Clone Sequence Records
BS07048.3prime Sequence
964 bp (791 high quality bases) assembled on 2006-01-06
> BS07048.3prime
ATGGTCTAGAAAGCTTTTACTTGCTGGCCTCCTGCTGTTCGAACAGAGGA
TACTGTTCGGTGACACTCTCCCAGGTGGTTCTCGCCGTCGACAAGTCCTT
GACGACGCCCACAACCTCCTCCAGACCGACGCGCACCTGTTTCATAGTAT
TCCGATCTCGCAGAGTCACCGTATGCGGTTCCTTTAGAGTGTCGAAGTCC
ACGGTGATGCCATAGGGTATGGCAATCTCATCCGTGCGGGCATACCGCCT
GCCAATGGATCCACTGGAGTCGTCCACCTTGTGCGAAAGTTCCGCCTTGG
TCAGGGCAGAAGACAGTTTCTGAGTATAAGGTTGAAAGTCGGTGTTGTTG
GACAGCGGAAGGATGGAGCACTTGATGGGCGCCACCAGAGGCGGTAGCGT
AAAGTAGCACCGCTGCTCGTCGCCGTCGCGGCATTGGAAACTGTGCTCCA
ACAGGGAGTACATGATGCGACCAATGCCGAATGAAGGCTCAACCACACTC
GGGATGAACTCCTCCACATGGACCGTTTTCGTAGAGTGCTTAACGCTGAT
GGTGTCCTTTCCGAGATCGTGGCTTTGGCCATCGGCCGTGGTCAGTTTGT
ATTGACCATCGCCAGCCAGCTGTTCCTCTACCTTGGTTATCTCCTCCAGC
GAAAGCTTAGCCAACGCATCCGTGATGTTCTTTGCCTCCTTCTTGAAGGT
CTTTCCGAGAGCCTGCTTGTTTGGCACAATCTCGCTGACCTCGACCGTTT
TGGGAGCCGGCAGACGCTTCTCGGCCACCAAACGCACACCTGTGGCGGCC
GTATGCTGTCCCAAATCGTAGGCACTGCGATCCGCACATCCTACGCACTC
CACCCATCCGTAGGAGGTAAGATTTTCGGCATCCCAGCAATCGCATGCAT
AGTGAGCCATCTCATGGGACATGTGCTGCCGGAATCGCAAGCACTCCGGT
TTGAATACATTGGC
BS07048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6778-PA | 2040 | Aats-gly-RA | 1103..2040 | 954..17 | 4640 | 99.7 | Minus |
| CG6778-PB | 2298 | Aats-gly-RB | 1361..2298 | 954..17 | 4640 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-RC | 2476 | CG6778-RC | 1412..2349 | 954..17 | 4660 | 99.8 | Minus |
| Aats-gly-RB | 2545 | CG6778-RB | 1481..2418 | 954..17 | 4660 | 99.8 | Minus |
| Aats-gly-RA | 2457 | CG6778-RA | 1393..2330 | 954..17 | 4660 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15096622..15097559 | 954..17 | 4660 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:59:26 has no hits.
BS07048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:23 Download gff for
BS07048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6778-PB | 1351..2298 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:04 Download gff for
BS07048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6778-PB | 1351..2298 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:09:09 Download gff for
BS07048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 1383..2336 | 11..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:11 Download gff for
BS07048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 1383..2336 | 11..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:11 Download gff for
BS07048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15096612..15097565 | 11..964 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:09:09 Download gff for
BS07048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15089712..15090665 | 11..964 | 99 | | Minus |
BS07048.5prime Sequence
825 bp (824 high quality bases) assembled on 2006-01-06
> BS07048.5prime
GAAGTTATCAGTCGACATGTCGAATCCCGAGATTGAGGCTCAACTTGCCC
CATTGAGGGAACGAGTTCAGGAGCAGGGTAACCTGGTGAGGGATCTCAAG
GCGAAGGGTGCCCCCGAGATCGATGTGAAAAAGGCAGTAGCCGAGCTGAA
GGCACGCAAGAAGCTGCTGGAGGACAAAGAGCTCGCCCTGACCCCCAGTG
TCGTTAGTTTCGATCGCGCGAAGATGGAGGATCTACTCAAGCGTCGCTTC
TTCTACGACCAGAGTTTCGCAATTTATGGCGGCATCACCGGCCAGTACGA
TTTTGGACCCATGGGCTGTGCCCTCAAGTCCAACATTCTGGCCCTATGGC
GTCAGTATTTCGCCCTCGAAGAGCAAATGCTGGAGGTGGACTGCTCTATT
CTGACTCCCGAACCTGTGCTCAAAGCCTCTGGTCATGTGGAGCGTTTCGC
TGATCTGATGGTCAAGGATGTCAAGACCGGCGAGTGCTTCCGCCTGGATC
ATCTCATTAAGCAGGCTTTGGAAAAGCTATCTAAGGCCAAGGATGCAACT
CCCGCCCTGCAGGCCGAGTGTGAGGATATTATCATTAAACTGGATGGCCT
GAACAAACAGGAATTGGCTGGTGTCCTGGCCAAATACAACATCAAATCTC
CATTAACCGGCAATGATTTAACAGAACCGATTGAGTTCAACCTGATGTTT
GCCACCCAAATTGGACCCACTGGCTTGGTCAAGGGATTCCTGCGGCCCGA
AACTGCCCAGGGTATCTTCGTCAACTTCAAGCGACTGCTGGAATTCAATC
AAGGCAAGCTTCCCTTCGCTGTGGC
BS07048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6778-PB | 2298 | Aats-gly-RB | 258..1067 | 16..825 | 4050 | 100 | Plus |
| CG6778-PA | 2040 | Aats-gly-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-RC | 2476 | CG6778-RC | 309..1118 | 16..825 | 4050 | 100 | Plus |
| Aats-gly-RB | 2545 | CG6778-RB | 378..1187 | 16..825 | 4050 | 100 | Plus |
| Aats-gly-RA | 2457 | CG6778-RA | 290..1099 | 16..825 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15095519..15096328 | 16..825 | 4050 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 04:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAHRE | 10463 | TAHRE OSV 10463bp | 1026..1067 | 680..721 | 111 | 73.8 | Plus |
BS07048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:24 Download gff for
BS07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6778-PB | 254..1067 | 12..825 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:05 Download gff for
BS07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6778-PB | 254..1067 | 12..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:29 Download gff for
BS07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 286..1099 | 12..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:17 Download gff for
BS07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 286..1099 | 12..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:17 Download gff for
BS07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15095515..15096328 | 12..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:29 Download gff for
BS07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15088615..15089428 | 12..825 | 99 | | Plus |
BS07048.complete Sequence
2072 bp assembled on 2008-01-02
GenBank Submission: FJ635704
> BS07048.complete
GAAGTTATCAGTCGACATGTCGAATCCCGAGATTGAGGCTCAACTTGCCC
CATTGAGGGAACGAGTTCAGGAGCAGGGTAACCTGGTGAGGGATCTCAAG
GCGAAGGGTGCCCCCGAGATCGATGTGAAAAAGGCAGTAGCCGAGCTGAA
GGCACGCAAGAAGCTGCTGGAGGACAAAGAGCTCGCCCTGACCCCCAGTG
TCGTTAGTTTCGATCGCGCGAAGATGGAGGATCTACTCAAGCGTCGCTTC
TTCTACGACCAGAGTTTCGCAATTTATGGCGGCATCACCGGCCAGTACGA
TTTTGGACCCATGGGCTGTGCCCTCAAGTCCAACATTCTGGCCCTATGGC
GTCAGTATTTCGCCCTCGAAGAGCAAATGCTGGAGGTGGACTGCTCTATT
CTGACTCCCGAACCTGTGCTCAAAGCCTCTGGTCATGTGGAGCGTTTCGC
TGATCTGATGGTCAAGGATGTCAAGACCGGCGAGTGCTTCCGCCTGGATC
ATCTCATTAAGCAGGCTTTGGAAAAGCTATCTAAGGCCAAGGATGCAACT
CCCGCCCTGCAGGCCGAGTGTGAGGATATTATCATTAAACTGGATGGCCT
GAACAAACAGGAATTGGCTGGTGTCCTGGCCAAATACAACATCAAATCTC
CATTAACCGGCAATGATTTAACAGAACCGATTGAGTTCAACCTGATGTTT
GCCACCCAAATTGGACCCACTGGCTTGGTCAAGGGATTCCTGCGGCCCGA
AACTGCCCAGGGTATCTTCGTCAACTTCAAGCGACTGCTGGAATTCAATC
AAGGCAAGCTTCCCTTCGCTGTGGCTCAAATTGGCAACTCCTTCCGCAAT
GAAATCTCACCCCGATCGGGATTGATCCGTGTGCGAGAGTTCACCATGGC
AGAGATTGAACATTTCTGTGATCCCGTGCTCAAGGACCATCCCAAATTTG
GCAACATCAAATCGGAAAAGTTGACCCTTTACTCGGCGTGCAACCAGATG
GATGGAAAGTCTGCCGCTCAGGTGCAAATCGGCGAAGCAGTGGCATCCAA
ACTGGTGGCTAATGAGACACTTGGTTACTATATGGCCCGCATTCAGCAGT
TCCTGTTGGCCATTGGTATCAAACCGGAGTGCTTGCGATTCCGGCAGCAC
ATGTCCAATGAGATGGCTCACTATGCATGCGATTGCTGGGATGCCGAAAT
TCTTACCTCCTACGGATGGGTGGAGTGCGTAGGATGTGCGGATCGCAGTG
CCTACGATTTGGGACAGCATACGGCCGCCACAGGTGTGCGTTTGGTGGCC
GAGAAGCGTCTGCCGGCTCCCAAAACGGTCGAGGTCAGCGAGATTGTGCC
AAACAAGCAGGCTCTCGGAAAGACCTTCAAGAAGGAGGCAAAGAACATCA
CGGATGCGTTGGCTAAGCTTTCGCTGGAGGAGATAACCAAGGTAGAGGAA
CAGCTGGCTGGCGATGGTCAATACAAACTGACCACGGCCGATGGCCAAAG
CCACGATCTCGGAAAGGACACCATCAGCGTTAAGCACTCTACGAAAACGG
TCCATGTGGAGGAGTTCATCCCGAGTGTGGTTGAGCCTTCATTCGGCATT
GGTCGCATCATGTACTCCCTGTTGGAGCACAGTTTCCAATGCCGCGACGG
CGACGAGCAGCGGTGCTACTTTACGCTACCGCCTCTGGTGGCGCCCATCA
AGTGCTCCATCCTTCCGCTGTCCAACAACACCGACTTTCAACCTTATACT
CAGAAACTGTCTTCTGCCCTGACCAAGGCGGAACTTTCGCACAAGGTGGA
CGACTCCAGTGGATCCATTGGCAGGCGGTATGCCCGCACGGATGAGATTG
CCATACCCTATGGCATCACCGTGGACTTCGACACTCTAAAGGAACCGCAT
ACGGTGACTCTGCGAGATCGGAATACTATGAAACAGGTGCGCGTCGGTCT
GGAGGAGGTTGTGGGCGTCGTCAAGGACTTGTCGACGGCGAGAACCACCT
GGGAGAGTGTCACCGAACAGTATCCTCTGTTCGAACAGCAGGAGGCCAGC
AAGTAAAAGCTTTCTAGACCAT
BS07048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-RC | 2298 | CG6778-PC | 258..2298 | 16..2056 | 10205 | 100 | Plus |
| Aats-gly-RB | 2298 | CG6778-PB | 258..2298 | 16..2056 | 10205 | 100 | Plus |
| Aats-gly-RA | 2040 | CG6778-PA | 1..2040 | 17..2056 | 10200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-RC | 2476 | CG6778-RC | 309..2349 | 16..2056 | 10205 | 100 | Plus |
| Aats-gly-RB | 2545 | CG6778-RB | 378..2418 | 16..2056 | 10205 | 100 | Plus |
| Aats-gly-RA | 2457 | CG6778-RA | 290..2330 | 16..2056 | 10205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15095519..15097559 | 16..2056 | 10205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:26:52 has no hits.
BS07048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:37 Download gff for
BS07048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RB | 254..2298 | 12..2056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:50 Download gff for
BS07048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RB | 339..2376 | 17..2054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:21 Download gff for
BS07048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 291..2328 | 17..2054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:37 Download gff for
BS07048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RB | 334..2384 | 12..2062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:45 Download gff for
BS07048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 291..2328 | 17..2054 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:45 Download gff for
BS07048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15095520..15097557 | 17..2054 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:21 Download gff for
BS07048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15088620..15090657 | 17..2054 | 100 | | Plus |
BS07048.pep Sequence
Translation from 16 to 2055
> BS07048.pep
MSNPEIEAQLAPLRERVQEQGNLVRDLKAKGAPEIDVKKAVAELKARKKL
LEDKELALTPSVVSFDRAKMEDLLKRRFFYDQSFAIYGGITGQYDFGPMG
CALKSNILALWRQYFALEEQMLEVDCSILTPEPVLKASGHVERFADLMVK
DVKTGECFRLDHLIKQALEKLSKAKDATPALQAECEDIIIKLDGLNKQEL
AGVLAKYNIKSPLTGNDLTEPIEFNLMFATQIGPTGLVKGFLRPETAQGI
FVNFKRLLEFNQGKLPFAVAQIGNSFRNEISPRSGLIRVREFTMAEIEHF
CDPVLKDHPKFGNIKSEKLTLYSACNQMDGKSAAQVQIGEAVASKLVANE
TLGYYMARIQQFLLAIGIKPECLRFRQHMSNEMAHYACDCWDAEILTSYG
WVECVGCADRSAYDLGQHTAATGVRLVAEKRLPAPKTVEVSEIVPNKQAL
GKTFKKEAKNITDALAKLSLEEITKVEEQLAGDGQYKLTTADGQSHDLGK
DTISVKHSTKTVHVEEFIPSVVEPSFGIGRIMYSLLEHSFQCRDGDEQRC
YFTLPPLVAPIKCSILPLSNNTDFQPYTQKLSSALTKAELSHKVDDSSGS
IGRRYARTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVRVGLEEVVG
VVKDLSTARTTWESVTEQYPLFEQQEASK*
BS07048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-PC | 765 | CG6778-PC | 87..765 | 1..679 | 3490 | 100 | Plus |
| Aats-gly-PB | 765 | CG6778-PB | 87..765 | 1..679 | 3490 | 100 | Plus |
| Aats-gly-PA | 679 | CG6778-PA | 1..679 | 1..679 | 3490 | 100 | Plus |
