Clone BS07054 Report

Search the DGRC for BS07054

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCSN4-RA
Protein status:BS07054.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07054.3prime Sequence

968 bp (882 high quality bases) assembled on 2006-01-06

> BS07054.3prime
ATGGTCTAGAAAGCTTTCAGTTCAGGTTATCCATCCAATCGGGCTCGGCG
ACACTTATCTTCTCTATAATGGAATTAACCTGATAGCATAGCGACTGGAT
CTGCCTATCCCACTGAGGCAGTAGTTCCCGATTCTCGAAGTGCACAATGG
CCGAGATCTGGTCGATGTGTCCGTTCATGCGACCTTCGGTAATCATCTGA
GAGGCAATCTTCTCTGCTTTCACCGCGGGTATGTCCAGCAGAGCGCCTAG
CTCCTCAAAAGTTATGTTGTTGTACAGCTTACTAGCCGACAACAGATTGT
GCTCGAAAACAGCCCGATCCAAGATCGAGGATCCATCGGAGGTGGCAGCC
TTTTGGTGGTCCTGCAGCAGGGCCTCGAACTCCTGTAGCTCGGAGCGCCG
AATGATGCGCTCCAAGTACATCTTTTCCAAAATTCCATAGGCCGGCAAGT
GCTGACAGCGTTCATCCTTGAACAGAGTGGCCAGCATGCGGGAACGCTGC
TGTCCGGCAGAGGCGAGGACTGTGCAGATGAGCGCTTTCTTCAGTGCCGT
CATCCTCTCGCCTTGGTCCACGATCTTGCGGTAGGAGAGCTCGTTATATC
GCTGGGCGGCCTCGATAAACTTGCGCCTGTAATCCAGGACACGAGCATAA
CAGACTTTATATAGAACCTGCAACTCCTCGGAATTAGTTTCGGCCTGCAG
CAATGATGCCCGGTTGATGAACAGCTCCGCCTGCACCGAATCGTTGTCCT
CCAGATAGAGTCGAGCGATCTTTAAGTAGGTGCCCAACTTGCACTCCACG
GAGTACTGTTTCTGACCCGTCTCCAGAGGAATGCCAACTAGCACTGTGGC
CGCATCGCGCCACTGCTGGTTGCGCTCATAGATGTTGGGCAGGTGGAAAC
GTATGCCAGCCACTTGCTCTTCGAACGAGATGACGCGCGGATTGACCTTT
TCCGGGGTGAAGTGAGAA

BS07054.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8725-PA 1224 CSN4-RA 273..1224 968..17 4710 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CSN4-RB 1466 CG8725-RB 314..1266 968..16 4735 99.8 Minus
CSN4-RA 1703 CG8725-RA 551..1503 968..16 4735 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7973246..7973899 669..16 3270 100 Minus
2R 25286936 2R 7972888..7973190 968..666 1485 99.3 Minus
Blast to na_te.dros performed on 2015-02-02 19:45:23 has no hits.

BS07054.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:34 Download gff for BS07054.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN4-PA 275..1224 17..966 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:19 Download gff for BS07054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8725-PA 275..1224 17..966 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:02:08 Download gff for BS07054.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 551..1510 8..968 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:21 Download gff for BS07054.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 551..1510 8..968 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:21 Download gff for BS07054.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7972888..7973188 668..968 99 -> Minus
2R 7973248..7973906 8..667 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:02:08 Download gff for BS07054.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3860393..3860693 668..968 99 -> Minus
arm_2R 3860753..3861411 8..667 99   Minus

BS07054.5prime Sequence

893 bp (828 high quality bases) assembled on 2006-01-06

> BS07054.5prime
GAAGTTATCAGTCGACATGGCCGCAAACTACGGCATCTCGACGGCAGCTC
TGCGTAGCCAGCTGATGGGCCTGATCAACTTCACTGGCACGCACAAGGAC
CAGGCGGACAAGTACCGCCAGCTGCTGAAGACTGTGCTGACGAACACCGG
CCAAGAGCTGATCGATGGGCTCCGGCTCTTTGTGGAGGCCATTGTAAACG
AGCACGTCAGCCTGGTGATCTCGCGGCAGATCCTTAACGACGTGGGCAGC
GAGCTGAGCAAGTTGCCTGACGATCTGTCCAAGATGCTTTCTCACTTCAC
CCTGGAAAAGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCAAGTGGCTG
GCATACGTTTCCACCTGGCCAACATCTATGAGCGCAACCAGCAGTGGCGC
GATGCGGCCACAGTGCTAGTTGGCATTCCTCTGGAGACGGGTCAGAAACA
GTACTCCGTGGAGTGCAAGTTGGGCACCTACTTAAAGATCGCTCGACTCT
ATCTGGAGGACAACGATTCGGTGCAGGCGGAGCTGTTCATCAACCGGGCA
TCATTGCTGCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTTCTATATAA
AGTCTGTTATGCTCGTGTCCTGGATTACAGGCGCAAGTTTATCGAGGCCG
CCCAGCGATATAACGAGCTCTCCTACCGCAAGATCGTGGACCAAGGCGAG
AGGATGACGGCACTGAAGAAAGCGCTCATCTGCACAGTCCTCGCCTCTGC
CGGACAGCAGCGTTCCCGCATGCTGGCCACTCTGTTCAAGGATGAACGCT
GTCAGCACTTGCCGGCCTATGGAATTTTGGAAAAGATGTACTTGGAGCGC
ATCATTCGGCGCTCCGAGCTACAGGAGTTCGAGGCCCTGCTGC

BS07054.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8725-PA 1224 CSN4-RA 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
CSN4-RB 1466 CG8725-RB 42..918 17..893 4385 100 Plus
CSN4-RA 1703 CG8725-RA 279..1155 17..893 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7972616..7973190 17..591 2875 100 Plus
2R 25286936 2R 7973246..7973551 588..893 1530 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:28:58 has no hits.

BS07054.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:36 Download gff for BS07054.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN4-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:20 Download gff for BS07054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8725-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:59:41 Download gff for BS07054.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 268..1155 6..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:45 Download gff for BS07054.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 268..1155 6..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:45 Download gff for BS07054.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7973248..7973551 590..893 100   Plus
2R 7972605..7973188 6..589 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:59:41 Download gff for BS07054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3860110..3860693 6..589 99 -> Plus
arm_2R 3860753..3861056 590..893 100   Plus

BS07054.complete Sequence

1256 bp (1256 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635707

> BS07054.complete
GAAGTTATCAGTCGACATGGCCGCAAACTACGGCATCTCGACGGCAGCTC
TGCGTAGCCAGCTGATGGGCCTGATCAACTTCACTGGCACGCACAAGGAC
CAGGCGGACAAGTACCGCCAGCTGCTGAAGACTGTGCTGACGAACACCGG
CCAAGAGCTGATCGATGGGCTCCGGCTCTTTGTGGAGGCCATTGTAAACG
AGCACGTCAGCCTGGTGATCTCGCGGCAGATCCTTAACGACGTGGGCAGC
GAGCTGAGCAAGTTGCCTGACGATCTGTCCAAGATGCTTTCTCACTTCAC
CCTGGAAAAGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCAAGTGGCTG
GCATACGTTTCCACCTGGCCAACATCTATGAGCGCAACCAGCAGTGGCGC
GATGCGGCCACAGTGCTAGTTGGCATTCCTCTGGAGACGGGTCAGAAACA
GTACTCCGTGGAGTGCAAGTTGGGCACCTACTTAAAGATCGCTCGACTCT
ATCTGGAGGACAACGATTCGGTGCAGGCGGAGCTGTTCATCAACCGGGCA
TCATTGCTGCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTTCTATATAA
AGTCTGTTATGCTCGTGTCCTGGATTACAGGCGCAAGTTTATCGAGGCCG
CCCAGCGATATAACGAGCTCTCCTACCGCAAGATCGTGGACCAAGGCGAG
AGGATGACGGCACTGAAGAAAGCGCTCATCTGCACAGTCCTCGCCTCTGC
CGGACAGCAGCGTTCCCGCATGCTGGCCACTCTGTTCAAGGATGAACGCT
GTCAGCACTTGCCGGCCTATGGAATTTTGGAAAAGATGTACTTGGAGCGC
ATCATTCGGCGCTCCGAGCTACAGGAGTTCGAGGCCCTGCTGCAGGACCA
CCAAAAGGCTGCCACCTCCGATGGATCCTCGATCTTGGATCGGGCTGTTT
TCGAGCACAATCTGTTGTCGGCTAGTAAGCTGTACAACAACATAACTTTT
GAGGAGCTAGGCGCTCTGCTGGACATACCCGCGGTGAAAGCAGAGAAGAT
TGCCTCTCAGATGATTACCGAAGGTCGCATGAACGGACACATCGACCAGA
TCTCGGCCATTGTGCACTTCGAGAATCGGGAACTACTGCCTCAGTGGGAT
AGGCAGATCCAGTCGCTATGCTATCAGGTTAATTCCATTATAGAGAAGAT
AAGTGTCGCCGAGCCCGATTGGATGGATAACCTGAACTGAAAGCTTTCTA
GACCAT

BS07054.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
CSN4-RB 1224 CG8725-PB 1..1224 17..1240 6120 100 Plus
CSN4-RA 1224 CG8725-PA 1..1224 17..1240 6120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
CSN4-RB 1466 CG8725-RB 42..1266 17..1241 6125 100 Plus
CSN4-RA 1703 CG8725-RA 279..1503 17..1241 6125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7973246..7973899 588..1241 3270 100 Plus
2R 25286936 2R 7972616..7973190 17..591 2875 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:56:19 has no hits.

BS07054.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:17 Download gff for BS07054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 1..1224 17..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:53 Download gff for BS07054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 268..1510 6..1249 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:49 Download gff for BS07054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 279..1501 17..1239 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:17 Download gff for BS07054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 268..1510 6..1249 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:29 Download gff for BS07054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 279..1501 17..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:29 Download gff for BS07054.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7972616..7973188 17..589 100 -> Plus
2R 7973248..7973897 590..1239 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:49 Download gff for BS07054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3860121..3860693 17..589 100 -> Plus
arm_2R 3860753..3861402 590..1239 100   Plus

BS07054.pep Sequence

Translation from 16 to 1239

> BS07054.pep
MAANYGISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELID
GLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPDDLSKMLSHFTLEKVN
PRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVEC
KLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYAR
VLDYRRKFIEAAQRYNELSYRKIVDQGERMTALKKALICTVLASAGQQRS
RMLATLFKDERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAAT
SDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMI
TEGRMNGHIDQISAIVHFENRELLPQWDRQIQSLCYQVNSIIEKISVAEP
DWMDNLN*

BS07054.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
CSN4-PB 407 CG8725-PB 1..407 1..407 2047 100 Plus
CSN4-PA 407 CG8725-PA 1..407 1..407 2047 100 Plus