Clone Sequence Records
BS07030.3prime Sequence
964 bp (812 high quality bases) assembled on 2006-01-06
> BS07030.3prime
ATGGTCTAGAAAGCTTTCACATATCCTCCACGCTGTACTTGTAGGCCTCA
TCCTGCACGGCCCGCCGTTCGTTCTGTTTGTCGAACCAACGCTGCTCGTA
GCCGTTGGATCGATCGACGCCATCCCAGCGATATCCTGGTCGGATGCCAA
ATCGGTTCTCCGGAAAGCTGCCCTCGTACTTGGGCATCACCGGCTTGTTG
TCCTGCTGGTCGCGTTTCTTGCGCTTCTGGCGCATGTACTCCAGCATCGG
GTCGTCGGCGTGCTCCTGTTCGCGCAGATGCCTGTCCAGATCCTCGTCGT
TGGCATAGCGAGCCACCGGTTTGGAGGCCTCATGGACCATCTCCTCCAGG
CGGGACTTGTGATCTTCTATTTGCTTCAACCCCTTGCCCCAGCGATCGTA
CAGTTCCTTCTTCTTTTTCTCGTGCTCCTCTTTGCGGCCCTGCTCGGCGG
GATCCTCATTGGCGGCATCTCGTGCTCGGTGTCCCTTTCTGCGAGTACTG
CGCACCTGCACATCGCCATCACGACCGGAAATTTCGCTGGACATTTTCTC
GAATAGTTCATGTTCTTGTCGACGCCTTTCGTCGGTTTCCTTCTTCAGCG
ATTTCGCATCCTGCAGTCCAGCTTTCTTGCCATCTAGTGTCTTGGTGGAT
TTCGGCTTGTGTGTCGGAGGTGGAGATGCTGATTTGCTGGGCGATGCCTT
GGCCCAGCGACTTTTCCTTTCTTCCTTGAAGCGATTACGAGGCGGTGGAC
TGCGCTCTCGACTTCTGTGATTTCTGGCCGGGCTTTGGTCGGAGTCGTGA
CGTCTGCGTGGTGATTTGTCTCGTTTTCTGGTTGGACTTTGGTCGAAGTC
TCGTTTTCTTCGCGGTGGCGATTGATCTACATCCCTTGGGTCTTCTTGGG
CGGGCTTTGATCGGAGTTTCTTCTCCTCCTTGGCGGCGTTTGCTTGTCAT
CTCTGCGTCTTCGG
BS07030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13625-PA | 1944 | CG13625-RA | 1077..1944 | 884..17 | 4340 | 100 | Minus |
| CG13625-PA | 1944 | CG13625-RA | 999..1064 | 964..899 | 330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13625-RA | 2094 | CG13625-RA | 1079..2025 | 964..16 | 4695 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24583136..24584082 | 16..964 | 4645 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:03:49 has no hits.
BS07030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:42 Download gff for
BS07030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-PA | 999..1944 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:11 Download gff for
BS07030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-PA | 999..1944 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:02:09 Download gff for
BS07030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-RA | 1079..2034 | 6..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:07 Download gff for
BS07030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-RA | 1079..2034 | 6..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:07 Download gff for
BS07030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24583127..24584082 | 6..964 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:02:09 Download gff for
BS07030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20408849..20409804 | 6..964 | 99 | | Plus |
BS07030.5prime Sequence
916 bp (752 high quality bases) assembled on 2006-01-06
> BS07030.5prime
GAAGTTATCAGTCGACATGTCCATGCAAAAGGCCAAAGTCATCGACCAGA
AGGAGTACCTCAAGAAGTACCTATCCGGCGACAAGGAGAAGAAGAAGAAA
AAGAAGGAGAAGAAGCACAAAAAGAATTCGGCCAACACCAAAGTGAAAAT
CATCGATGACGACGCCTACGAAAATGATAATCTGGAAATGGACGAAGATC
TACTGCTGGGCGGCGAGGATGCGCCTCAAATTGTGGGCGAGTACATCGAA
GAGGATCCCAATGTGCGCAGCAAGTGGCGCAACATTGCCGTCAAGGATGA
AATCAAAGAAGAGCACGAGGAATCCTCGCCAGCAACTGGCATTCGCATCA
AACAGGAGCCCTTGGATGAGGAGCAGGAGATGTGGGGACGCAAGGCGACA
GTTGTTAAGGTTAAGGATGAATTCTCACCATCCAGACGAAGTTCACCCGT
CAGAATTAAGCAAGAAAAACGCAGCAGCTCTAGGGATTTAAGCCCAGCGA
GATCGAGTAAGCCAGCAAAGCGAGAAGAGAGTCCTCAAAGGGGGCGAAGA
AGGGCGGGAAGCTCAGATCAGAGTCCCACCAGACGAGGGCGAGATGGCGA
TCAGTCTCCGCCACGCCAAAAGCACAGGGATTCCGATCAGAGTCCACCCC
GAAAGGCCAGGAATGGCAATCAATCGCCAGTCAGAAAAAGGCGGGATTCC
GACCAAAGTCCGCCAAGAAAACGAACGGGAAAAGCATCACCCACTCGAAG
GAGAAGGGATTCCGATCAATCGCCACCCAGACGCCGCAGAAGTAACTCCG
ATCAGAGTCCGCCAAGGCGACGTAGAGACAAGGATTCAACTCCGCCCAGA
AGGAGGAAAGATTCCGATCAAGCCCACCTCGAAGGCGTAAAGCAGACGAT
CAATCTCCGGTGCGAA
BS07030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13625-PA | 1944 | CG13625-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
| CG13625-PA | 1944 | CG13625-RA | 855..901 | 870..916 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13625-RA | 2094 | CG13625-RA | 81..981 | 17..916 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24584180..24585080 | 916..17 | 4455 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:34:25 has no hits.
BS07030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:43 Download gff for
BS07030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-PA | 1..899 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:12 Download gff for
BS07030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-PA | 1..899 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:26:05 Download gff for
BS07030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-RA | 81..981 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:13 Download gff for
BS07030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-RA | 81..981 | 17..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:13 Download gff for
BS07030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24584180..24585080 | 17..916 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:26:05 Download gff for
BS07030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20409902..20410802 | 17..916 | 99 | | Minus |
BS07030.complete Sequence
1976 bp assembled on 2008-01-02
GenBank Submission: FJ635697
> BS07030.complete
GAAGTTATCAGTCGACATGTCCATGCAAAAGGCCAAAGTCATCGACCAGA
AGGAGTACCTCAAGAAGTACCTATCCGGCGACAAGGAGAAGAAGAAGAAA
AAGAAGGAGAAGAAGCACAAAAAGAATTCGGCCAACACCAAAGTGAAAAT
CATCGATGACGACGCCTACGAAAATGATAATCTGGAAATGGACGAAGATC
TACTGCTGGGCGGCGAGGATGCGCCTCAAATTGTGGGCGAGTACATCGAA
GAGGATCCCAATGTGCGCAGCAAGTGGCGCAACATTGCCGTCAAGGATGA
AATCAAAGAAGAGCACGAGGAATCCTCGCCAGCAACTGGCATTCGCATCA
AACAGGAGCCCTTGGATGAGGAGCAGGAGATGTGGGGACGCAAGGCGACA
GTTGTTAAGGTTAAGGATGAATTCTCACCATCCAGACGAAGTTCACCCGT
CAGAATTAAGCAAGAAAAACGCAGCAGCTCTAGGGATTTAAGCCCAGCGA
GATCGAGTAAGCCAGCAAAGCGAGAAGAGAGTCCTCAAAGGGGGCGAAGA
AGGGCGGGAAGCTCAGATCAGAGTCCCACCAGACGAGGGCGAGATGGCGA
TCAGTCTCCGCCACGCCAAAAGCACAGGGATTCCGATCAGAGTCCACCCC
GAAAGGCCAGGAATGGCAATCAATCGCCAGTCAGAAAAAGGCGGGATTCC
GACCAAAGTCCGCCAAGAAAACGAACGGGAAAAGCATCACCCACTCGAAG
GAGAAGGGATTCCGATCAATCGCCACCCAGACGCCGCAGAAGTAACTCCG
ATCAGAGTCCGCCAAGGCGACGTAGAGACAAGGATTCAACTCCGCCCAGA
AGGAGGAAAGATTCCGATCAAAGCCCACCTCGAAGGCGTAAAGCAGACGA
TCAATCTCCGGTGCGAAGGGAAAGGAAAGACTCCGACCAAAGTCCGCCTA
GGAAACGGAGAGACAATGACCAGTCTCCAGTGCGAAGGAGGCGGGATTCA
GATCAAAGCCCGCCCCGAAGACGCAGAGATGACAAGCAAACGCCGCCAAG
GAGGAGAAGAAACTCCGATCAAAGCCCGCCAAGAAGACCCAAGGATGTAG
ATCAATCGCCACCGCGAAGAAAACGAGACTTCGACCAAAGTCCAACCAGA
AAACGAGACAAATCACCACGCAGACGTCACGACTCCGACCAAAGCCCGGC
CAGAAATCACAGAAGTCGAGAGCGCAGTCCACCGCCTCGTAATCGCTTCA
AGGAAGAAAGGAAAAGTCGCTGGGCCAAGGCATCGCCCAGCAAATCAGCA
TCTCCACCTCCGACACACAAGCCGAAATCCACCAAGACACTAGATGGCAA
GAAAGCTGGACTGCAGGATGCGAAATCGCTGAAGAAGGAAACCGACGAAA
GGCGTCGACAAGAACATGAACTATTCGAGAAAATGTCCAGCGAAATTTCC
GGTCGTGATGGCGATGTGCAGGTGCGCAGTACTCGCAGAAAGGGACACCG
AGCACGAGATGCCGCCAATGAGGATCCCGCCGAGCAGGGCCGCAAAGAGG
AGCACGAGAAAAAGAAGAAGGAACTGTACGATCGCTGGGGCAAGGGGTTG
AAGCAAATAGAAGATCACAAGTCCCGCCTGGAGGAGATGGTCCATGAGGC
CTCCAAACCGGTGGCTCGCTATGCCAACGACGAGGATCTGGACAGGCATC
TGCGCGAACAGGAGCACGCCGACGACCCGATGCTGGAGTACATGCGCCAG
AAGCGCAAGAAACGCGACCAGCAGGACAACAAGCCGGTGATGCCCAAGTA
CGAGGGCAGCTTTCCGGAGAACCGATTTGGCATCCGACCAGGATATCGCT
GGGATGGCGTCGATCGATCCAACGGCTACGAGCAGCGTTGGTTCGACAAA
CAGAACGAACGGCGGGCCGTGCAGGATGAGGCCTACAAGTACAGCGTGGA
GGATATGTGAAAGCTTTCTAGACCAT
BS07030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13625-RA | 1944 | CG13625-PA | 1..1944 | 17..1960 | 9720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13625-RA | 2094 | CG13625-RA | 81..2025 | 17..1961 | 9725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24583136..24585080 | 1961..17 | 9725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:13:20 has no hits.
BS07030.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:49 Download gff for
BS07030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-RA | 54..1996 | 17..1959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:08:56 Download gff for
BS07030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-RA | 81..2023 | 17..1959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:34 Download gff for
BS07030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-RA | 54..2007 | 17..1971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:32 Download gff for
BS07030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13625-RA | 81..2023 | 17..1959 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:32 Download gff for
BS07030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24583138..24585080 | 17..1959 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:08:56 Download gff for
BS07030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20408860..20410802 | 17..1959 | 100 | | Minus |
BS07030.pep Sequence
Translation from 16 to 1959
> BS07030.pep
MSMQKAKVIDQKEYLKKYLSGDKEKKKKKKEKKHKKNSANTKVKIIDDDA
YENDNLEMDEDLLLGGEDAPQIVGEYIEEDPNVRSKWRNIAVKDEIKEEH
EESSPATGIRIKQEPLDEEQEMWGRKATVVKVKDEFSPSRRSSPVRIKQE
KRSSSRDLSPARSSKPAKREESPQRGRRRAGSSDQSPTRRGRDGDQSPPR
QKHRDSDQSPPRKARNGNQSPVRKRRDSDQSPPRKRTGKASPTRRRRDSD
QSPPRRRRSNSDQSPPRRRRDKDSTPPRRRKDSDQSPPRRRKADDQSPVR
RERKDSDQSPPRKRRDNDQSPVRRRRDSDQSPPRRRRDDKQTPPRRRRNS
DQSPPRRPKDVDQSPPRRKRDFDQSPTRKRDKSPRRRHDSDQSPARNHRS
RERSPPPRNRFKEERKSRWAKASPSKSASPPPTHKPKSTKTLDGKKAGLQ
DAKSLKKETDERRRQEHELFEKMSSEISGRDGDVQVRSTRRKGHRARDAA
NEDPAEQGRKEEHEKKKKELYDRWGKGLKQIEDHKSRLEEMVHEASKPVA
RYANDEDLDRHLREQEHADDPMLEYMRQKRKKRDQQDNKPVMPKYEGSFP
ENRFGIRPGYRWDGVDRSNGYEQRWFDKQNERRAVQDEAYKYSVEDM*
BS07030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13625-PA | 647 | CG13625-PA | 1..647 | 1..647 | 3419 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 272..735 | 117..589 | 290 | 18.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 266..748 | 26..574 | 287 | 21.5 | Plus |
| Moca-cyp-PC | 685 | CG1866-PC | 101..628 | 22..544 | 280 | 24.2 | Plus |
| Moca-cyp-PB | 685 | CG1866-PB | 101..628 | 22..544 | 280 | 24.2 | Plus |
| Moca-cyp-PA | 970 | CG1866-PA | 386..913 | 22..544 | 280 | 24.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 268..741 | 146..646 | 279 | 18.4 | Plus |
| CG2839-PA | 826 | CG2839-PA | 283..798 | 9..522 | 273 | 18.2 | Plus |
| Moca-cyp-PC | 685 | CG1866-PC | 239..681 | 12..480 | 242 | 24.6 | Plus |
| Moca-cyp-PB | 685 | CG1866-PB | 239..681 | 12..480 | 242 | 24.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 383..737 | 4..418 | 218 | 19.3 | Plus |
| Moca-cyp-PC | 685 | CG1866-PC | 3..477 | 161..589 | 165 | 20.6 | Plus |
| Moca-cyp-PB | 685 | CG1866-PB | 3..477 | 161..589 | 165 | 20.6 | Plus |
