Clone Sequence Records
BS07049.5prime Sequence
910 bp (795 high quality bases) assembled on 2006-01-06
> BS07049.5prime
GAAGTTATCAGTCGACATGATGAACGGGCGCAGCATCGGCATGCTGAAAA
AGCTCAGGCACACCTGGCGCACGTTTCCACGCCTTATGGCCACCAAGGTG
ACCAGTCTGGGTGGCGACGAGGTGGGCAGTGGCACAGGAATCGGACAGAT
CACCGGCGGCGTGCGTACAAGTGATGGGCCACAGAAAGTGAACACGCCTT
CCAAGGAGATTGTCACCCACCTGCCACCTCTCACCGAGCCACTGCCCAAC
CTGCCGGAGGCCGTTTACGCAGCTCCACTGGCGGAAAGCGCCATTACGAA
GGTAACGACGCTGCCGAACGGTCTGCGGATTGCCTCGGAACCGCGGTACG
GACAGTTCTGCACTGTGGGCCTGGTTATCGACTCCGGGCCGCGCTACGAA
GTCGCTTACCCCAGCGGCGTGTCGCACTTTCTCGAAAAGCTAGCTTTTAA
TTCCACAGTCAACTTTCCCAACAAGGACGCCATACTTAAGGAGCTGGAGA
AGAACGGAGGCATTTGCGACTGTCAGAGCTCGCGGGACACGCTCATTTAT
GCCGCCAGCATCGACAGCCGGGCTATTGATTCCGTGACGCGTCTGCTGGC
GGACGTCACTTTGCGGCCCACACTTAGCGACCAGGAGGTGAGTCTGGCCA
GGCGGGCCGTCAACTTTGAGCTGGAGACACTGGGCATGCGGCCTGAGCAG
GAGCCAATACTGATGGACATGATCCACGCGGCAGCATTCAGGGACAATAC
CTTGGGCCTGCCCAAGCTATGTCCCCTTGAGAACCTGGACCACATAAACC
GCAATGTGCTAATGAACTACCTTAAGTACCATCACTCTCCCAAGCGCATG
GTCATCGCTGGTGTAGGCGTGGATCATGATGAGCTGGTTAGCCATGTGCA
AAGATACTTT
BS07049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-PA | 1671 | CG8728-RA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-RA | 1935 | CG8728-RA | 158..1053 | 15..910 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7937957..7938375 | 870..452 | 2095 | 100 | Minus |
2R | 25286936 | 2R | 7938437..7938819 | 451..69 | 1900 | 99.7 | Minus |
2R | 25286936 | 2R | 7938898..7938957 | 74..15 | 300 | 100 | Minus |
2R | 25286936 | 2R | 7937861..7937902 | 910..869 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:06:44 has no hits.
BS07049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:26 Download gff for
BS07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:08 Download gff for
BS07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:47:22 Download gff for
BS07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 154..1053 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:12 Download gff for
BS07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 154..1053 | 9..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:12 Download gff for
BS07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7937861..7937902 | 869..910 | 100 | <- | Minus |
2R | 7937959..7938375 | 452..868 | 100 | <- | Minus |
2R | 7938437..7938815 | 73..451 | 100 | <- | Minus |
2R | 7938900..7938961 | 9..72 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:47:22 Download gff for
BS07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3825366..3825407 | 869..910 | 100 | <- | Minus |
arm_2R | 3825464..3825880 | 452..868 | 100 | <- | Minus |
arm_2R | 3825942..3826320 | 73..451 | 100 | <- | Minus |
arm_2R | 3826405..3826466 | 9..72 | 95 | | Minus |
BS07049.3prime Sequence
859 bp (833 high quality bases) assembled on 2006-01-06
> BS07049.3prime
ATGGTCTAGAAAGCTTCTATTTGAACAAGGAAAGCCTACGTCCCAGCCCG
GTACGTCCTGAACCACTGACCGCGTTGGTGATGTGGCTCATCTCGGGAAG
ATTGTGGATGTCGCCGCGGGCGGCCACAGAAGGCGGCGAGCTCAGGAGAC
GTTGAGCAACGCGTTGGATATCGGCGGCAGTTACACTTTCAATTTCCTTG
ATAAAATGCTGCGGTCGTTTTCGCTGCCCCGTCACCAGCACTTGGCGGCC
CACGTCCTCGAACACAACGGGTCTCGACTCCAGGTTCATTAGTAACATGG
ACTGAAGCTGGATCTTCGAGCGCATTAGCTCTTCACGGCCTGGCTCTGCG
GCCATGCCCATCATCTCGCGGGTCAGGACCTCGACCATGTCGTTCATGTG
CTGTGGCGGTGCGCTACCGTGAACACAGAAGAGACCACAATCGCCGTAAG
CATGATTGTAGGCCGTGGCGCTGTACATCCAGTGGTAGCGGTTTAGCACC
TTGGTATACAGGCGCGAGTACATGCCCTTGCCAGGACCGCCTGCGGAGAA
GGATCCACCACCGCCCATCATGATATTCAGGACGCACAGGGGAACGAAGT
CCTTGTCCTGGTGGGAACAGCCTTCAAATCCGAGAATTACATGGGCCAGC
TCTGGTAGCCCAGCGGCCGCATAGATTGGGATTTCGCATTGTTCCTTTAC
TAATCCGCCAGTGTATTGTGCAATAGACGTATCTACTTGCTTAGGTCCCG
AGTCCTCCAGGGCTTCCGTTTCCCAGATGGCTTTGTCCTCCACAAAGTAT
CTTTGCACATGGCTAACCAGCTCATCATGATCCACGCCTACACCAGCGAT
GACCATGCG
BS07049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-PA | 1671 | CG8728-RA | 829..1671 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-RA | 1935 | CG8728-RA | 988..1830 | 859..17 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7937204..7937710 | 190..696 | 2535 | 100 | Plus |
2R | 25286936 | 2R | 7936971..7937144 | 17..190 | 870 | 100 | Plus |
2R | 25286936 | 2R | 7937761..7937902 | 694..835 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:04:16 has no hits.
BS07049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:25 Download gff for
BS07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-PA | 829..1671 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:07 Download gff for
BS07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-PA | 829..1671 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:08 Download gff for
BS07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 988..1834 | 12..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:05 Download gff for
BS07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 988..1834 | 12..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:05 Download gff for
BS07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7936967..7937143 | 12..189 | 98 | <- | Plus |
2R | 7937204..7937708 | 190..694 | 100 | <- | Plus |
2R | 7937762..7937902 | 695..835 | 100 | <- | Plus |
2R | 7937959..7937982 | 836..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:08 Download gff for
BS07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3824472..3824648 | 12..189 | 98 | <- | Plus |
arm_2R | 3824709..3825213 | 190..694 | 100 | <- | Plus |
arm_2R | 3825267..3825407 | 695..835 | 100 | <- | Plus |
arm_2R | 3825464..3825487 | 836..859 | 100 | | Plus |
BS07049.complete Sequence
1703 bp (1703 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635705
> BS07049.complete
GAAGTTATCAGTCGACATGATGAACGGGCGCAGCATCGGCATGCTGAAAA
AGCTCAGGCACACCTGGCGCACGTTTCCACGCCTTATGGCCACCAAGGTG
ACCAGTCTGGGTGGCGACGAGGTGGGCAGTGGCACAGGAATCGGACAGAT
CACCGGCGGCGTGCGTACAAGTGATGGGCCACAGAAAGTGAACACGCCTT
CCAAGGAGATTGTCACCCACCTGCCACCTCTCACCGAGCCACTGCCCAAC
CTGCCGGAGGCCGTTTACGCAGCTCCACTGGCGGAAAGCGCCATTACGAA
GGTAACGACGCTGCCGAACGGTCTGCGGATTGCCTCGGAACCGCGGTACG
GACAGTTCTGCACTGTGGGCCTGGTTATCGACTCCGGGCCGCGCTACGAA
GTCGCTTACCCCAGCGGCGTGTCGCACTTTCTCGAAAAGCTAGCTTTTAA
TTCCACAGTCAACTTTCCCAACAAGGACGCCATACTTAAGGAGCTGGAGA
AGAACGGAGGCATTTGCGACTGTCAGAGCTCGCGGGACACGCTCATTTAT
GCCGCCAGCATCGACAGCCGGGCTATTGATTCCGTGACGCGTCTGCTGGC
GGACGTCACTTTGCGGCCCACACTTAGCGACCAGGAGGTGAGTCTGGCCA
GGCGGGCCGTCAACTTTGAGCTGGAGACACTGGGCATGCGGCCTGAGCAG
GAGCCAATACTGATGGACATGATCCACGCGGCAGCATTCAGGGACAATAC
CTTGGGCCTGCCCAAGCTATGTCCCCTTGAGAACCTGGACCACATAAACC
GCAATGTGCTAATGAACTACCTTAAGTACCATCACTCTCCCAAGCGCATG
GTCATCGCTGGTGTAGGCGTGGATCATGATGAGCTGGTTAGCCATGTGCA
AAGATACTTTGTGGAGGACAAAGCCATCTGGGAAACGGAAGCCCTGGAGG
ACTCGGGACCTAAGCAAGTAGATACGTCTATTGCACAATACACTGGCGGA
TTAGTAAAGGAACAATGCGAAATCCCAATCTATGCGGCCGCTGGGCTACC
AGAGCTGGCCCATGTAATTCTCGGATTTGAAGGCTGTTCCCACCAGGACA
AGGACTTCGTTCCCCTGTGCGTCCTGAATATCATGATGGGCGGTGGTGGA
TCCTTCTCCGCAGGCGGTCCTGGCAAGGGCATGTACTCGCGCCTGTATAC
CAAGGTGCTAAACCGCTACCACTGGATGTACAGCGCCACGGCCTACAATC
ATGCTTACGGCGATTGTGGTCTCTTCTGTGTTCACGGTAGCGCACCGCCA
CAGCACATGAACGACATGGTCGAGGTCCTGACCCGCGAGATGATGGGCAT
GGCCGCAGAGCCAGGCCGTGAAGAGCTAATGCGCTCGAAGATCCAGCTTC
AGTCCATGTTACTAATGAACCTGGAGTCGAGACCCGTTGTGTTCGAGGAC
GTGGGCCGCCAAGTGCTGGTGACGGGGCAGCGAAAACGACCGCAGCATTT
TATCAAGGAAATTGAAAGTGTAACTGCCGCCGATATCCAACGCGTTGCTC
AACGTCTCCTGAGCTCGCCGCCTTCTGTGGCCGCCCGCGGCGACATCCAC
AATCTTCCCGAGATGAGCCACATCACCAACGCGGTCAGTGGTTCAGGACG
TACCGGGCTGGGACGTAGGCTTTCCTTGTTCAAATAGAAGCTTTCTAGAC
CAT
BS07049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-RA | 1671 | CG8728-PA | 1..1671 | 17..1687 | 8355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-RA | 1935 | CG8728-RA | 158..1830 | 15..1687 | 8365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7937204..7937710 | 1514..1008 | 2535 | 100 | Minus |
2R | 25286936 | 2R | 7937957..7938375 | 870..452 | 2095 | 100 | Minus |
2R | 25286936 | 2R | 7938437..7938819 | 451..69 | 1900 | 99.7 | Minus |
2R | 25286936 | 2R | 7936971..7937144 | 1687..1514 | 870 | 100 | Minus |
2R | 25286936 | 2R | 7937761..7937902 | 1010..869 | 710 | 100 | Minus |
2R | 25286936 | 2R | 7938898..7938957 | 74..15 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:48:00 has no hits.
BS07049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:08 Download gff for
BS07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 1..1671 | 17..1687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:22 Download gff for
BS07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 209..1889 | 9..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:36 Download gff for
BS07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 160..1824 | 17..1681 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:08 Download gff for
BS07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 209..1889 | 9..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:42 Download gff for
BS07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 160..1824 | 17..1681 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:42 Download gff for
BS07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7936977..7937143 | 1515..1681 | 100 | <- | Minus |
2R | 7937204..7937708 | 1010..1514 | 100 | <- | Minus |
2R | 7937762..7937902 | 869..1009 | 100 | <- | Minus |
2R | 7937959..7938375 | 452..868 | 100 | <- | Minus |
2R | 7938437..7938815 | 73..451 | 100 | <- | Minus |
2R | 7938900..7938955 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:36 Download gff for
BS07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3824482..3824648 | 1515..1681 | 100 | <- | Minus |
arm_2R | 3824709..3825213 | 1010..1514 | 100 | <- | Minus |
arm_2R | 3825267..3825407 | 869..1009 | 100 | <- | Minus |
arm_2R | 3825464..3825880 | 452..868 | 100 | <- | Minus |
arm_2R | 3825942..3826320 | 73..451 | 100 | <- | Minus |
arm_2R | 3826405..3826460 | 17..72 | 100 | | Minus |
BS07049.pep Sequence
Translation from 16 to 1686
> BS07049.pep
MMNGRSIGMLKKLRHTWRTFPRLMATKVTSLGGDEVGSGTGIGQITGGVR
TSDGPQKVNTPSKEIVTHLPPLTEPLPNLPEAVYAAPLAESAITKVTTLP
NGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSGVSHFLEKLAFNSTVNF
PNKDAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVTLR
PTLSDQEVSLARRAVNFELETLGMRPEQEPILMDMIHAAAFRDNTLGLPK
LCPLENLDHINRNVLMNYLKYHHSPKRMVIAGVGVDHDELVSHVQRYFVE
DKAIWETEALEDSGPKQVDTSIAQYTGGLVKEQCEIPIYAAAGLPELAHV
ILGFEGCSHQDKDFVPLCVLNIMMGGGGSFSAGGPGKGMYSRLYTKVLNR
YHWMYSATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPG
REELMRSKIQLQSMLLMNLESRPVVFEDVGRQVLVTGQRKRPQHFIKEIE
SVTAADIQRVAQRLLSSPPSVAARGDIHNLPEMSHITNAVSGSGRTGLGR
RLSLFK*
BS07049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-PA | 556 | CG8728-PA | 1..556 | 1..556 | 2891 | 100 | Plus |
CG3731-PB | 470 | CG3731-PB | 41..465 | 94..540 | 454 | 28.5 | Plus |
CG3731-PA | 470 | CG3731-PA | 41..465 | 94..540 | 454 | 28.5 | Plus |