Clone BS07049 Report

Search the DGRC for BS07049

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG8728-RA
Protein status:BS07049.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07049.5prime Sequence

910 bp (795 high quality bases) assembled on 2006-01-06

> BS07049.5prime
GAAGTTATCAGTCGACATGATGAACGGGCGCAGCATCGGCATGCTGAAAA
AGCTCAGGCACACCTGGCGCACGTTTCCACGCCTTATGGCCACCAAGGTG
ACCAGTCTGGGTGGCGACGAGGTGGGCAGTGGCACAGGAATCGGACAGAT
CACCGGCGGCGTGCGTACAAGTGATGGGCCACAGAAAGTGAACACGCCTT
CCAAGGAGATTGTCACCCACCTGCCACCTCTCACCGAGCCACTGCCCAAC
CTGCCGGAGGCCGTTTACGCAGCTCCACTGGCGGAAAGCGCCATTACGAA
GGTAACGACGCTGCCGAACGGTCTGCGGATTGCCTCGGAACCGCGGTACG
GACAGTTCTGCACTGTGGGCCTGGTTATCGACTCCGGGCCGCGCTACGAA
GTCGCTTACCCCAGCGGCGTGTCGCACTTTCTCGAAAAGCTAGCTTTTAA
TTCCACAGTCAACTTTCCCAACAAGGACGCCATACTTAAGGAGCTGGAGA
AGAACGGAGGCATTTGCGACTGTCAGAGCTCGCGGGACACGCTCATTTAT
GCCGCCAGCATCGACAGCCGGGCTATTGATTCCGTGACGCGTCTGCTGGC
GGACGTCACTTTGCGGCCCACACTTAGCGACCAGGAGGTGAGTCTGGCCA
GGCGGGCCGTCAACTTTGAGCTGGAGACACTGGGCATGCGGCCTGAGCAG
GAGCCAATACTGATGGACATGATCCACGCGGCAGCATTCAGGGACAATAC
CTTGGGCCTGCCCAAGCTATGTCCCCTTGAGAACCTGGACCACATAAACC
GCAATGTGCTAATGAACTACCTTAAGTACCATCACTCTCCCAAGCGCATG
GTCATCGCTGGTGTAGGCGTGGATCATGATGAGCTGGTTAGCCATGTGCA
AAGATACTTT

BS07049.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-PA 1671 CG8728-RA 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-RA 1935 CG8728-RA 158..1053 15..910 4480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7937957..7938375 870..452 2095 100 Minus
2R 25286936 2R 7938437..7938819 451..69 1900 99.7 Minus
2R 25286936 2R 7938898..7938957 74..15 300 100 Minus
2R 25286936 2R 7937861..7937902 910..869 210 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:06:44 has no hits.

BS07049.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:26 Download gff for BS07049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-PA 1..894 17..910 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:08 Download gff for BS07049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-PA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:47:22 Download gff for BS07049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 154..1053 9..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:12 Download gff for BS07049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 154..1053 9..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:12 Download gff for BS07049.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7937861..7937902 869..910 100 <- Minus
2R 7937959..7938375 452..868 100 <- Minus
2R 7938437..7938815 73..451 100 <- Minus
2R 7938900..7938961 9..72 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:47:22 Download gff for BS07049.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3825366..3825407 869..910 100 <- Minus
arm_2R 3825464..3825880 452..868 100 <- Minus
arm_2R 3825942..3826320 73..451 100 <- Minus
arm_2R 3826405..3826466 9..72 95   Minus

BS07049.3prime Sequence

859 bp (833 high quality bases) assembled on 2006-01-06

> BS07049.3prime
ATGGTCTAGAAAGCTTCTATTTGAACAAGGAAAGCCTACGTCCCAGCCCG
GTACGTCCTGAACCACTGACCGCGTTGGTGATGTGGCTCATCTCGGGAAG
ATTGTGGATGTCGCCGCGGGCGGCCACAGAAGGCGGCGAGCTCAGGAGAC
GTTGAGCAACGCGTTGGATATCGGCGGCAGTTACACTTTCAATTTCCTTG
ATAAAATGCTGCGGTCGTTTTCGCTGCCCCGTCACCAGCACTTGGCGGCC
CACGTCCTCGAACACAACGGGTCTCGACTCCAGGTTCATTAGTAACATGG
ACTGAAGCTGGATCTTCGAGCGCATTAGCTCTTCACGGCCTGGCTCTGCG
GCCATGCCCATCATCTCGCGGGTCAGGACCTCGACCATGTCGTTCATGTG
CTGTGGCGGTGCGCTACCGTGAACACAGAAGAGACCACAATCGCCGTAAG
CATGATTGTAGGCCGTGGCGCTGTACATCCAGTGGTAGCGGTTTAGCACC
TTGGTATACAGGCGCGAGTACATGCCCTTGCCAGGACCGCCTGCGGAGAA
GGATCCACCACCGCCCATCATGATATTCAGGACGCACAGGGGAACGAAGT
CCTTGTCCTGGTGGGAACAGCCTTCAAATCCGAGAATTACATGGGCCAGC
TCTGGTAGCCCAGCGGCCGCATAGATTGGGATTTCGCATTGTTCCTTTAC
TAATCCGCCAGTGTATTGTGCAATAGACGTATCTACTTGCTTAGGTCCCG
AGTCCTCCAGGGCTTCCGTTTCCCAGATGGCTTTGTCCTCCACAAAGTAT
CTTTGCACATGGCTAACCAGCTCATCATGATCCACGCCTACACCAGCGAT
GACCATGCG

BS07049.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-PA 1671 CG8728-RA 829..1671 859..17 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-RA 1935 CG8728-RA 988..1830 859..17 4215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7937204..7937710 190..696 2535 100 Plus
2R 25286936 2R 7936971..7937144 17..190 870 100 Plus
2R 25286936 2R 7937761..7937902 694..835 710 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:04:16 has no hits.

BS07049.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:25 Download gff for BS07049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-PA 829..1671 17..859 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:07 Download gff for BS07049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-PA 829..1671 17..859 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:08 Download gff for BS07049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 988..1834 12..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:05 Download gff for BS07049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 988..1834 12..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:05 Download gff for BS07049.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7936967..7937143 12..189 98 <- Plus
2R 7937204..7937708 190..694 100 <- Plus
2R 7937762..7937902 695..835 100 <- Plus
2R 7937959..7937982 836..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:08 Download gff for BS07049.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3824472..3824648 12..189 98 <- Plus
arm_2R 3824709..3825213 190..694 100 <- Plus
arm_2R 3825267..3825407 695..835 100 <- Plus
arm_2R 3825464..3825487 836..859 100   Plus

BS07049.complete Sequence

1703 bp (1703 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635705

> BS07049.complete
GAAGTTATCAGTCGACATGATGAACGGGCGCAGCATCGGCATGCTGAAAA
AGCTCAGGCACACCTGGCGCACGTTTCCACGCCTTATGGCCACCAAGGTG
ACCAGTCTGGGTGGCGACGAGGTGGGCAGTGGCACAGGAATCGGACAGAT
CACCGGCGGCGTGCGTACAAGTGATGGGCCACAGAAAGTGAACACGCCTT
CCAAGGAGATTGTCACCCACCTGCCACCTCTCACCGAGCCACTGCCCAAC
CTGCCGGAGGCCGTTTACGCAGCTCCACTGGCGGAAAGCGCCATTACGAA
GGTAACGACGCTGCCGAACGGTCTGCGGATTGCCTCGGAACCGCGGTACG
GACAGTTCTGCACTGTGGGCCTGGTTATCGACTCCGGGCCGCGCTACGAA
GTCGCTTACCCCAGCGGCGTGTCGCACTTTCTCGAAAAGCTAGCTTTTAA
TTCCACAGTCAACTTTCCCAACAAGGACGCCATACTTAAGGAGCTGGAGA
AGAACGGAGGCATTTGCGACTGTCAGAGCTCGCGGGACACGCTCATTTAT
GCCGCCAGCATCGACAGCCGGGCTATTGATTCCGTGACGCGTCTGCTGGC
GGACGTCACTTTGCGGCCCACACTTAGCGACCAGGAGGTGAGTCTGGCCA
GGCGGGCCGTCAACTTTGAGCTGGAGACACTGGGCATGCGGCCTGAGCAG
GAGCCAATACTGATGGACATGATCCACGCGGCAGCATTCAGGGACAATAC
CTTGGGCCTGCCCAAGCTATGTCCCCTTGAGAACCTGGACCACATAAACC
GCAATGTGCTAATGAACTACCTTAAGTACCATCACTCTCCCAAGCGCATG
GTCATCGCTGGTGTAGGCGTGGATCATGATGAGCTGGTTAGCCATGTGCA
AAGATACTTTGTGGAGGACAAAGCCATCTGGGAAACGGAAGCCCTGGAGG
ACTCGGGACCTAAGCAAGTAGATACGTCTATTGCACAATACACTGGCGGA
TTAGTAAAGGAACAATGCGAAATCCCAATCTATGCGGCCGCTGGGCTACC
AGAGCTGGCCCATGTAATTCTCGGATTTGAAGGCTGTTCCCACCAGGACA
AGGACTTCGTTCCCCTGTGCGTCCTGAATATCATGATGGGCGGTGGTGGA
TCCTTCTCCGCAGGCGGTCCTGGCAAGGGCATGTACTCGCGCCTGTATAC
CAAGGTGCTAAACCGCTACCACTGGATGTACAGCGCCACGGCCTACAATC
ATGCTTACGGCGATTGTGGTCTCTTCTGTGTTCACGGTAGCGCACCGCCA
CAGCACATGAACGACATGGTCGAGGTCCTGACCCGCGAGATGATGGGCAT
GGCCGCAGAGCCAGGCCGTGAAGAGCTAATGCGCTCGAAGATCCAGCTTC
AGTCCATGTTACTAATGAACCTGGAGTCGAGACCCGTTGTGTTCGAGGAC
GTGGGCCGCCAAGTGCTGGTGACGGGGCAGCGAAAACGACCGCAGCATTT
TATCAAGGAAATTGAAAGTGTAACTGCCGCCGATATCCAACGCGTTGCTC
AACGTCTCCTGAGCTCGCCGCCTTCTGTGGCCGCCCGCGGCGACATCCAC
AATCTTCCCGAGATGAGCCACATCACCAACGCGGTCAGTGGTTCAGGACG
TACCGGGCTGGGACGTAGGCTTTCCTTGTTCAAATAGAAGCTTTCTAGAC
CAT

BS07049.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-RA 1671 CG8728-PA 1..1671 17..1687 8355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-RA 1935 CG8728-RA 158..1830 15..1687 8365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7937204..7937710 1514..1008 2535 100 Minus
2R 25286936 2R 7937957..7938375 870..452 2095 100 Minus
2R 25286936 2R 7938437..7938819 451..69 1900 99.7 Minus
2R 25286936 2R 7936971..7937144 1687..1514 870 100 Minus
2R 25286936 2R 7937761..7937902 1010..869 710 100 Minus
2R 25286936 2R 7938898..7938957 74..15 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:48:00 has no hits.

BS07049.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:08 Download gff for BS07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 1..1671 17..1687 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:22 Download gff for BS07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 209..1889 9..1692 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:36 Download gff for BS07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 160..1824 17..1681 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:08 Download gff for BS07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 209..1889 9..1692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:42 Download gff for BS07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 160..1824 17..1681 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:42 Download gff for BS07049.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7936977..7937143 1515..1681 100 <- Minus
2R 7937204..7937708 1010..1514 100 <- Minus
2R 7937762..7937902 869..1009 100 <- Minus
2R 7937959..7938375 452..868 100 <- Minus
2R 7938437..7938815 73..451 100 <- Minus
2R 7938900..7938955 17..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:36 Download gff for BS07049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3824482..3824648 1515..1681 100 <- Minus
arm_2R 3824709..3825213 1010..1514 100 <- Minus
arm_2R 3825267..3825407 869..1009 100 <- Minus
arm_2R 3825464..3825880 452..868 100 <- Minus
arm_2R 3825942..3826320 73..451 100 <- Minus
arm_2R 3826405..3826460 17..72 100   Minus

BS07049.pep Sequence

Translation from 16 to 1686

> BS07049.pep
MMNGRSIGMLKKLRHTWRTFPRLMATKVTSLGGDEVGSGTGIGQITGGVR
TSDGPQKVNTPSKEIVTHLPPLTEPLPNLPEAVYAAPLAESAITKVTTLP
NGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSGVSHFLEKLAFNSTVNF
PNKDAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVTLR
PTLSDQEVSLARRAVNFELETLGMRPEQEPILMDMIHAAAFRDNTLGLPK
LCPLENLDHINRNVLMNYLKYHHSPKRMVIAGVGVDHDELVSHVQRYFVE
DKAIWETEALEDSGPKQVDTSIAQYTGGLVKEQCEIPIYAAAGLPELAHV
ILGFEGCSHQDKDFVPLCVLNIMMGGGGSFSAGGPGKGMYSRLYTKVLNR
YHWMYSATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPG
REELMRSKIQLQSMLLMNLESRPVVFEDVGRQVLVTGQRKRPQHFIKEIE
SVTAADIQRVAQRLLSSPPSVAARGDIHNLPEMSHITNAVSGSGRTGLGR
RLSLFK*

BS07049.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-PA 556 CG8728-PA 1..556 1..556 2891 100 Plus
CG3731-PB 470 CG3731-PB 41..465 94..540 454 28.5 Plus
CG3731-PA 470 CG3731-PA 41..465 94..540 454 28.5 Plus