GTGAAGAAGGCAGCCGCAAATGCAGGAGCTTCAGCCGAGAAGAGCATGCT
AATTCCGGAGACCAACTGGACGCAAGAGCAGCAGCGCGCCCTGGAGGCGG
CGATAGTCAAGTACCGGAAGACGGCCGGCGGAGACCGTTGGCAGAAGATC
GCCAACAGTGTGCCGGAGAAGACCAAGGAGGAGTGCCTGGTGCGCTACAA
GTATCTCTGCGAGCTGGTCAAGACGCAGAAGCGGGCCGAGGAGGAGGCCA
ACGAGCCGGACGAGGATGCGGCCGCCATCGAGGAAGAGCTCCCCGAGGAG
GAGCCCCTTGCGCCGCCAGAACCGGAAGTGGCGCCAGCCGCCAAGAAGCT
CAGCAAGCGGGAGCAGCGTCGCCGTAAGCGGGACTTATCCAGCGGCGAGG
ACTCGGACGATGCATATCAGTACGAGATCAGTTAGAAGCTTTCTAGACCA
T

BS07029.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7556-RB 1569 CG7556-PB 1..1569 17..1585 7845 100 Plus
CG7556-RA 1569 CG7556-PA 1..1569 17..1585 7845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7556-RB 2893 CG7556-RB 152..1720 17..1585 7845 100 Plus
CG7556-RA 2005 CG7556-RA 152..1720 17..1585 7845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19177282..19177964 1585..903 3415 100 Minus
X 23542271 X 19178992..19179679 704..17 3410 99.7 Minus
X 23542271 X 19178040..19178247 904..697 1040 100 Minus
Blast to na_te.dros performed 2014-11-27 15:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10324..10418 1484..1577 148 63.2 Plus

BS07029.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:24 Download gff for BS07029.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 1..1569 17..1585 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:01 Download gff for BS07029.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 267..1845 8..1585 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:19 Download gff for BS07029.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 152..1720 17..1585 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:24 Download gff for BS07029.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 267..1845 8..1585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:05 Download gff for BS07029.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 152..1720 17..1585 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:05 Download gff for BS07029.complete
Subject Subject Range Query Range Percent Splice Strand
X 19177282..19177962 905..1585 100 <- Minus
X 19178040..19178247 697..904 100 <- Minus
X 19179000..19179679 17..696 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:19 Download gff for BS07029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19071315..19071995 905..1585 100 <- Minus
arm_X 19072073..19072280 697..904 100 <- Minus
arm_X 19073033..19073712 17..696 100   Minus

BS07029.pep Sequence

Translation from 16 to 1584

> BS07029.pep
MMMRPELTLAGLLLLCATGASAWHSEELEIFDLVEEVNRNFYEFMGINQT
ATGAEVKRAFRTLSIVLHPDKNPAEDANIQFRNLVSIYEVLKDPSRREKY
DRVLKEGMPNWKSALYYYRRMRKIGLYEGAFILFLITTVGQYLFAWAAYL
EKKYTAEQVFGTKLKKLQKKNKNIDMDVILSEIPMPSLLNTLPIQIPLAL
WNLPRTIKNGFSKANELKELALEKRRQELEAVRRQEELEREAEEQARLRK
EHKENLRKRKQNSKAPEKTEEELRGYSQIQTRELTDDDAVRPASQKSTVS
GGFWTDEDLTELIRLVKKYPGGAGSRWNTIAESMNRSVQEVTFMAAKMKE
NGYRIPGQTDSVAEALVQESQQAQRKEKVKKAAANAGASAEKSMLIPETN
WTQEQQRALEAAIVKYRKTAGGDRWQKIANSVPEKTKEECLVRYKYLCEL
VKTQKRAEEEANEPDEDAAAIEEELPEEEPLAPPEPEVAPAAKKLSKREQ
RRRKRDLSSGEDSDDAYQYEIS*

BS07029.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7556-PB 522 CG7556-PB 1..522 1..522 2661 100 Plus
CG7556-PA 522 CG7556-PA 1..522 1..522 2661 100 Plus
CG5001-PC 346 CG5001-PC 1..72 37..108 169 40.3 Plus
CG5001-PD 350 CG5001-PD 1..72 37..108 169 40.3 Plus
CG5001-PA 350 CG5001-PA 1..72 37..108 169 40.3 Plus