Clone Sequence Records
BS07039.3prime Sequence
930 bp (869 high quality bases) assembled on 2006-01-06
> BS07039.3prime
ATGGTCTAGAAAGCTTTCATGGGTCTCGAAAGGAGATGGGCGGAAAAAGC
CGCGGCCACTGCACGAACTCGACGCCGTAGTGCAGGATGCCCGTGGCACT
GACAGCGATCATTGCGCCCCAGAAGAGCATGAACAGCAGGTTCTCCGTGT
TAAACTCGGCCGGATAGGTCATCGTGATCATGAACATGGCCACAGCCACA
AGCAGCACCGAGGGGAAGGTGAAGAACCGCCAGCCATGCTTCGACTCCAG
CGGCGATGGCACGGCACCGCCCTCGTTGTCGTTGACCAGATACTTTCCAA
GGAAAAGATCGATGCTGTCTTGCCGCTGGCCATCGGCGAAGTTGTTCAGA
TAGTAGCGCATCAGCGAGTTCTTGCCGTCCTGCATGGCACCAGACTTGGT
CCTCTTGCCCGTCCTGGTGAAGTCGGTCTTGAGCGCACACGTTCCGGAAT
ATTGTAGCGACACCAGATCCGCGTTGTCCGCCCACACGCCCTTGAAAATG
CTCTCGAAAATGTCGGAGGCATGTTCCACTTTCTGGCCCACATGAAGCAC
TCCCAGCTTCTGGAGCACCGCAGTGAGGGACCTGCGGGCCAGCATGCTCT
GCACGACGTTCGTCCTATCGAGACAGTCGATACAATTCGTTCGGAAGACA
CCAGTCTGCGTGGACACCAATTTGCCGTCGTCGAAGACATGATAGACACC
GAACTGATCCTGCTCATGGGCGAGGCGATCGATGAGTATGTTCAGCCGGT
CCCAGCGCATCTTACGGCACTCGCTGTGGAAGTCGAAAGACTCGTATCGC
ACTTGTGGATTTCCCATTTCTCGAACCAGGCGGGCATAGGTCGCCTCGAG
CTCGCCTTCGGCACCTTTGTGATCCACTAGATTCACAGCCACATTGTTGC
CATACAGCCGGATCTGTTCCTTAAAGTGGA
BS07039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9128-PA | 1779 | Sac1-RA | 866..1779 | 930..17 | 4570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sac1-RB | 2327 | CG9128-RB | 1032..1945 | 930..17 | 4570 | 100 | Minus |
| Sac1-RA | 2365 | CG9128-RA | 1070..1983 | 930..17 | 4570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1249156..1250069 | 930..17 | 4570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:59:48 has no hits.
BS07039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:04 Download gff for
BS07039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-PA | 867..1779 | 17..929 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:37 Download gff for
BS07039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9128-PA | 867..1779 | 17..929 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:02:36 Download gff for
BS07039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 1071..1987 | 11..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:12:50 Download gff for
BS07039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 1071..1987 | 11..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:12:50 Download gff for
BS07039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1249157..1250073 | 11..929 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:02:36 Download gff for
BS07039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1249157..1250073 | 11..929 | 99 | | Minus |
BS07039.5prime Sequence
868 bp (852 high quality bases) assembled on 2006-01-06
> BS07039.5prime
GAAGTTATCAGTCGACATGGACAGCAGGGAGGAGAACGCCGTGTACGATG
ACATGAACCTGTACATCGCACCGCAGAGCTTCATCATCGAGCCGAATGGA
GGAGATGAGTTGCTGGTCATCGGGCGCCACGACAAAGTCACCAGGGTTCA
GCCAGCGAGCGGAGGTCTTGTGGCCAACCTTCGCCCCACCAGGAGGATTT
GTGGTGTGCTGGGAACCATTCACCTACTGAGCTGCGACTACCTTCTGGTG
GCGACCCACCGCCTCTTCGTGGGCGTGCTCAATGGCGCAGTTGTGTGGAG
ATTAGCGGGCTATGACATCATACCTTACATTCCGAATTCCTTCCAGCGCA
AGGAGAACGAAAACTACTTGCGACTGCTACGCCAGACACTTGACACCAAG
TTCTTTTACTTCTCCTACCGCTACGACCTTACCAATTCGCTGCAGCGACA
GCGGGAGGTGGCACAATCGCGGCCTGAAGTATCCGGGTTGCTCCAGCGCG
CTGAGCAGCGATTCGTTTGGAATGGCTATGTGCTGCGGCAGTTCAACTGC
GATAAGATGGAGAAGTTCCAGCTGCCACTCGTCCTGGGCTTCGTGTCTAT
CAACCAGGTGCAGATCAACGGGCAGACATTCTTCTGGAGCATCATCACCA
GGCGTTCCGTGCAGCGGGCGGGCACACGGCTCTTCTGCCGAGGCAGCGAC
GAGCAGGGCCATGTTGCGAACTTCGTAGAGACCGAGCAAATAGTGGAGTT
CAACGGGCAGCTGACTGGATTCGTGCAGACACGAGGCAGCATGCCCTTCC
ACTGGCACCAGCTGCCCAATTTGCGCTATAAGCCACGACCCGTTCTGGTG
CCGGGCAAGGATCATTTG
BS07039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9128-PA | 1779 | Sac1-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sac1-RB | 2327 | CG9128-RB | 166..1018 | 16..868 | 4265 | 100 | Plus |
| Sac1-RA | 2365 | CG9128-RA | 204..1056 | 16..868 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1248290..1249142 | 16..868 | 4265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:37:31 has no hits.
BS07039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:05 Download gff for
BS07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:45:38 Download gff for
BS07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9128-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:02:12 Download gff for
BS07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 204..1056 | 16..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:30 Download gff for
BS07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 204..1056 | 16..868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:30 Download gff for
BS07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1248290..1249142 | 16..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:02:12 Download gff for
BS07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1248290..1249142 | 16..868 | 100 | | Plus |
BS07039.complete Sequence
1811 bp assembled on 2007-10-31
GenBank Submission: FJ635701
> BS07039.complete
GAAGTTATCAGTCGACATGGACAGCAGGGAGGAGAACGCCGTGTACGATG
ACATGAACCTGTACATCGCACCGCAGAGCTTCATCATCGAGCCGAATGGA
GGAGATGAGTTGCTGGTCATCGGGCGCCACGACAAAGTCACCAGGGTTCA
GCCAGCGAGCGGAGGTCTTGTGGCCAACCTTCGCCCCACCAGGAGGATTT
GTGGTGTGCTGGGAACCATTCACCTACTGAGCTGCGACTACCTTCTGGTG
GCGACCCACCGCCTCTTCGTGGGCGTGCTCAATGGCGCAGTTGTGTGGAG
ATTAGCGGGCTATGACATCATACCTTACATTCCGAATTCCTTCCAGCGCA
AGGAGAACGAAAACTACTTGCGACTGCTACGCCAGACACTTGACACCAAG
TTCTTTTACTTCTCCTACCGCTACGACCTTACCAATTCGCTGCAGCGACA
GCGGGAGGTGGCACAATCGCGGCCTGAAGTATCCGGGTTGCTCCAGCGCG
CTGAGCAGCGATTCGTTTGGAATGGCTATGTGCTGCGGCAGTTCAACTGC
GATAAGATGGAGAAGTTCCAGCTGCCACTCGTCCTGGGCTTCGTGTCTAT
CAACCAGGTGCAGATCAACGGGCAGACATTCTTCTGGAGCATCATCACCA
GGCGTTCCGTGCAGCGGGCGGGCACACGGCTCTTCTGCCGAGGCAGCGAC
GAGCAGGGCCATGTTGCGAACTTCGTAGAGACCGAGCAAATAGTGGAGTT
CAACGGGCAGCTGACTGGATTCGTGCAGACACGAGGCAGCATGCCCTTCC
ACTGGCACCAGCTGCCCAATTTGCGCTATAAGCCACGACCCGTTCTGGTG
CCGGGCAAGGATCATTTGGCCGCCTGCGGGCTCCACTTTAAGGAACAGAT
CCGGCTGTATGGCAACAATGTGGCTGTGAATCTAGTGGATCACAAAGGTG
CCGAAGGCGAGCTCGAGGCGACCTATGCCCGCCTGGTTCGAGAAATGGGA
AATCCACAAGTGCGATACGAGTCTTTCGACTTCCACAGCGAGTGCCGTAA
GATGCGCTGGGACCGGCTGAACATACTCATCGATCGCCTCGCCCATGAGC
AGGATCAGTTCGGTGTCTATCATGTCTTCGACGACGGCAAATTGGTGTCC
ACGCAGACTGGTGTCTTCCGAACGAATTGTATCGACTGTCTCGATAGGAC
GAACGTCGTGCAGAGCATGCTGGCCCGCAGGTCCCTCACTGCGGTGCTCC
AGAAGCTGGGAGTGCTTCATGTGGGCCAGAAAGTGGAACATGCCTCCGAC
ATTTTCGAGAGCATTTTCAAGGGCGTGTGGGCGGACAACGCGGATCTGGT
GTCGCTACAATATTCCGGAACGTGTGCGCTCAAGACCGACTTCACCAGGA
CGGGCAAGAGGACCAAGTCTGGTGCCATGCAGGACGGCAAGAACTCGCTG
ATGCGCTACTATCTGAACAACTTCGCCGATGGCCAGCGGCAAGACAGCAT
CGATCTTTTCCTTGGAAAGTATCTGGTCAACGACAACGAGGGCGGTGCCG
TGCCATCGCCGCTGGAGTCGAAGCATGGCTGGCGGTTCTTCACCTTCCCC
TCGGTGCTGCTTGTGGCTGTGGCCATGTTCATGATCACGATGACCTATCC
GGCCGAGTTTAACACGGAGAACCTGCTGTTCATGCTCTTCTGGGGCGCAA
TGATCGCTGTCAGTGCCACGGGCATCCTGCACTACGGCGTCGAGTTCGTG
CAGTGGCCGCGGCTTTTTCCGCCCATCTCCTTTCGAGACCCATGAAAGCT
TTCTAGACCAT
BS07039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sac1-RB | 1779 | CG9128-PB | 1..1779 | 17..1795 | 8895 | 100 | Plus |
| Sac1-RA | 1779 | CG9128-PA | 1..1779 | 17..1795 | 8895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sac1-RB | 2327 | CG9128-RB | 166..1945 | 16..1795 | 8900 | 100 | Plus |
| Sac1-RA | 2365 | CG9128-RA | 204..1983 | 16..1795 | 8900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1248290..1250069 | 16..1795 | 8900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:14:08 has no hits.
BS07039.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:36 Download gff for
BS07039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 1..1779 | 17..1795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:53 Download gff for
BS07039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 205..1988 | 16..1801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:24 Download gff for
BS07039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 205..1982 | 17..1794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:54 Download gff for
BS07039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 206..1983 | 17..1794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:08 Download gff for
BS07039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 205..1982 | 17..1794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:08 Download gff for
BS07039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1248291..1250068 | 17..1794 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:24 Download gff for
BS07039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1248291..1250068 | 17..1794 | 100 | | Plus |
BS07039.pep Sequence
Translation from 16 to 1794
> BS07039.pep
MDSREENAVYDDMNLYIAPQSFIIEPNGGDELLVIGRHDKVTRVQPASGG
LVANLRPTRRICGVLGTIHLLSCDYLLVATHRLFVGVLNGAVVWRLAGYD
IIPYIPNSFQRKENENYLRLLRQTLDTKFFYFSYRYDLTNSLQRQREVAQ
SRPEVSGLLQRAEQRFVWNGYVLRQFNCDKMEKFQLPLVLGFVSINQVQI
NGQTFFWSIITRRSVQRAGTRLFCRGSDEQGHVANFVETEQIVEFNGQLT
GFVQTRGSMPFHWHQLPNLRYKPRPVLVPGKDHLAACGLHFKEQIRLYGN
NVAVNLVDHKGAEGELEATYARLVREMGNPQVRYESFDFHSECRKMRWDR
LNILIDRLAHEQDQFGVYHVFDDGKLVSTQTGVFRTNCIDCLDRTNVVQS
MLARRSLTAVLQKLGVLHVGQKVEHASDIFESIFKGVWADNADLVSLQYS
GTCALKTDFTRTGKRTKSGAMQDGKNSLMRYYLNNFADGQRQDSIDLFLG
KYLVNDNEGGAVPSPLESKHGWRFFTFPSVLLVAVAMFMITMTYPAEFNT
ENLLFMLFWGAMIAVSATGILHYGVEFVQWPRLFPPISFRDP*
BS07039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sac1-PB | 592 | CG9128-PB | 1..592 | 1..592 | 3127 | 100 | Plus |
| Sac1-PA | 592 | CG9128-PA | 1..592 | 1..592 | 3127 | 100 | Plus |
| CG7956-PG | 987 | CG7956-PG | 184..572 | 106..507 | 699 | 38.9 | Plus |
| CG7956-PA | 1000 | CG7956-PA | 184..572 | 106..507 | 699 | 38.9 | Plus |
| CG7956-PE | 662 | CG7956-PE | 184..568 | 106..503 | 692 | 39.1 | Plus |
