Clone BS07038 Report

Search the DGRC for BS07038

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCyp9b2-RA
Protein status:BS07038.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07038.3prime Sequence

903 bp (812 high quality bases) assembled on 2006-01-06

> BS07038.3prime
ATGGTCTAGAAAGCTTTTATTTTCGCGGCACCAAGTGCATCCAGAATCCG
GACCTAGGCGTAAAATTGAATCCACTCGCTGATCCCCACAGATCCTTGAT
GGTCCTTGGGGAGGCCTCGATTTTGTAATGCAGCAGTAGGTTGAAGAGCA
TACCCTTGACCTGCATCAAGGCATATCGATTTCCTATGCAATTCCTAGGT
CCCACGCCGAATGGCAAGTAGGTGTAGGGCACCATGTCACCCTTTCGCTC
TTCGCTAAATCGATCCGGGTCAAACTTTCTGGGTTCCGGGAAGTAGCGGT
CATCCAAGTGCAACCCGGAAATGGGAATGTTGATTCGGTCGCCTACCTTG
AAGTCGAACAGCTTGGTGCCATCATCATCCGTGAGCGTGTAGTCCTTGGA
GCACAGGCGATCGGTGGCGGCGGCTAGAGTCCACTTTCGAAGGGACTCGG
AGATGACCATGTCCATGTAGGTCATCTTCTGCACGGCGTCGTAAGTGAGT
GGTGCACCGTTCAGAGCTTTCTTGGTCTCGACTATCTCCTCGTATAAACG
CTCCTGGACGTCGGGATTGTAAAGCAGTTCGTAGGTTGTGGTGCAGATCA
GATTGGAGTTGTTTTCGAAGGCGGCGAAGAAGAAAATGAAGCACTGGGCC
ACGATCTCATCGTCCGTCCATTTATCCTCCGACTCATTCTTGGCCTCCAT
CAGGAGCTGGATCATGTCGGGCCTGGTGATATTGTGCTTCTCGCGGTACT
GCATGGCTTCCACCACCAAGCGAGCAAAGTAATCAACCTTGGCGGAGTCG
AAAATAGTAAGCTTCAAAAGACTGAAAAGCTTTGGCCACAAGGTGGACAG
CATGAACTTGAAGAACTGAAGTCCTCGGGAGAAACCAGCGACTGCCCGAT
CTC

BS07038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4486-PA 1518 Cyp9b2-RA 651..1518 884..17 4290 99.7 Minus
CG4485-PA 1518 Cyp9b1-RA 736..992 799..543 685 90.6 Minus
CG4485-PA 1518 Cyp9b1-RA 1027..1106 508..429 325 96.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9b2-RA 1667 CG4486-RA 681..1568 903..17 4385 99.7 Minus
Cyp9b1-RA 1752 CG4485-RA 682..1548 884..18 1950 82.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7130602..7131239 183..820 3190 100 Plus
2R 25286936 2R 7128318..7128939 198..819 1595 83.8 Plus
2R 25286936 2R 7130376..7130545 17..186 850 100 Plus
2R 25286936 2R 7128042..7128209 18..185 360 81 Plus
2R 25286936 2R 7131312..7131395 821..903 340 96.4 Plus
Blast to na_te.dros performed on 2015-02-11 10:05:38 has no hits.

BS07038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:00 Download gff for BS07038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4486-PA 631..1518 17..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:34 Download gff for BS07038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4486-PA 631..1518 17..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:02:48 Download gff for BS07038.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 681..1571 12..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:23 Download gff for BS07038.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 681..1571 12..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:23 Download gff for BS07038.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7130373..7130542 12..183 98 <- Plus
2R 7130603..7131239 184..820 100 <- Plus
2R 7131312..7131395 821..903 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:02:48 Download gff for BS07038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3018817..3018900 821..903 96   Plus
arm_2R 3017878..3018047 12..183 98 <- Plus
arm_2R 3018108..3018744 184..820 100 <- Plus

BS07038.5prime Sequence

899 bp (757 high quality bases) assembled on 2006-01-06

> BS07038.5prime
GAAGTTATCAGTCGACATGGCACTCATCGAAATTTGTCTGGCCCTTGTGG
TCATCGGTTATCTCATCTACAAATGGAGCACGGCCACCTTCAAAACCTTT
GAGGAAAGGAAGCTCTACTTCGAAAAGCCATATCCCTTTGTGGGTAATAT
GGCTGCAGCGGCCTTGCAGAAGTCGTCCTTCCAGAGACAACTCACCGAGT
TCTACGAACGCACTCGTCAACACAAACTGGTGGGCTTCTTCAATATGCGC
ACACCTATGATCACGCTAAACGACCCGGAGCTGATCAAAAAGGTCTGCGT
AAAGGACTTTGACCACTTCCCCAACCACCAGCCCTTCATCACCTCCAACG
ATCGCCTGTTCAACGACATGCTCAGCGTGATGAGGGACCAGCGGTGGAAG
CACATGAGAAACACCCTCACTCCGGTCTTCACGGCGGCCAAAATGCGCAA
CATGTTCACCCTGATGAACGAGAGCTTCGCGGAGTGCCTGCAGCACCTGG
ACAGCTCTTCGAAAACGCTTCCCGGCAGAAAGGGCTTTGAGGTGGACATG
AAGGTGATGTGCAACAAGCTCTCCAACGACATCATCGCCACTACCGCATT
CGGGCTAAAGGTTAACTCGTACGACAACCCGAAAAATGAGTTCTACGAGA
TCGGGCAGTCGCTGGTTTTCTCCCGAGGACTTCAGTTCTTCAAGTTCATG
CTGTCCACCTTGGTGCCAAAGCTTTTCAGTCTTTTGAAGCTTACTATTTT
CGACTCCGCCAAGGTTGATTACTTTGCTCGCTTGGTGGTGGAAGCCATGC
AGTACCGCGAGAAGCACAATATCACCAGGCCCGACATGATCCAGCTCCTG
ATGGAGGCCAAGAATGAGTCCGAGGATAAATGGACGGACGATGAGATCG

BS07038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4486-PA 1518 Cyp9b2-RA 1..883 17..899 4390 99.8 Plus
CG4485-PA 1518 Cyp9b1-RA 736..883 752..899 340 89.1 Plus
CG4485-PA 1518 Cyp9b1-RA 406..464 422..480 220 94.9 Plus
CG4485-PA 1518 Cyp9b1-RA 251..315 267..331 150 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9b2-RA 1667 CG4486-RA 51..933 17..899 4400 99.9 Plus
Cyp9b1-RA 1752 CG4485-RA 131..914 116..899 1430 79.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7131312..7131819 730..223 2540 100 Minus
2R 25286936 2R 7131884..7132089 222..17 1030 100 Minus
2R 25286936 2R 7131071..7131239 899..731 830 99.4 Minus
2R 25286936 2R 7129029..7129510 704..223 745 77 Minus
2R 25286936 2R 7128772..7128939 899..732 540 88.1 Minus
Blast to na_te.dros performed 2015-02-04 02:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 663..775 170..291 112 59 Plus

BS07038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:02 Download gff for BS07038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4486-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:36 Download gff for BS07038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4486-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:46:37 Download gff for BS07038.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 46..933 9..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:35 Download gff for BS07038.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 46..933 9..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:35 Download gff for BS07038.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7131071..7131239 731..899 99 <- Minus
2R 7131312..7131819 223..730 100 <- Minus
2R 7131884..7132094 9..222 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:46:37 Download gff for BS07038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3018576..3018744 731..899 99 <- Minus
arm_2R 3018817..3019324 223..730 100 <- Minus
arm_2R 3019389..3019599 9..222 98   Minus

BS07038.complete Sequence

1550 bp (1550 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635700

> BS07038.complete
GAAGTTATCAGTCGACATGGCACTCATCGAAATTTGTCTGGCCCTTGTGG
TCATCGGTTATCTCATCTACAAATGGAGCACGGCCACCTTCAAAACCTTT
GAGGAAAGGAAGCTCTACTTCGAAAAGCCATATCCCTTTGTGGGTAATAT
GGCTGCAGCGGCCTTGCAGAAGTCGTCCTTCCAGAGACAACTCACCGAGT
TCTACGAACGCACTCGTCAACACAAACTGGTGGGCTTCTTCAATATGCGC
ACACCTATGATCACGCTAAACGACCCGGAGCTGATCAAAAAGGTCTGCGT
AAAGGACTTTGACCACTTCCCCAACCACCAGCCCTTCATCACCTCCAACG
ATCGCCTGTTCAACGACATGCTCAGCGTGATGAGGGACCAGCGGTGGAAG
CACATGAGAAACACCCTCACTCCGGTCTTCACGGCGGCCAAAATGCGCAA
CATGTTCACCCTGATGAACGAGAGCTTCGCGGAGTGCCTGCAGCACCTGG
ACAGCTCTTCGAAAACGCTTCCCGGCAGAAAGGGCTTTGAGGTGGACATG
AAGGTGATGTGCAACAAGCTCTCCAACGACATCATCGCCACTACCGCATT
CGGGCTAAAGGTTAACTCGTACGACAACCCGAAAAATGAGTTCTACGAGA
TCGGGCAGTCGCTGGTTTTCTCCCGAGGACTTCAGTTCTTCAAGTTCATG
CTGTCCACCTTGGTGCCAAAGCTTTTCAGTCTTTTGAAGCTTACTATTTT
CGACTCCGCCAAGGTTGATTACTTTGCTCGCTTGGTGGTGGAAGCCATGC
AGTACCGCGAGAAGCACAATATCACCAGGCCCGACATGATCCAGCTCCTG
ATGGAGGCCAAGAATGAGTCGGAGGATAAATGGACGGACGATGAGATCGT
GGCCCAGTGCTTCATTTTCTTCTTCGCCGCCTTCGAAAACAACTCCAATC
TGATCTGCACCACAACCTACGAACTGCTTTACAATCCCGACGTCCAGGAG
CGTTTATACGAGGAGATAGTCGAGACCAAGAAAGCTCTGAACGGTGCACC
ACTCACTTACGACGCCGTGCAGAAGATGACCTACATGGACATGGTCATCT
CCGAGTCCCTTCGAAAGTGGACTCTAGCCGCCGCCACCGATCGCCTGTGC
TCCAAGGACTACACGCTCACGGATGATGATGGCACCAAGCTGTTCGACTT
CAAGGTAGGCGACCGAATCAACATTCCCATTTCCGGGTTGCACTTGGATG
ACCGCTACTTCCCGGAACCCAGAAAGTTTGACCCGGATCGATTTAGCGAA
GAGCGAAAGGGTGACATGGTGCCCTACACCTACTTGCCATTCGGCGTGGG
ACCTAGGAATTGCATAGGAAATCGATATGCCTTGATGCAGGTCAAGGGTA
TGCTCTTCAACCTACTGCTGCATTACAAAATCGAGGCCTCCCCAAGGACC
ATCAAGGATCTGTGGGGATCAGCGAGTGGATTCAATTTTACGCCTAGGTC
CGGATTCTGGATGCACTTGGTGCCGCGAAAATAAAAGCTTTCTAGACCAT

BS07038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9b2-RA 1518 CG4486-PA 1..1518 17..1534 7590 100 Plus
Cyp9b1-RA 1518 CG4485-PA 100..1517 116..1533 2785 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9b2-RA 1667 CG4486-RA 51..1568 17..1534 7590 100 Plus
Cyp9b1-RA 1752 CG4485-RA 131..1548 116..1533 2785 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7130602..7131239 1368..731 3190 100 Minus
2R 25286936 2R 7131312..7131819 730..223 2540 100 Minus
2R 25286936 2R 7128318..7128939 1353..732 1595 83.8 Minus
2R 25286936 2R 7131884..7132089 222..17 1030 100 Minus
2R 25286936 2R 7130376..7130545 1534..1365 850 100 Minus
2R 25286936 2R 7129029..7129510 704..223 745 77 Minus
2R 25286936 2R 7128042..7128209 1533..1366 360 81 Minus
Blast to na_te.dros performed on 2014-11-27 13:27:10 has no hits.

BS07038.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:17 Download gff for BS07038.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 1..1518 17..1534 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:32 Download gff for BS07038.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 42..1567 9..1539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:43:59 Download gff for BS07038.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 51..1566 17..1532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:17 Download gff for BS07038.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 42..1567 9..1539 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:40 Download gff for BS07038.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 51..1566 17..1532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:40 Download gff for BS07038.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7130378..7130542 1368..1532 100 <- Minus
2R 7130603..7131239 731..1367 100 <- Minus
2R 7131312..7131819 223..730 100 <- Minus
2R 7131884..7132089 17..222 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:43:59 Download gff for BS07038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3017883..3018047 1368..1532 100 <- Minus
arm_2R 3018108..3018744 731..1367 100 <- Minus
arm_2R 3018817..3019324 223..730 100 <- Minus
arm_2R 3019389..3019594 17..222 100   Minus

BS07038.pep Sequence

Translation from 16 to 1533

> BS07038.pep
MALIEICLALVVIGYLIYKWSTATFKTFEERKLYFEKPYPFVGNMAAAAL
QKSSFQRQLTEFYERTRQHKLVGFFNMRTPMITLNDPELIKKVCVKDFDH
FPNHQPFITSNDRLFNDMLSVMRDQRWKHMRNTLTPVFTAAKMRNMFTLM
NESFAECLQHLDSSSKTLPGRKGFEVDMKVMCNKLSNDIIATTAFGLKVN
SYDNPKNEFYEIGQSLVFSRGLQFFKFMLSTLVPKLFSLLKLTIFDSAKV
DYFARLVVEAMQYREKHNITRPDMIQLLMEAKNESEDKWTDDEIVAQCFI
FFFAAFENNSNLICTTTYELLYNPDVQERLYEEIVETKKALNGAPLTYDA
VQKMTYMDMVISESLRKWTLAAATDRLCSKDYTLTDDDGTKLFDFKVGDR
INIPISGLHLDDRYFPEPRKFDPDRFSEERKGDMVPYTYLPFGVGPRNCI
GNRYALMQVKGMLFNLLLHYKIEASPRTIKDLWGSASGFNFTPRSGFWMH
LVPRK*

BS07038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9b2-PA 505 CG4486-PA 1..505 1..505 2668 100 Plus
Cyp9b1-PA 505 CG4485-PA 1..505 1..505 2096 74.7 Plus
Cyp9f2-PA 516 CG11466-PA 2..515 3..504 1120 43.5 Plus
Cyp9c1-PA 522 CG3616-PA 1..519 1..504 1066 42 Plus
Cyp9h1-PA 518 CG17577-PA 6..518 6..505 1033 40.5 Plus