Clone Sequence Records
BS07051.3prime Sequence
873 bp (784 high quality bases) assembled on 2006-01-06
> BS07051.3prime
ATGGTCTAGAAAGCTTTCATGACCGCTTCACCTTGCCATTGGACGCATTC
ACCGAGGTCTGGGAGCGGTAGGAGGCTGCGCCTCCGCCGACAGCCATTTC
GGTCGCATGAGTGGCAACATGGTGGATGCCCTTCTCCATGCAGCCGTGAT
AGATGGGTCGCATGAATTTCTCCCACAATAGCGTTGCAAAGTCATCCAAC
TTGCCGCCAAAGTCGCTGAGCTCTCCGCTATATCTAATGTAGGCCCACAG
AGCCAGCGTTAGAAGCGCCACACCCATAACCAGGTTGCAGAAGTTGGCGA
ACGTATAGAGACCCACCAATCCAAAGATGCCGCTAAGGATGTACATGATG
ACGGCGCAGGCGAAGTACACCGCCGGTGTCCGTGCTGCCTTAAAGATGTT
CTTGCTCTCGTTGTGTGCTTGGTAGTTGGTGAAGACCTCCTCAAGATCAT
CTTCCAGTTGCTTGCGGAATTTCTCGGTGAACTCCTCACCACCCATCTTG
CGCTTGGCGGCGAACTGGAACAGTGCCTTGTCCTTCACCCGCAGGTGCTC
CGTCTGGAGATGGGCGGTGCTTAAGTACGGCCGCGTTCCACCGCACACCT
CCTCCATGAGCTGTCCGTACAGCTCCTTGGCGGCGGCCACGGCAGTCAAA
TGGTTAGCCTCTGCGGTGGCCACCAGCATGCTCTTCGGCTCGGGCAGCTC
GTTGCCCTTGTAGATGTTCATGTACGATTGGAAGTACTGGATGAGATCGC
GGGCCCGCACCCGCTGTCCGCTGATCTCCTTGTAGACAAGGTTGTCCGGT
GCCAGCAGCATGGGCACCAGGGAGCGCAGGCTACTCTTAAACTCGGGCGT
GATGTCCTGCAGCCGACCGTCAA
BS07051.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6668-PA | 1626 | atl-RA | 770..1626 | 873..17 | 4285 | 100 | Minus |
CG6668-PB | 1626 | atl-RB | 770..1626 | 873..17 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
atl-RC | 2907 | CG6668-RC | 1044..1900 | 873..17 | 4285 | 100 | Minus |
atl-RB | 3207 | CG6668-RB | 1344..2200 | 873..17 | 4285 | 100 | Minus |
atl-RA | 2889 | CG6668-RA | 1026..1882 | 873..17 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24632731..24633370 | 873..234 | 3200 | 100 | Minus |
3R | 32079331 | 3R | 24633558..24633707 | 166..17 | 750 | 100 | Minus |
3R | 32079331 | 3R | 24633431..24633499 | 235..167 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:05:20 has no hits.
BS07051.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:30 Download gff for
BS07051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-PA | 772..1626 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:13 Download gff for
BS07051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6668-PB | 772..1626 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:02:40 Download gff for
BS07051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-RA | 1028..1882 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:31 Download gff for
BS07051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-RA | 1028..1882 | 17..871 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:31 Download gff for
BS07051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24633558..24633707 | 17..166 | 100 | | Minus |
3R | 24632733..24633370 | 234..871 | 100 | -> | Minus |
3R | 24633433..24633499 | 167..233 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:02:40 Download gff for
BS07051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20458455..20459092 | 234..871 | 100 | -> | Minus |
arm_3R | 20459155..20459221 | 167..233 | 100 | -> | Minus |
arm_3R | 20459280..20459429 | 17..166 | 100 | | Minus |
BS07051.5prime Sequence
862 bp (767 high quality bases) assembled on 2006-01-06
> BS07051.5prime
GAAGTTATCAGTCGACATGGGCGGATCGGCAGTGCAGGTGATCAACGCCT
CCGAGGAGCACACATTTGTGCTCAACGAGGATGCGCTGAGTGAGGTCCTA
ATGCGGGATGAGGTCAAGGATCGGTTCGTCTGCGTTGTCTCCGTGGCTGG
AGCCTTCCGAAAGGGCAAGAGCTTCCTGCTGGACTTTTTTCTGCGCTATA
TGTATTCAAAGTATGTGCATCACGATGCGACAGACTGGCTGGGAGGCGAA
TCAGATCCGCTGGAGGGTTTCTCCTGGCGCGGCGGATCTGAGCGCGACAC
CACCGGCATTCTCATGTGGTCCGACATATTCCTGCACGACTATCCCAACG
GCGACAAGATAGCCATCATTCTGCTGGACACACAGGGCGCCTTCGACAGC
CAGAGCACGGTGCGCGATTGTGCCACCGTTTTTGCGTTGAGCACAATGCT
GTCCTCGGTGCAGATATACAACCTGTCACAGAACATCCAGGAGGACGACC
TGCAGCACCTGCAGCTCTTCACTGAGTATGGTCGCCTCGCGCTGGCCGAC
ACCGGCAAAAAGCCGTTCCAGCGTCTGCAGTTCCTCGTCCGGGACTGGAG
CTTTCCCTACGAGGCGGAATATGGTGCACTGGGCGGGGATAAGATTCTGA
AACGACGTCTGGAGGTGTCCGACAAACAGCACCCAGAACTACAGTCCCTG
CGTCGCCACATTTCGTCCTGTTTCACGGAGGTGGCCTGCTTCCTGATGCC
CCATCCAGGTCTCAATGTGGCCACCAATCCTAAATTTGACGGTCGGCTGC
AGGACATCACGCCCGAGTTTAAGAGTAGCCTGCGCTCCCTGGTGCCCATG
CTGCTGGCACCG
BS07051.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6668-PA | 1626 | atl-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
CG6668-PB | 1626 | atl-RB | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
atl-RC | 2907 | CG6668-RC | 275..1120 | 17..862 | 4230 | 100 | Plus |
atl-RB | 3207 | CG6668-RB | 575..1420 | 17..862 | 4230 | 100 | Plus |
atl-RA | 2889 | CG6668-RA | 257..1102 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24632155..24632807 | 210..862 | 3265 | 100 | Plus |
3R | 32079331 | 3R | 24631897..24632091 | 17..211 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:37:20 has no hits.
BS07051.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:31 Download gff for
BS07051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:15 Download gff for
BS07051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6668-PB | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:02:09 Download gff for
BS07051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-RA | 253..1102 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:52 Download gff for
BS07051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-RA | 253..1102 | 9..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:52 Download gff for
BS07051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24631893..24632091 | 16..211 | 98 | -> | Plus |
3R | 24632157..24632807 | 212..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:02:09 Download gff for
BS07051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20457615..20457813 | 16..211 | 98 | -> | Plus |
arm_3R | 20457879..20458529 | 212..862 | 100 | | Plus |
BS07051.complete Sequence
1658 bp (1658 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635706
> BS07051.complete
GAAGTTATCAGTCGACATGGGCGGATCGGCAGTGCAGGTGATCAACGCCT
CCGAGGAGCACACATTTGTGCTCAACGAGGATGCGCTGAGTGAGGTCCTA
ATGCGGGATGAGGTCAAGGATCGGTTCGTCTGCGTTGTCTCCGTGGCTGG
AGCCTTCCGAAAGGGCAAGAGCTTCCTGCTGGACTTTTTTCTGCGCTATA
TGTATTCAAAGTATGTGCATCACGATGCGACAGACTGGCTGGGAGGCGAA
TCAGATCCGCTGGAGGGTTTCTCCTGGCGCGGCGGATCTGAGCGCGACAC
CACCGGCATTCTCATGTGGTCCGACATATTCCTGCACGACTATCCCAACG
GCGACAAGATAGCCATCATTCTGCTGGACACACAGGGCGCCTTCGACAGC
CAGAGCACGGTGCGCGATTGTGCCACCGTTTTTGCGTTGAGCACAATGCT
GTCCTCGGTGCAGATATACAACCTGTCACAGAACATCCAGGAGGACGACC
TGCAGCACCTGCAGCTCTTCACTGAGTATGGTCGCCTCGCGCTGGCCGAC
ACCGGCAAAAAGCCGTTCCAGCGTCTGCAGTTCCTCGTCCGGGACTGGAG
CTTTCCCTACGAGGCGGAATATGGTGCACTGGGCGGGGATAAGATTCTGA
AACGACGTCTGGAGGTGTCCGACAAACAGCACCCAGAACTACAGTCCCTG
CGTCGCCACATTTCGTCCTGTTTCACGGAGGTGGCCTGCTTCCTGATGCC
CCATCCAGGTCTCAATGTGGCCACCAATCCTAAATTTGACGGTCGGCTGC
AGGACATCACGCCCGAGTTTAAGAGTAGCCTGCGCTCCCTGGTGCCCATG
CTGCTGGCACCGGACAACCTTGTCTACAAGGAGATCAGCGGACAGCGGGT
GCGGGCCCGCGATCTCATCCAGTACTTCCAATCGTACATGAACATCTACA
AGGGCAACGAGCTGCCCGAGCCGAAGAGCATGCTGGTGGCCACCGCAGAG
GCTAACCATTTGACTGCCGTGGCCGCCGCCAAGGAGCTGTACGGACAGCT
CATGGAGGAGGTGTGCGGTGGAACGCGGCCGTACTTAAGCACCGCCCATC
TCCAGACGGAGCACCTGCGGGTGAAGGACAAGGCACTGTTCCAGTTCGCC
GCCAAGCGCAAGATGGGTGGTGAGGAGTTCACCGAGAAATTCCGCAAGCA
ACTGGAAGATGATCTTGAGGAGGTCTTCACCAACTACCAAGCACACAACG
AGAGCAAGAACATCTTTAAGGCAGCACGGACACCGGCGGTGTACTTCGCC
TGCGCCGTCATCATGTACATCCTTAGCGGCATCTTTGGATTGGTGGGTCT
CTATACGTTCGCCAACTTCTGCAACCTGGTTATGGGTGTGGCGCTTCTAA
CGCTGGCTCTGTGGGCCTACATTAGATATAGCGGAGAGCTCAGCGACTTT
GGCGGCAAGTTGGATGACTTTGCAACGCTATTGTGGGAGAAATTCATGCG
ACCCATCTATCACGGCTGCATGGAGAAGGGCATCCACCATGTTGCCACTC
ATGCGACCGAAATGGCTGTCGGCGGAGGCGCAGCCTCCTACCGCTCCCAG
ACCTCGGTGAATGCGTCCAATGGCAAGGTGAAGCGGTCATGAAAGCTTTC
TAGACCAT
BS07051.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
atl-RC | 1626 | CG6668-PC | 1..1626 | 17..1642 | 8130 | 100 | Plus |
atl-RB | 1626 | CG6668-PB | 1..1626 | 17..1642 | 8130 | 100 | Plus |
atl-RA | 1626 | CG6668-PA | 1..1626 | 17..1642 | 8130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
atl-RC | 2907 | CG6668-RC | 275..1900 | 17..1642 | 8130 | 100 | Plus |
atl-RB | 3207 | CG6668-RB | 575..2200 | 17..1642 | 8130 | 100 | Plus |
atl-RA | 2889 | CG6668-RA | 257..1882 | 17..1642 | 8130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24632155..24633370 | 210..1425 | 6080 | 100 | Plus |
3R | 32079331 | 3R | 24631897..24632091 | 17..211 | 975 | 100 | Plus |
3R | 32079331 | 3R | 24633558..24633707 | 1493..1642 | 750 | 100 | Plus |
3R | 32079331 | 3R | 24633431..24633499 | 1424..1492 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:55:56 has no hits.
BS07051.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:16 Download gff for
BS07051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-RB | 1..1626 | 17..1642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:51 Download gff for
BS07051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-RB | 566..2195 | 9..1642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:44 Download gff for
BS07051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-RA | 257..1881 | 17..1641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:16 Download gff for
BS07051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-RB | 566..2195 | 9..1642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:08 Download gff for
BS07051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
atl-RA | 257..1881 | 17..1641 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:08 Download gff for
BS07051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24631897..24632091 | 17..211 | 100 | -> | Plus |
3R | 24632157..24633370 | 212..1425 | 100 | -> | Plus |
3R | 24633433..24633499 | 1426..1492 | 100 | -> | Plus |
3R | 24633558..24633706 | 1493..1641 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:44 Download gff for
BS07051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20457619..20457813 | 17..211 | 100 | -> | Plus |
arm_3R | 20457879..20459092 | 212..1425 | 100 | -> | Plus |
arm_3R | 20459155..20459221 | 1426..1492 | 100 | -> | Plus |
arm_3R | 20459280..20459428 | 1493..1641 | 100 | | Plus |
BS07051.pep Sequence
Translation from 16 to 1641
> BS07051.pep
MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKG
KSFLLDFFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILM
WSDIFLHDYPNGDKIAIILLDTQGAFDSQSTVRDCATVFALSTMLSSVQI
YNLSQNIQEDDLQHLQLFTEYGRLALADTGKKPFQRLQFLVRDWSFPYEA
EYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVACFLMPHPGLN
VATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDL
IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVC
GGTRPYLSTAHLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDL
EEVFTNYQAHNESKNIFKAARTPAVYFACAVIMYILSGIFGLVGLYTFAN
FCNLVMGVALLTLALWAYIRYSGELSDFGGKLDDFATLLWEKFMRPIYHG
CMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKRS*
BS07051.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
atl-PC | 541 | CG6668-PC | 1..541 | 1..541 | 2819 | 100 | Plus |
atl-PB | 541 | CG6668-PB | 1..541 | 1..541 | 2819 | 100 | Plus |
atl-PA | 541 | CG6668-PA | 1..541 | 1..541 | 2819 | 100 | Plus |