Clone Sequence Records
BS07031.3prime Sequence
844 bp (799 high quality bases) assembled on 2006-01-06
> BS07031.3prime
ATGGTCTAGAAAGCTTTTAGGTGAACACAAATCCCTGCTCAGTGGGTATG
TCCCACGGCATGGTAAAGAACTCCCCGGGCAGCTGGGTGCAGTGCGTCGA
GTTATAGTCACGTAAATGCTTGCGCAGCAAGAACACAGCCATCAGATTGC
GCACCTCCTCCGAGTAATCTGCTCCAATGTTCATGGGGAATGACTTGCCC
TCGTCAGAGGCGTAGGTGATCAGGCGCGACATGCACAGCTTCTCGTCGGC
GACGGGGATACTGTATGGTTCCAGGGGCTTAGACAGCAGCCCCTTGGCCT
TATTCAACTGGGAAGCCCCAAAAATGTTGGGATACCGGTGCTTGAGCACT
GACAAGACCAAGAAATTTCCGCGGTTTGTGTCAATGTGGTTGTCCTCTGC
AATGATCTCATCCTCAGTGCGGCGAATAAAGGATATGGGTCCATTGAACT
CGTTGGCCAGTTCGGCATTGTTCAAATTACAGTAGTTTCGAATGGCTACC
TTGACAATGCCCGCCAGTGCAGCTGGCATGCGAGGAACGGCCAAGTAGAG
CACATCGTCGAAGGTGGCGTCTAGTACCACTCCCTTGACATCCGGATACA
CAGAGGCAGCGTATAGTGTACTAAAGCCACCAATGCTCCAGCCATACAAA
ATTATATCCTCTACGGGGAACCTAAGATTGTTGATGGCAAACTGCACCAC
GGCATCGATGGCGTTCTTGTCCTGGTGGGGATGAGGAGTGCCTGTGCTGC
CGGCAAATCCGGGATGATTCCAGCCCAAAACGGAATACTTTAAGGCCACT
GGGGTGGCCATAATGCCCACTTCATAAAAACCGGCATTGCCCTC
BS07031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-PA | 1575 | CG1309-RA | 748..1575 | 844..17 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-RA | 1859 | CG1309-RA | 861..1688 | 844..17 | 4140 | 100 | Minus |
CG11586-RA | 1115 | CG11586-RA | 940..1051 | 17..128 | 560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4260523..4260972 | 844..395 | 2250 | 100 | Minus |
3L | 28110227 | 3L | 4261038..4261305 | 395..128 | 1340 | 100 | Minus |
3L | 28110227 | 3L | 4261361..4261472 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:16:38 has no hits.
BS07031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:45 Download gff for
BS07031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-PA | 748..1575 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:14 Download gff for
BS07031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-PA | 748..1575 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:06 Download gff for
BS07031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 861..1691 | 12..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:13 Download gff for
BS07031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 861..1691 | 12..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:13 Download gff for
BS07031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4260523..4260971 | 396..844 | 100 | -> | Minus |
3L | 4261038..4261305 | 128..395 | 100 | -> | Minus |
3L | 4261362..4261475 | 12..127 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:06 Download gff for
BS07031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4260523..4260971 | 396..844 | 100 | -> | Minus |
arm_3L | 4261038..4261305 | 128..395 | 100 | -> | Minus |
arm_3L | 4261362..4261475 | 12..127 | 98 | | Minus |
BS07031.5prime Sequence
906 bp (828 high quality bases) assembled on 2006-01-06
> BS07031.5prime
GAAGTTATCAGTCGACATGAGTTTCCTAAATTACGTGTTTGGCCCCAACC
TCTACATGGAATACCGCGGTGTGCCGGAGCCGCAGCGCAAGATGTACGAG
GCAGGTGCCGTGGAAAAGTTCGGGGAGCAGATTCTATCGACGCTATCGGT
TATGTGGTCCGTGGGCTATTATACTTCTCCGCTGCTCGTCACATTCCTAT
ACCGACGCGGCTACCTGGTGACCGATTCCATACCGACGCTGGCCAAGATC
ACCACCAGCGTGGGCCTCATCGTCATCCTATCGCTGGTGATGCGCGGCCT
GGGGCGCAAGCAATCGCGCTCCTACTCCAACATGATTAAGGCCCTCGTCC
GAGCAAAGTCCTCCAAGGCACCAGGAGATGCCAACAGCGAGCTGCGTCGC
TTCGACATCGAGTTCAACGCTTGGCCGGTGGACTTTGATGTGAAAGCTCT
AACCGGTGATACCAAAAAGCCGGTGGTTACGGCTAGAAGGCGGGAGCCCA
TCCAGCTGGCGACACTGCCCTGTGAGGCCATCGCCTACCTGGCCATAAAC
ACCTTTGGGCTCTCCATGATCTATCCGGGTTCGGTCAAACTACTCCAGAA
ACTTATGAGACCCATGCTGATCTCCGGACGCGCCAAGCTCATCGAGGATG
ACAACGGCATCCGCTACAAGGTTAAGACCATTGACTCGAACGAAATCGAT
ACGTTGTTCATTGACAATCGCCCAAACAACGTGGGAAATGGCAAGACTCT
AGTCATTTGCTCCGAGGGCAATGCCGGTTTTTATGAAGTGGGCATTATGG
CCACCCCAGTGGCCTTAAAGTATTCCGTTTTGGGCTGGAATCATCCCGGA
TTTGCCGGCAGCACAGGCACTCCTCATCCCCCCAGGACAAGAACGCCATC
GATGCC
BS07031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-PA | 1575 | CG1309-RA | 1..865 | 17..881 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-RA | 1859 | CG1309-RA | 114..1004 | 17..906 | 4430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4259743..4260057 | 142..456 | 1575 | 100 | Plus |
3L | 28110227 | 3L | 4260368..4260666 | 609..906 | 1445 | 99.7 | Plus |
3L | 28110227 | 3L | 4260108..4260261 | 456..609 | 770 | 100 | Plus |
3L | 28110227 | 3L | 4259543..4259668 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:45:26 has no hits.
BS07031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:59:46 Download gff for
BS07031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:15 Download gff for
BS07031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:38 Download gff for
BS07031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 114..1004 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:32 Download gff for
BS07031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 114..1004 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:32 Download gff for
BS07031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4259543..4259668 | 17..142 | 100 | -> | Plus |
3L | 4259744..4260057 | 143..456 | 100 | -> | Plus |
3L | 4260109..4260260 | 457..608 | 100 | -> | Plus |
3L | 4260368..4260666 | 609..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:38 Download gff for
BS07031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4259543..4259668 | 17..142 | 100 | -> | Plus |
arm_3L | 4259744..4260057 | 143..456 | 100 | -> | Plus |
arm_3L | 4260109..4260260 | 457..608 | 100 | -> | Plus |
arm_3L | 4260368..4260666 | 609..906 | 99 | | Plus |
BS07031.complete Sequence
1607 bp (1607 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635698
> BS07031.complete
GAAGTTATCAGTCGACATGAGTTTCCTAAATTACGTGTTTGGCCCCAACC
TCTACATGGAATACCGCGGTGTGCCGGAGCCGCAGCGCAAGATGTACGAG
GCAGGTGCCGTGGAAAAGTTCGGGGAGCAGATTCTATCGACGCTATCGGT
TATGTGGTCCGTGGGCTATTATACTTCTCCGCTGCTCGTCACATTCCTAT
ACCGACGCGGCTACCTGGTGACCGATTCCATACCGACGCTGGCCAAGATC
ACCACCAGCGTGGGCCTCATCGTCATCCTATCGCTGGTGATGCGCGGCCT
GGGGCGCAAGCAATCGCGCTCCTACTCCAACATGATTAAGGCCCTCGTCC
GAGCAAAGTCCTCCAAGGCACCAGGAGATGCCAACAGCGAGCTGCGTCGC
TTCGACATCGAGTTCAACGCTTGGCCGGTGGACTTTGATGTGAAAGCTCT
AACCGGTGATACCAAAAAGCCGGTGGTTACGGCTAGAAGGCGGGAGCCCA
TCCAGCTGGCGACACTGCCCTGTGAGGCCATCGCCTACCTGGCCATAAAC
ACCTTTGGGCTCTCCATGATCTATCCGGGTTCGGTCAAACTACTCCAGAA
ACTTATGAGACCCATGCTGATCTCCGGACGCGCCAAGCTCATCGAGGATG
ACAACGGCATCCGCTACAAGGTTAAGACCATTGACTCGAACGAAATCGAT
ACGTTGTTCATTGACAATCGCCCAAACAACGTGGGAAATGGCAAGACTCT
AGTCATTTGCTCCGAGGGCAATGCCGGTTTTTATGAAGTGGGCATTATGG
CCACCCCAGTGGCCTTAAAGTATTCCGTTTTGGGCTGGAATCATCCCGGA
TTTGCCGGCAGCACAGGCACTCCTCATCCCCACCAGGACAAGAACGCCAT
CGATGCCGTGGTGCAGTTTGCCATCAACAATCTTAGGTTCCCCGTAGAGG
ATATAATTTTGTATGGCTGGAGCATTGGTGGCTTTAGTACACTATACGCT
GCCTCTGTGTATCCGGATGTCAAGGGAGTGGTACTAGACGCCACCTTCGA
CGATGTGCTCTACTTGGCCGTTCCTCGCATGCCAGCTGCACTGGCGGGCA
TTGTCAAGGTAGCCATTCGAAACTACTGTAATTTGAACAATGCCGAACTG
GCCAACGAGTTCAATGGACCCATATCCTTTATTCGCCGCACTGAGGATGA
GATCATTGCAGAGGACAACCACATTGACACAAACCGCGGAAATTTCTTGG
TCTTGTCAGTGCTCAAGCACCGGTATCCCAACATTTTTGGGGCTTCCCAG
TTGAATAAGGCCAAGGGGCTGCTGTCTAAGCCCCTGGAACCATACAGTAT
CCCCGTCGCCGACGAGAAGCTGTGCATGTCGCGCCTGATCACCTACGCCT
CTGACGAGGGCAAGTCATTCCCCATGAACATTGGAGCAGATTACTCGGAG
GAGGTGCGCAATCTGATGGCTGTGTTCTTGCTGCGCAAGCATTTACGTGA
CTATAACTCGACGCACTGCACCCAGCTGCCCGGGGAGTTCTTTACCATGC
CGTGGGACATACCCACTGAGCAGGGATTTGTGTTCACCTAAAAGCTTTCT
AGACCAT
BS07031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-RA | 1575 | CG1309-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-RA | 1859 | CG1309-RA | 114..1688 | 17..1591 | 7875 | 100 | Plus |
CG11586-RA | 1115 | CG11586-RA | 940..1051 | 1591..1480 | 560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4260368..4260972 | 609..1213 | 3025 | 100 | Plus |
3L | 28110227 | 3L | 4259743..4260057 | 142..456 | 1575 | 100 | Plus |
3L | 28110227 | 3L | 4261038..4261305 | 1213..1480 | 1340 | 100 | Plus |
3L | 28110227 | 3L | 4260108..4260261 | 456..609 | 770 | 100 | Plus |
3L | 28110227 | 3L | 4259543..4259668 | 17..142 | 630 | 100 | Plus |
3L | 28110227 | 3L | 4261361..4261472 | 1480..1591 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:55:04 has no hits.
BS07031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:15 Download gff for
BS07031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 1..1575 | 17..1591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:31 Download gff for
BS07031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 125..1702 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:59 Download gff for
BS07031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 114..1686 | 17..1589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:15 Download gff for
BS07031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 125..1702 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:18 Download gff for
BS07031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 114..1686 | 17..1589 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:18 Download gff for
BS07031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4259543..4259668 | 17..142 | 100 | -> | Plus |
3L | 4259744..4260057 | 143..456 | 100 | -> | Plus |
3L | 4260109..4260260 | 457..608 | 100 | -> | Plus |
3L | 4260368..4260971 | 609..1212 | 100 | -> | Plus |
3L | 4261038..4261305 | 1213..1480 | 100 | -> | Plus |
3L | 4261362..4261470 | 1481..1589 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:59 Download gff for
BS07031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4259543..4259668 | 17..142 | 100 | -> | Plus |
arm_3L | 4259744..4260057 | 143..456 | 100 | -> | Plus |
arm_3L | 4260109..4260260 | 457..608 | 100 | -> | Plus |
arm_3L | 4260368..4260971 | 609..1212 | 100 | -> | Plus |
arm_3L | 4261038..4261305 | 1213..1480 | 100 | -> | Plus |
arm_3L | 4261362..4261470 | 1481..1589 | 100 | | Plus |
BS07031.pep Sequence
Translation from 16 to 1590
> BS07031.pep
MSFLNYVFGPNLYMEYRGVPEPQRKMYEAGAVEKFGEQILSTLSVMWSVG
YYTSPLLVTFLYRRGYLVTDSIPTLAKITTSVGLIVILSLVMRGLGRKQS
RSYSNMIKALVRAKSSKAPGDANSELRRFDIEFNAWPVDFDVKALTGDTK
KPVVTARRREPIQLATLPCEAIAYLAINTFGLSMIYPGSVKLLQKLMRPM
LISGRAKLIEDDNGIRYKVKTIDSNEIDTLFIDNRPNNVGNGKTLVICSE
GNAGFYEVGIMATPVALKYSVLGWNHPGFAGSTGTPHPHQDKNAIDAVVQ
FAINNLRFPVEDIILYGWSIGGFSTLYAASVYPDVKGVVLDATFDDVLYL
AVPRMPAALAGIVKVAIRNYCNLNNAELANEFNGPISFIRRTEDEIIAED
NHIDTNRGNFLVLSVLKHRYPNIFGASQLNKAKGLLSKPLEPYSIPVADE
KLCMSRLITYASDEGKSFPMNIGADYSEEVRNLMAVFLLRKHLRDYNSTH
CTQLPGEFFTMPWDIPTEQGFVFT*
BS07031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-PA | 524 | CG1309-PA | 1..524 | 1..524 | 2718 | 100 | Plus |