Clone BS07031 Report

Search the DGRC for BS07031

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG1309-RA
Protein status:BS07031.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07031.3prime Sequence

844 bp (799 high quality bases) assembled on 2006-01-06

> BS07031.3prime
ATGGTCTAGAAAGCTTTTAGGTGAACACAAATCCCTGCTCAGTGGGTATG
TCCCACGGCATGGTAAAGAACTCCCCGGGCAGCTGGGTGCAGTGCGTCGA
GTTATAGTCACGTAAATGCTTGCGCAGCAAGAACACAGCCATCAGATTGC
GCACCTCCTCCGAGTAATCTGCTCCAATGTTCATGGGGAATGACTTGCCC
TCGTCAGAGGCGTAGGTGATCAGGCGCGACATGCACAGCTTCTCGTCGGC
GACGGGGATACTGTATGGTTCCAGGGGCTTAGACAGCAGCCCCTTGGCCT
TATTCAACTGGGAAGCCCCAAAAATGTTGGGATACCGGTGCTTGAGCACT
GACAAGACCAAGAAATTTCCGCGGTTTGTGTCAATGTGGTTGTCCTCTGC
AATGATCTCATCCTCAGTGCGGCGAATAAAGGATATGGGTCCATTGAACT
CGTTGGCCAGTTCGGCATTGTTCAAATTACAGTAGTTTCGAATGGCTACC
TTGACAATGCCCGCCAGTGCAGCTGGCATGCGAGGAACGGCCAAGTAGAG
CACATCGTCGAAGGTGGCGTCTAGTACCACTCCCTTGACATCCGGATACA
CAGAGGCAGCGTATAGTGTACTAAAGCCACCAATGCTCCAGCCATACAAA
ATTATATCCTCTACGGGGAACCTAAGATTGTTGATGGCAAACTGCACCAC
GGCATCGATGGCGTTCTTGTCCTGGTGGGGATGAGGAGTGCCTGTGCTGC
CGGCAAATCCGGGATGATTCCAGCCCAAAACGGAATACTTTAAGGCCACT
GGGGTGGCCATAATGCCCACTTCATAAAAACCGGCATTGCCCTC

BS07031.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-PA 1575 CG1309-RA 748..1575 844..17 4140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-RA 1859 CG1309-RA 861..1688 844..17 4140 100 Minus
CG11586-RA 1115 CG11586-RA 940..1051 17..128 560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4260523..4260972 844..395 2250 100 Minus
3L 28110227 3L 4261038..4261305 395..128 1340 100 Minus
3L 28110227 3L 4261361..4261472 128..17 560 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:16:38 has no hits.

BS07031.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:45 Download gff for BS07031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-PA 748..1575 17..844 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:14 Download gff for BS07031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-PA 748..1575 17..844 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:06 Download gff for BS07031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 861..1691 12..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:13 Download gff for BS07031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 861..1691 12..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:13 Download gff for BS07031.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4260523..4260971 396..844 100 -> Minus
3L 4261038..4261305 128..395 100 -> Minus
3L 4261362..4261475 12..127 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:06 Download gff for BS07031.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4260523..4260971 396..844 100 -> Minus
arm_3L 4261038..4261305 128..395 100 -> Minus
arm_3L 4261362..4261475 12..127 98   Minus

BS07031.5prime Sequence

906 bp (828 high quality bases) assembled on 2006-01-06

> BS07031.5prime
GAAGTTATCAGTCGACATGAGTTTCCTAAATTACGTGTTTGGCCCCAACC
TCTACATGGAATACCGCGGTGTGCCGGAGCCGCAGCGCAAGATGTACGAG
GCAGGTGCCGTGGAAAAGTTCGGGGAGCAGATTCTATCGACGCTATCGGT
TATGTGGTCCGTGGGCTATTATACTTCTCCGCTGCTCGTCACATTCCTAT
ACCGACGCGGCTACCTGGTGACCGATTCCATACCGACGCTGGCCAAGATC
ACCACCAGCGTGGGCCTCATCGTCATCCTATCGCTGGTGATGCGCGGCCT
GGGGCGCAAGCAATCGCGCTCCTACTCCAACATGATTAAGGCCCTCGTCC
GAGCAAAGTCCTCCAAGGCACCAGGAGATGCCAACAGCGAGCTGCGTCGC
TTCGACATCGAGTTCAACGCTTGGCCGGTGGACTTTGATGTGAAAGCTCT
AACCGGTGATACCAAAAAGCCGGTGGTTACGGCTAGAAGGCGGGAGCCCA
TCCAGCTGGCGACACTGCCCTGTGAGGCCATCGCCTACCTGGCCATAAAC
ACCTTTGGGCTCTCCATGATCTATCCGGGTTCGGTCAAACTACTCCAGAA
ACTTATGAGACCCATGCTGATCTCCGGACGCGCCAAGCTCATCGAGGATG
ACAACGGCATCCGCTACAAGGTTAAGACCATTGACTCGAACGAAATCGAT
ACGTTGTTCATTGACAATCGCCCAAACAACGTGGGAAATGGCAAGACTCT
AGTCATTTGCTCCGAGGGCAATGCCGGTTTTTATGAAGTGGGCATTATGG
CCACCCCAGTGGCCTTAAAGTATTCCGTTTTGGGCTGGAATCATCCCGGA
TTTGCCGGCAGCACAGGCACTCCTCATCCCCCCAGGACAAGAACGCCATC
GATGCC

BS07031.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-PA 1575 CG1309-RA 1..865 17..881 4325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-RA 1859 CG1309-RA 114..1004 17..906 4430 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4259743..4260057 142..456 1575 100 Plus
3L 28110227 3L 4260368..4260666 609..906 1445 99.7 Plus
3L 28110227 3L 4260108..4260261 456..609 770 100 Plus
3L 28110227 3L 4259543..4259668 17..142 630 100 Plus
Blast to na_te.dros performed on 2015-02-10 04:45:26 has no hits.

BS07031.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:46 Download gff for BS07031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-PA 1..891 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:15 Download gff for BS07031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-PA 1..891 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:38 Download gff for BS07031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 114..1004 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:32 Download gff for BS07031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 114..1004 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:32 Download gff for BS07031.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4259543..4259668 17..142 100 -> Plus
3L 4259744..4260057 143..456 100 -> Plus
3L 4260109..4260260 457..608 100 -> Plus
3L 4260368..4260666 609..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:38 Download gff for BS07031.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4259543..4259668 17..142 100 -> Plus
arm_3L 4259744..4260057 143..456 100 -> Plus
arm_3L 4260109..4260260 457..608 100 -> Plus
arm_3L 4260368..4260666 609..906 99   Plus

BS07031.complete Sequence

1607 bp (1607 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635698

> BS07031.complete
GAAGTTATCAGTCGACATGAGTTTCCTAAATTACGTGTTTGGCCCCAACC
TCTACATGGAATACCGCGGTGTGCCGGAGCCGCAGCGCAAGATGTACGAG
GCAGGTGCCGTGGAAAAGTTCGGGGAGCAGATTCTATCGACGCTATCGGT
TATGTGGTCCGTGGGCTATTATACTTCTCCGCTGCTCGTCACATTCCTAT
ACCGACGCGGCTACCTGGTGACCGATTCCATACCGACGCTGGCCAAGATC
ACCACCAGCGTGGGCCTCATCGTCATCCTATCGCTGGTGATGCGCGGCCT
GGGGCGCAAGCAATCGCGCTCCTACTCCAACATGATTAAGGCCCTCGTCC
GAGCAAAGTCCTCCAAGGCACCAGGAGATGCCAACAGCGAGCTGCGTCGC
TTCGACATCGAGTTCAACGCTTGGCCGGTGGACTTTGATGTGAAAGCTCT
AACCGGTGATACCAAAAAGCCGGTGGTTACGGCTAGAAGGCGGGAGCCCA
TCCAGCTGGCGACACTGCCCTGTGAGGCCATCGCCTACCTGGCCATAAAC
ACCTTTGGGCTCTCCATGATCTATCCGGGTTCGGTCAAACTACTCCAGAA
ACTTATGAGACCCATGCTGATCTCCGGACGCGCCAAGCTCATCGAGGATG
ACAACGGCATCCGCTACAAGGTTAAGACCATTGACTCGAACGAAATCGAT
ACGTTGTTCATTGACAATCGCCCAAACAACGTGGGAAATGGCAAGACTCT
AGTCATTTGCTCCGAGGGCAATGCCGGTTTTTATGAAGTGGGCATTATGG
CCACCCCAGTGGCCTTAAAGTATTCCGTTTTGGGCTGGAATCATCCCGGA
TTTGCCGGCAGCACAGGCACTCCTCATCCCCACCAGGACAAGAACGCCAT
CGATGCCGTGGTGCAGTTTGCCATCAACAATCTTAGGTTCCCCGTAGAGG
ATATAATTTTGTATGGCTGGAGCATTGGTGGCTTTAGTACACTATACGCT
GCCTCTGTGTATCCGGATGTCAAGGGAGTGGTACTAGACGCCACCTTCGA
CGATGTGCTCTACTTGGCCGTTCCTCGCATGCCAGCTGCACTGGCGGGCA
TTGTCAAGGTAGCCATTCGAAACTACTGTAATTTGAACAATGCCGAACTG
GCCAACGAGTTCAATGGACCCATATCCTTTATTCGCCGCACTGAGGATGA
GATCATTGCAGAGGACAACCACATTGACACAAACCGCGGAAATTTCTTGG
TCTTGTCAGTGCTCAAGCACCGGTATCCCAACATTTTTGGGGCTTCCCAG
TTGAATAAGGCCAAGGGGCTGCTGTCTAAGCCCCTGGAACCATACAGTAT
CCCCGTCGCCGACGAGAAGCTGTGCATGTCGCGCCTGATCACCTACGCCT
CTGACGAGGGCAAGTCATTCCCCATGAACATTGGAGCAGATTACTCGGAG
GAGGTGCGCAATCTGATGGCTGTGTTCTTGCTGCGCAAGCATTTACGTGA
CTATAACTCGACGCACTGCACCCAGCTGCCCGGGGAGTTCTTTACCATGC
CGTGGGACATACCCACTGAGCAGGGATTTGTGTTCACCTAAAAGCTTTCT
AGACCAT

BS07031.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-RA 1575 CG1309-PA 1..1575 17..1591 7875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-RA 1859 CG1309-RA 114..1688 17..1591 7875 100 Plus
CG11586-RA 1115 CG11586-RA 940..1051 1591..1480 560 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4260368..4260972 609..1213 3025 100 Plus
3L 28110227 3L 4259743..4260057 142..456 1575 100 Plus
3L 28110227 3L 4261038..4261305 1213..1480 1340 100 Plus
3L 28110227 3L 4260108..4260261 456..609 770 100 Plus
3L 28110227 3L 4259543..4259668 17..142 630 100 Plus
3L 28110227 3L 4261361..4261472 1480..1591 560 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:55:04 has no hits.

BS07031.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:15 Download gff for BS07031.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 1..1575 17..1591 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:31 Download gff for BS07031.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 125..1702 17..1596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:59 Download gff for BS07031.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 114..1686 17..1589 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:15 Download gff for BS07031.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 125..1702 17..1596 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:18 Download gff for BS07031.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 114..1686 17..1589 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:18 Download gff for BS07031.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4259543..4259668 17..142 100 -> Plus
3L 4259744..4260057 143..456 100 -> Plus
3L 4260109..4260260 457..608 100 -> Plus
3L 4260368..4260971 609..1212 100 -> Plus
3L 4261038..4261305 1213..1480 100 -> Plus
3L 4261362..4261470 1481..1589 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:59 Download gff for BS07031.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4259543..4259668 17..142 100 -> Plus
arm_3L 4259744..4260057 143..456 100 -> Plus
arm_3L 4260109..4260260 457..608 100 -> Plus
arm_3L 4260368..4260971 609..1212 100 -> Plus
arm_3L 4261038..4261305 1213..1480 100 -> Plus
arm_3L 4261362..4261470 1481..1589 100   Plus

BS07031.pep Sequence

Translation from 16 to 1590

> BS07031.pep
MSFLNYVFGPNLYMEYRGVPEPQRKMYEAGAVEKFGEQILSTLSVMWSVG
YYTSPLLVTFLYRRGYLVTDSIPTLAKITTSVGLIVILSLVMRGLGRKQS
RSYSNMIKALVRAKSSKAPGDANSELRRFDIEFNAWPVDFDVKALTGDTK
KPVVTARRREPIQLATLPCEAIAYLAINTFGLSMIYPGSVKLLQKLMRPM
LISGRAKLIEDDNGIRYKVKTIDSNEIDTLFIDNRPNNVGNGKTLVICSE
GNAGFYEVGIMATPVALKYSVLGWNHPGFAGSTGTPHPHQDKNAIDAVVQ
FAINNLRFPVEDIILYGWSIGGFSTLYAASVYPDVKGVVLDATFDDVLYL
AVPRMPAALAGIVKVAIRNYCNLNNAELANEFNGPISFIRRTEDEIIAED
NHIDTNRGNFLVLSVLKHRYPNIFGASQLNKAKGLLSKPLEPYSIPVADE
KLCMSRLITYASDEGKSFPMNIGADYSEEVRNLMAVFLLRKHLRDYNSTH
CTQLPGEFFTMPWDIPTEQGFVFT*

BS07031.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-PA 524 CG1309-PA 1..524 1..524 2718 100 Plus