Clone Sequence Records
BS07038.3prime Sequence
903 bp (812 high quality bases) assembled on 2006-01-06
> BS07038.3prime
ATGGTCTAGAAAGCTTTTATTTTCGCGGCACCAAGTGCATCCAGAATCCG
GACCTAGGCGTAAAATTGAATCCACTCGCTGATCCCCACAGATCCTTGAT
GGTCCTTGGGGAGGCCTCGATTTTGTAATGCAGCAGTAGGTTGAAGAGCA
TACCCTTGACCTGCATCAAGGCATATCGATTTCCTATGCAATTCCTAGGT
CCCACGCCGAATGGCAAGTAGGTGTAGGGCACCATGTCACCCTTTCGCTC
TTCGCTAAATCGATCCGGGTCAAACTTTCTGGGTTCCGGGAAGTAGCGGT
CATCCAAGTGCAACCCGGAAATGGGAATGTTGATTCGGTCGCCTACCTTG
AAGTCGAACAGCTTGGTGCCATCATCATCCGTGAGCGTGTAGTCCTTGGA
GCACAGGCGATCGGTGGCGGCGGCTAGAGTCCACTTTCGAAGGGACTCGG
AGATGACCATGTCCATGTAGGTCATCTTCTGCACGGCGTCGTAAGTGAGT
GGTGCACCGTTCAGAGCTTTCTTGGTCTCGACTATCTCCTCGTATAAACG
CTCCTGGACGTCGGGATTGTAAAGCAGTTCGTAGGTTGTGGTGCAGATCA
GATTGGAGTTGTTTTCGAAGGCGGCGAAGAAGAAAATGAAGCACTGGGCC
ACGATCTCATCGTCCGTCCATTTATCCTCCGACTCATTCTTGGCCTCCAT
CAGGAGCTGGATCATGTCGGGCCTGGTGATATTGTGCTTCTCGCGGTACT
GCATGGCTTCCACCACCAAGCGAGCAAAGTAATCAACCTTGGCGGAGTCG
AAAATAGTAAGCTTCAAAAGACTGAAAAGCTTTGGCCACAAGGTGGACAG
CATGAACTTGAAGAACTGAAGTCCTCGGGAGAAACCAGCGACTGCCCGAT
CTC
BS07038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4486-PA | 1518 | Cyp9b2-RA | 651..1518 | 884..17 | 4290 | 99.7 | Minus |
CG4485-PA | 1518 | Cyp9b1-RA | 736..992 | 799..543 | 685 | 90.6 | Minus |
CG4485-PA | 1518 | Cyp9b1-RA | 1027..1106 | 508..429 | 325 | 96.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9b2-RA | 1667 | CG4486-RA | 681..1568 | 903..17 | 4385 | 99.7 | Minus |
Cyp9b1-RA | 1752 | CG4485-RA | 682..1548 | 884..18 | 1950 | 82.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7130602..7131239 | 183..820 | 3190 | 100 | Plus |
2R | 25286936 | 2R | 7128318..7128939 | 198..819 | 1595 | 83.8 | Plus |
2R | 25286936 | 2R | 7130376..7130545 | 17..186 | 850 | 100 | Plus |
2R | 25286936 | 2R | 7128042..7128209 | 18..185 | 360 | 81 | Plus |
2R | 25286936 | 2R | 7131312..7131395 | 821..903 | 340 | 96.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:05:38 has no hits.
BS07038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:00 Download gff for
BS07038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4486-PA | 631..1518 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:34 Download gff for
BS07038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4486-PA | 631..1518 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:02:48 Download gff for
BS07038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 681..1571 | 12..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:23 Download gff for
BS07038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 681..1571 | 12..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:23 Download gff for
BS07038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7130373..7130542 | 12..183 | 98 | <- | Plus |
2R | 7130603..7131239 | 184..820 | 100 | <- | Plus |
2R | 7131312..7131395 | 821..903 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:02:48 Download gff for
BS07038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3018817..3018900 | 821..903 | 96 | | Plus |
arm_2R | 3017878..3018047 | 12..183 | 98 | <- | Plus |
arm_2R | 3018108..3018744 | 184..820 | 100 | <- | Plus |
BS07038.5prime Sequence
899 bp (757 high quality bases) assembled on 2006-01-06
> BS07038.5prime
GAAGTTATCAGTCGACATGGCACTCATCGAAATTTGTCTGGCCCTTGTGG
TCATCGGTTATCTCATCTACAAATGGAGCACGGCCACCTTCAAAACCTTT
GAGGAAAGGAAGCTCTACTTCGAAAAGCCATATCCCTTTGTGGGTAATAT
GGCTGCAGCGGCCTTGCAGAAGTCGTCCTTCCAGAGACAACTCACCGAGT
TCTACGAACGCACTCGTCAACACAAACTGGTGGGCTTCTTCAATATGCGC
ACACCTATGATCACGCTAAACGACCCGGAGCTGATCAAAAAGGTCTGCGT
AAAGGACTTTGACCACTTCCCCAACCACCAGCCCTTCATCACCTCCAACG
ATCGCCTGTTCAACGACATGCTCAGCGTGATGAGGGACCAGCGGTGGAAG
CACATGAGAAACACCCTCACTCCGGTCTTCACGGCGGCCAAAATGCGCAA
CATGTTCACCCTGATGAACGAGAGCTTCGCGGAGTGCCTGCAGCACCTGG
ACAGCTCTTCGAAAACGCTTCCCGGCAGAAAGGGCTTTGAGGTGGACATG
AAGGTGATGTGCAACAAGCTCTCCAACGACATCATCGCCACTACCGCATT
CGGGCTAAAGGTTAACTCGTACGACAACCCGAAAAATGAGTTCTACGAGA
TCGGGCAGTCGCTGGTTTTCTCCCGAGGACTTCAGTTCTTCAAGTTCATG
CTGTCCACCTTGGTGCCAAAGCTTTTCAGTCTTTTGAAGCTTACTATTTT
CGACTCCGCCAAGGTTGATTACTTTGCTCGCTTGGTGGTGGAAGCCATGC
AGTACCGCGAGAAGCACAATATCACCAGGCCCGACATGATCCAGCTCCTG
ATGGAGGCCAAGAATGAGTCCGAGGATAAATGGACGGACGATGAGATCG
BS07038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4486-PA | 1518 | Cyp9b2-RA | 1..883 | 17..899 | 4390 | 99.8 | Plus |
CG4485-PA | 1518 | Cyp9b1-RA | 736..883 | 752..899 | 340 | 89.1 | Plus |
CG4485-PA | 1518 | Cyp9b1-RA | 406..464 | 422..480 | 220 | 94.9 | Plus |
CG4485-PA | 1518 | Cyp9b1-RA | 251..315 | 267..331 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9b2-RA | 1667 | CG4486-RA | 51..933 | 17..899 | 4400 | 99.9 | Plus |
Cyp9b1-RA | 1752 | CG4485-RA | 131..914 | 116..899 | 1430 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7131312..7131819 | 730..223 | 2540 | 100 | Minus |
2R | 25286936 | 2R | 7131884..7132089 | 222..17 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 7131071..7131239 | 899..731 | 830 | 99.4 | Minus |
2R | 25286936 | 2R | 7129029..7129510 | 704..223 | 745 | 77 | Minus |
2R | 25286936 | 2R | 7128772..7128939 | 899..732 | 540 | 88.1 | Minus |
Blast to na_te.dros performed 2015-02-04 02:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 663..775 | 170..291 | 112 | 59 | Plus |
BS07038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:02 Download gff for
BS07038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4486-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:36 Download gff for
BS07038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4486-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:46:37 Download gff for
BS07038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 46..933 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:35 Download gff for
BS07038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 46..933 | 9..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:35 Download gff for
BS07038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7131071..7131239 | 731..899 | 99 | <- | Minus |
2R | 7131312..7131819 | 223..730 | 100 | <- | Minus |
2R | 7131884..7132094 | 9..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:46:37 Download gff for
BS07038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3018576..3018744 | 731..899 | 99 | <- | Minus |
arm_2R | 3018817..3019324 | 223..730 | 100 | <- | Minus |
arm_2R | 3019389..3019599 | 9..222 | 98 | | Minus |
BS07038.complete Sequence
1550 bp (1550 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635700
> BS07038.complete
GAAGTTATCAGTCGACATGGCACTCATCGAAATTTGTCTGGCCCTTGTGG
TCATCGGTTATCTCATCTACAAATGGAGCACGGCCACCTTCAAAACCTTT
GAGGAAAGGAAGCTCTACTTCGAAAAGCCATATCCCTTTGTGGGTAATAT
GGCTGCAGCGGCCTTGCAGAAGTCGTCCTTCCAGAGACAACTCACCGAGT
TCTACGAACGCACTCGTCAACACAAACTGGTGGGCTTCTTCAATATGCGC
ACACCTATGATCACGCTAAACGACCCGGAGCTGATCAAAAAGGTCTGCGT
AAAGGACTTTGACCACTTCCCCAACCACCAGCCCTTCATCACCTCCAACG
ATCGCCTGTTCAACGACATGCTCAGCGTGATGAGGGACCAGCGGTGGAAG
CACATGAGAAACACCCTCACTCCGGTCTTCACGGCGGCCAAAATGCGCAA
CATGTTCACCCTGATGAACGAGAGCTTCGCGGAGTGCCTGCAGCACCTGG
ACAGCTCTTCGAAAACGCTTCCCGGCAGAAAGGGCTTTGAGGTGGACATG
AAGGTGATGTGCAACAAGCTCTCCAACGACATCATCGCCACTACCGCATT
CGGGCTAAAGGTTAACTCGTACGACAACCCGAAAAATGAGTTCTACGAGA
TCGGGCAGTCGCTGGTTTTCTCCCGAGGACTTCAGTTCTTCAAGTTCATG
CTGTCCACCTTGGTGCCAAAGCTTTTCAGTCTTTTGAAGCTTACTATTTT
CGACTCCGCCAAGGTTGATTACTTTGCTCGCTTGGTGGTGGAAGCCATGC
AGTACCGCGAGAAGCACAATATCACCAGGCCCGACATGATCCAGCTCCTG
ATGGAGGCCAAGAATGAGTCGGAGGATAAATGGACGGACGATGAGATCGT
GGCCCAGTGCTTCATTTTCTTCTTCGCCGCCTTCGAAAACAACTCCAATC
TGATCTGCACCACAACCTACGAACTGCTTTACAATCCCGACGTCCAGGAG
CGTTTATACGAGGAGATAGTCGAGACCAAGAAAGCTCTGAACGGTGCACC
ACTCACTTACGACGCCGTGCAGAAGATGACCTACATGGACATGGTCATCT
CCGAGTCCCTTCGAAAGTGGACTCTAGCCGCCGCCACCGATCGCCTGTGC
TCCAAGGACTACACGCTCACGGATGATGATGGCACCAAGCTGTTCGACTT
CAAGGTAGGCGACCGAATCAACATTCCCATTTCCGGGTTGCACTTGGATG
ACCGCTACTTCCCGGAACCCAGAAAGTTTGACCCGGATCGATTTAGCGAA
GAGCGAAAGGGTGACATGGTGCCCTACACCTACTTGCCATTCGGCGTGGG
ACCTAGGAATTGCATAGGAAATCGATATGCCTTGATGCAGGTCAAGGGTA
TGCTCTTCAACCTACTGCTGCATTACAAAATCGAGGCCTCCCCAAGGACC
ATCAAGGATCTGTGGGGATCAGCGAGTGGATTCAATTTTACGCCTAGGTC
CGGATTCTGGATGCACTTGGTGCCGCGAAAATAAAAGCTTTCTAGACCAT
BS07038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9b2-RA | 1518 | CG4486-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Cyp9b1-RA | 1518 | CG4485-PA | 100..1517 | 116..1533 | 2785 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9b2-RA | 1667 | CG4486-RA | 51..1568 | 17..1534 | 7590 | 100 | Plus |
Cyp9b1-RA | 1752 | CG4485-RA | 131..1548 | 116..1533 | 2785 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7130602..7131239 | 1368..731 | 3190 | 100 | Minus |
2R | 25286936 | 2R | 7131312..7131819 | 730..223 | 2540 | 100 | Minus |
2R | 25286936 | 2R | 7128318..7128939 | 1353..732 | 1595 | 83.8 | Minus |
2R | 25286936 | 2R | 7131884..7132089 | 222..17 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 7130376..7130545 | 1534..1365 | 850 | 100 | Minus |
2R | 25286936 | 2R | 7129029..7129510 | 704..223 | 745 | 77 | Minus |
2R | 25286936 | 2R | 7128042..7128209 | 1533..1366 | 360 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:27:10 has no hits.
BS07038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:17 Download gff for
BS07038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 1..1518 | 17..1534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:32 Download gff for
BS07038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 42..1567 | 9..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:43:59 Download gff for
BS07038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 51..1566 | 17..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:17 Download gff for
BS07038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 42..1567 | 9..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:40 Download gff for
BS07038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 51..1566 | 17..1532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:40 Download gff for
BS07038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7130378..7130542 | 1368..1532 | 100 | <- | Minus |
2R | 7130603..7131239 | 731..1367 | 100 | <- | Minus |
2R | 7131312..7131819 | 223..730 | 100 | <- | Minus |
2R | 7131884..7132089 | 17..222 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:43:59 Download gff for
BS07038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3017883..3018047 | 1368..1532 | 100 | <- | Minus |
arm_2R | 3018108..3018744 | 731..1367 | 100 | <- | Minus |
arm_2R | 3018817..3019324 | 223..730 | 100 | <- | Minus |
arm_2R | 3019389..3019594 | 17..222 | 100 | | Minus |
BS07038.pep Sequence
Translation from 16 to 1533
> BS07038.pep
MALIEICLALVVIGYLIYKWSTATFKTFEERKLYFEKPYPFVGNMAAAAL
QKSSFQRQLTEFYERTRQHKLVGFFNMRTPMITLNDPELIKKVCVKDFDH
FPNHQPFITSNDRLFNDMLSVMRDQRWKHMRNTLTPVFTAAKMRNMFTLM
NESFAECLQHLDSSSKTLPGRKGFEVDMKVMCNKLSNDIIATTAFGLKVN
SYDNPKNEFYEIGQSLVFSRGLQFFKFMLSTLVPKLFSLLKLTIFDSAKV
DYFARLVVEAMQYREKHNITRPDMIQLLMEAKNESEDKWTDDEIVAQCFI
FFFAAFENNSNLICTTTYELLYNPDVQERLYEEIVETKKALNGAPLTYDA
VQKMTYMDMVISESLRKWTLAAATDRLCSKDYTLTDDDGTKLFDFKVGDR
INIPISGLHLDDRYFPEPRKFDPDRFSEERKGDMVPYTYLPFGVGPRNCI
GNRYALMQVKGMLFNLLLHYKIEASPRTIKDLWGSASGFNFTPRSGFWMH
LVPRK*
BS07038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9b2-PA | 505 | CG4486-PA | 1..505 | 1..505 | 2668 | 100 | Plus |
Cyp9b1-PA | 505 | CG4485-PA | 1..505 | 1..505 | 2096 | 74.7 | Plus |
Cyp9f2-PA | 516 | CG11466-PA | 2..515 | 3..504 | 1120 | 43.5 | Plus |
Cyp9c1-PA | 522 | CG3616-PA | 1..519 | 1..504 | 1066 | 42 | Plus |
Cyp9h1-PA | 518 | CG17577-PA | 6..518 | 6..505 | 1033 | 40.5 | Plus |