Clone Sequence Records
BS07047.3prime Sequence
657 bp (656 high quality bases) assembled on 2006-01-06
> BS07047.3prime
ATGGTCTAGAAAGCTTCTAGCAGGCGCAGCCGCCCTCGGGATCCTTTGTC
TCGTTGGGTGAGTCCTTTAGCACAACCTCCTGCATGTCCTCGGAGGGCTT
GTTCTCCGTGGAATCCATGCCGGGCAGTGCCGCGGCCACCCGTCGGAACA
ATTGCTTCACATTGTAGCCGGCCTTGGCGCTTGTCTCGATGAACATCACG
TTAAGCTCCTTCGCCTTGCGCTCACCCTCCTCGGTGGACACCTGACGCTT
GTCGGAGAGATCCGTCTTGTTGCCCACCAGCATGATGATGACGTCGCTAC
CCCGCTCCGTGCGCACGTCATCGATCCACTTGGAGGTCTGGTGGAACGAG
TTGGTGTTGGTGATATCGTAAACGACCACTGCCACCGTGGAGTCGCGTAT
GTACGAGGGTATCAGCGAGCGGAATCGCTCCTGTCCCGCCGTATCCCACA
GCTGCAGGCGCACAGTGCGATCCTCCAGGTACATGGTCTTCGATAGGAAA
TCAATTCCGATCGTCGCCTGGTACGTGTTGTCGAAGCTGTCGTACATGAA
GCGCGTAATCAGCGAGGTCTTGCCCACACTCTGCTCGCCGAGGAAGACGA
GCTTGAACTTCCGCAGCGGATTGCCAAAATCTCCGGATGACATGTCGACT
GATAACT
BS07047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6601-PA | 627 | Rab6-RA | 1..627 | 643..17 | 3135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab6-RB | 1896 | CG6601-RB | 318..946 | 643..15 | 3145 | 100 | Minus |
| Rab6-RA | 1830 | CG6601-RA | 318..946 | 643..15 | 3145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12108171..12108799 | 15..643 | 3145 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:00:20 has no hits.
BS07047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:21 Download gff for
BS07047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-PA | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:01 Download gff for
BS07047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6601-PA | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:02 Download gff for
BS07047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 312..946 | 15..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:00 Download gff for
BS07047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 312..946 | 15..650 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:00 Download gff for
BS07047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12108171..12108805 | 15..650 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:02 Download gff for
BS07047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12108171..12108805 | 15..650 | 99 | | Plus |
BS07047.5prime Sequence
657 bp (656 high quality bases) assembled on 2006-01-06
> BS07047.5prime
GAAGTTATCAGTCGACATGTCATCCGGAGATTTTGGCAATCCGCTGCGGA
AGTTCAAGCTCGTCTTCCTCGGCGAGCAGAGTGTGGGCAAGACCTCGCTG
ATTACGCGCTTCATGTACGACAGCTTCGACAACACGTACCAGGCGACGAT
CGGAATTGATTTCCTATCGAAGACCATGTACCTGGAGGATCGCACTGTGC
GCCTGCAGCTGTGGGATACGGCGGGACAGGAGCGATTCCGCTCGCTGATA
CCCTCGTACATACGCGACTCCACGGTGGCAGTGGTCGTTTACGATATCAC
CAACACCAACTCGTTCCACCAGACCTCCAAGTGGATCGATGACGTGCGCA
CGGAGCGGGGTAGCGACGTCATCATCATGCTGGTGGGCAACAAGACGGAT
CTCTCCGACAAGCGTCAGGTGTCCACCGAGGAGGGTGAGCGCAAGGCGAA
GGAGCTTAACGTGATGTTCATCGAGACAAGCGCCAAGGCCGGCTACAATG
TGAAGCAATTGTTCCGACGGGTGGCCGCGGCACTGCCCGGCATGGATTCC
ACGGAGAACAAGCCCTCCGAGGACATGCAGGAGGTTGTGCTAAAGGACTC
ACCCAACGAGACAAAGGATCCCGAGGGCGGCTGCGCCTGCTAGAAGCTTT
CTAGACC
BS07047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6601-PA | 627 | Rab6-RA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab6-RB | 1896 | CG6601-RB | 318..946 | 17..645 | 3145 | 100 | Plus |
| Rab6-RA | 1830 | CG6601-RA | 318..946 | 17..645 | 3145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12108171..12108799 | 645..17 | 3145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:23:50 has no hits.
BS07047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:22 Download gff for
BS07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-PA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:03 Download gff for
BS07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6601-PA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:14 Download gff for
BS07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 312..946 | 10..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:00 Download gff for
BS07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 312..946 | 10..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:00 Download gff for
BS07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12108171..12108805 | 10..645 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:14 Download gff for
BS07047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12108171..12108805 | 10..645 | 99 | | Minus |
BS07047.complete Sequence
659 bp (659 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635703
> BS07047.complete
GAAGTTATCAGTCGACATGTCATCCGGAGATTTTGGCAATCCGCTGCGGA
AGTTCAAGCTCGTCTTCCTCGGCGAGCAGAGTGTGGGCAAGACCTCGCTG
ATTACGCGCTTCATGTACGACAGCTTCGACAACACGTACCAGGCGACGAT
CGGAATTGATTTCCTATCGAAGACCATGTACCTGGAGGATCGCACTGTGC
GCCTGCAGCTGTGGGATACGGCGGGACAGGAGCGATTCCGCTCGCTGATA
CCCTCGTACATACGCGACTCCACGGTGGCAGTGGTCGTTTACGATATCAC
CAACACCAACTCGTTCCACCAGACCTCCAAGTGGATCGATGACGTGCGCA
CGGAGCGGGGTAGCGACGTCATCATCATGCTGGTGGGCAACAAGACGGAT
CTCTCCGACAAGCGTCAGGTGTCCACCGAGGAGGGTGAGCGCAAGGCGAA
GGAGCTTAACGTGATGTTCATCGAGACAAGCGCCAAGGCCGGCTACAATG
TGAAGCAATTGTTCCGACGGGTGGCCGCGGCACTGCCCGGCATGGATTCC
ACGGAGAACAAGCCCTCCGAGGACATGCAGGAGGTTGTGCTAAAGGACTC
ACCCAACGAGACAAAGGATCCCGAGGGCGGCTGCGCCTGCTAGAAGCTTT
CTAGACCAT
BS07047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab6-RB | 627 | CG6601-PB | 1..627 | 17..643 | 3135 | 100 | Plus |
| Rab6-RA | 627 | CG6601-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab6-RB | 1896 | CG6601-RB | 318..946 | 17..645 | 3145 | 100 | Plus |
| Rab6-RA | 1830 | CG6601-RA | 318..946 | 17..645 | 3145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12108171..12108799 | 645..17 | 3145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:32:38 has no hits.
BS07047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:54 Download gff for
BS07047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:48 Download gff for
BS07047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 320..954 | 10..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:51 Download gff for
BS07047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 318..944 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:54 Download gff for
BS07047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 320..954 | 10..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:41 Download gff for
BS07047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 318..944 | 17..643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:41 Download gff for
BS07047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12108173..12108799 | 17..643 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:51 Download gff for
BS07047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12108173..12108799 | 17..643 | 100 | | Minus |
BS07047.pep Sequence
Translation from 16 to 642
> BS07047.pep
MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFL
SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSF
HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM
FIETSAKAGYNVKQLFRRVAAALPGMDSTENKPSEDMQEVVLKDSPNETK
DPEGGCAC*
BS07047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab6-PB | 208 | CG6601-PB | 1..208 | 1..208 | 1067 | 100 | Plus |
| Rab6-PA | 208 | CG6601-PA | 1..208 | 1..208 | 1067 | 100 | Plus |
| Rab10-PA | 204 | CG17060-PA | 10..203 | 13..208 | 414 | 42.3 | Plus |
| Rab5-PI | 219 | CG3664-PI | 20..217 | 3..206 | 411 | 40.2 | Plus |
| Rab5-PH | 219 | CG3664-PH | 20..217 | 3..206 | 411 | 40.2 | Plus |
