Clone Sequence Records
BS07054.3prime Sequence
968 bp (882 high quality bases) assembled on 2006-01-06
> BS07054.3prime
ATGGTCTAGAAAGCTTTCAGTTCAGGTTATCCATCCAATCGGGCTCGGCG
ACACTTATCTTCTCTATAATGGAATTAACCTGATAGCATAGCGACTGGAT
CTGCCTATCCCACTGAGGCAGTAGTTCCCGATTCTCGAAGTGCACAATGG
CCGAGATCTGGTCGATGTGTCCGTTCATGCGACCTTCGGTAATCATCTGA
GAGGCAATCTTCTCTGCTTTCACCGCGGGTATGTCCAGCAGAGCGCCTAG
CTCCTCAAAAGTTATGTTGTTGTACAGCTTACTAGCCGACAACAGATTGT
GCTCGAAAACAGCCCGATCCAAGATCGAGGATCCATCGGAGGTGGCAGCC
TTTTGGTGGTCCTGCAGCAGGGCCTCGAACTCCTGTAGCTCGGAGCGCCG
AATGATGCGCTCCAAGTACATCTTTTCCAAAATTCCATAGGCCGGCAAGT
GCTGACAGCGTTCATCCTTGAACAGAGTGGCCAGCATGCGGGAACGCTGC
TGTCCGGCAGAGGCGAGGACTGTGCAGATGAGCGCTTTCTTCAGTGCCGT
CATCCTCTCGCCTTGGTCCACGATCTTGCGGTAGGAGAGCTCGTTATATC
GCTGGGCGGCCTCGATAAACTTGCGCCTGTAATCCAGGACACGAGCATAA
CAGACTTTATATAGAACCTGCAACTCCTCGGAATTAGTTTCGGCCTGCAG
CAATGATGCCCGGTTGATGAACAGCTCCGCCTGCACCGAATCGTTGTCCT
CCAGATAGAGTCGAGCGATCTTTAAGTAGGTGCCCAACTTGCACTCCACG
GAGTACTGTTTCTGACCCGTCTCCAGAGGAATGCCAACTAGCACTGTGGC
CGCATCGCGCCACTGCTGGTTGCGCTCATAGATGTTGGGCAGGTGGAAAC
GTATGCCAGCCACTTGCTCTTCGAACGAGATGACGCGCGGATTGACCTTT
TCCGGGGTGAAGTGAGAA
BS07054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8725-PA | 1224 | CSN4-RA | 273..1224 | 968..17 | 4710 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN4-RB | 1466 | CG8725-RB | 314..1266 | 968..16 | 4735 | 99.8 | Minus |
CSN4-RA | 1703 | CG8725-RA | 551..1503 | 968..16 | 4735 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7973246..7973899 | 669..16 | 3270 | 100 | Minus |
2R | 25286936 | 2R | 7972888..7973190 | 968..666 | 1485 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:45:23 has no hits.
BS07054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:34 Download gff for
BS07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-PA | 275..1224 | 17..966 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:19 Download gff for
BS07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8725-PA | 275..1224 | 17..966 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:02:08 Download gff for
BS07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-RA | 551..1510 | 8..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:21 Download gff for
BS07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-RA | 551..1510 | 8..968 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:21 Download gff for
BS07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7972888..7973188 | 668..968 | 99 | -> | Minus |
2R | 7973248..7973906 | 8..667 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:02:08 Download gff for
BS07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3860393..3860693 | 668..968 | 99 | -> | Minus |
arm_2R | 3860753..3861411 | 8..667 | 99 | | Minus |
BS07054.5prime Sequence
893 bp (828 high quality bases) assembled on 2006-01-06
> BS07054.5prime
GAAGTTATCAGTCGACATGGCCGCAAACTACGGCATCTCGACGGCAGCTC
TGCGTAGCCAGCTGATGGGCCTGATCAACTTCACTGGCACGCACAAGGAC
CAGGCGGACAAGTACCGCCAGCTGCTGAAGACTGTGCTGACGAACACCGG
CCAAGAGCTGATCGATGGGCTCCGGCTCTTTGTGGAGGCCATTGTAAACG
AGCACGTCAGCCTGGTGATCTCGCGGCAGATCCTTAACGACGTGGGCAGC
GAGCTGAGCAAGTTGCCTGACGATCTGTCCAAGATGCTTTCTCACTTCAC
CCTGGAAAAGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCAAGTGGCTG
GCATACGTTTCCACCTGGCCAACATCTATGAGCGCAACCAGCAGTGGCGC
GATGCGGCCACAGTGCTAGTTGGCATTCCTCTGGAGACGGGTCAGAAACA
GTACTCCGTGGAGTGCAAGTTGGGCACCTACTTAAAGATCGCTCGACTCT
ATCTGGAGGACAACGATTCGGTGCAGGCGGAGCTGTTCATCAACCGGGCA
TCATTGCTGCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTTCTATATAA
AGTCTGTTATGCTCGTGTCCTGGATTACAGGCGCAAGTTTATCGAGGCCG
CCCAGCGATATAACGAGCTCTCCTACCGCAAGATCGTGGACCAAGGCGAG
AGGATGACGGCACTGAAGAAAGCGCTCATCTGCACAGTCCTCGCCTCTGC
CGGACAGCAGCGTTCCCGCATGCTGGCCACTCTGTTCAAGGATGAACGCT
GTCAGCACTTGCCGGCCTATGGAATTTTGGAAAAGATGTACTTGGAGCGC
ATCATTCGGCGCTCCGAGCTACAGGAGTTCGAGGCCCTGCTGC
BS07054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8725-PA | 1224 | CSN4-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN4-RB | 1466 | CG8725-RB | 42..918 | 17..893 | 4385 | 100 | Plus |
CSN4-RA | 1703 | CG8725-RA | 279..1155 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7972616..7973190 | 17..591 | 2875 | 100 | Plus |
2R | 25286936 | 2R | 7973246..7973551 | 588..893 | 1530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:28:58 has no hits.
BS07054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:36 Download gff for
BS07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:20 Download gff for
BS07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8725-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:59:41 Download gff for
BS07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-RA | 268..1155 | 6..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:45 Download gff for
BS07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-RA | 268..1155 | 6..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:45 Download gff for
BS07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7973248..7973551 | 590..893 | 100 | | Plus |
2R | 7972605..7973188 | 6..589 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:59:41 Download gff for
BS07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3860110..3860693 | 6..589 | 99 | -> | Plus |
arm_2R | 3860753..3861056 | 590..893 | 100 | | Plus |
BS07054.complete Sequence
1256 bp (1256 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635707
> BS07054.complete
GAAGTTATCAGTCGACATGGCCGCAAACTACGGCATCTCGACGGCAGCTC
TGCGTAGCCAGCTGATGGGCCTGATCAACTTCACTGGCACGCACAAGGAC
CAGGCGGACAAGTACCGCCAGCTGCTGAAGACTGTGCTGACGAACACCGG
CCAAGAGCTGATCGATGGGCTCCGGCTCTTTGTGGAGGCCATTGTAAACG
AGCACGTCAGCCTGGTGATCTCGCGGCAGATCCTTAACGACGTGGGCAGC
GAGCTGAGCAAGTTGCCTGACGATCTGTCCAAGATGCTTTCTCACTTCAC
CCTGGAAAAGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCAAGTGGCTG
GCATACGTTTCCACCTGGCCAACATCTATGAGCGCAACCAGCAGTGGCGC
GATGCGGCCACAGTGCTAGTTGGCATTCCTCTGGAGACGGGTCAGAAACA
GTACTCCGTGGAGTGCAAGTTGGGCACCTACTTAAAGATCGCTCGACTCT
ATCTGGAGGACAACGATTCGGTGCAGGCGGAGCTGTTCATCAACCGGGCA
TCATTGCTGCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTTCTATATAA
AGTCTGTTATGCTCGTGTCCTGGATTACAGGCGCAAGTTTATCGAGGCCG
CCCAGCGATATAACGAGCTCTCCTACCGCAAGATCGTGGACCAAGGCGAG
AGGATGACGGCACTGAAGAAAGCGCTCATCTGCACAGTCCTCGCCTCTGC
CGGACAGCAGCGTTCCCGCATGCTGGCCACTCTGTTCAAGGATGAACGCT
GTCAGCACTTGCCGGCCTATGGAATTTTGGAAAAGATGTACTTGGAGCGC
ATCATTCGGCGCTCCGAGCTACAGGAGTTCGAGGCCCTGCTGCAGGACCA
CCAAAAGGCTGCCACCTCCGATGGATCCTCGATCTTGGATCGGGCTGTTT
TCGAGCACAATCTGTTGTCGGCTAGTAAGCTGTACAACAACATAACTTTT
GAGGAGCTAGGCGCTCTGCTGGACATACCCGCGGTGAAAGCAGAGAAGAT
TGCCTCTCAGATGATTACCGAAGGTCGCATGAACGGACACATCGACCAGA
TCTCGGCCATTGTGCACTTCGAGAATCGGGAACTACTGCCTCAGTGGGAT
AGGCAGATCCAGTCGCTATGCTATCAGGTTAATTCCATTATAGAGAAGAT
AAGTGTCGCCGAGCCCGATTGGATGGATAACCTGAACTGAAAGCTTTCTA
GACCAT
BS07054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN4-RB | 1224 | CG8725-PB | 1..1224 | 17..1240 | 6120 | 100 | Plus |
CSN4-RA | 1224 | CG8725-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN4-RB | 1466 | CG8725-RB | 42..1266 | 17..1241 | 6125 | 100 | Plus |
CSN4-RA | 1703 | CG8725-RA | 279..1503 | 17..1241 | 6125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7973246..7973899 | 588..1241 | 3270 | 100 | Plus |
2R | 25286936 | 2R | 7972616..7973190 | 17..591 | 2875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:19 has no hits.
BS07054.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:17 Download gff for
BS07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-RA | 1..1224 | 17..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:53 Download gff for
BS07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-RA | 268..1510 | 6..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:49 Download gff for
BS07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-RA | 279..1501 | 17..1239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:17 Download gff for
BS07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-RA | 268..1510 | 6..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:29 Download gff for
BS07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN4-RA | 279..1501 | 17..1239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:29 Download gff for
BS07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7972616..7973188 | 17..589 | 100 | -> | Plus |
2R | 7973248..7973897 | 590..1239 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:49 Download gff for
BS07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3860121..3860693 | 17..589 | 100 | -> | Plus |
arm_2R | 3860753..3861402 | 590..1239 | 100 | | Plus |
BS07054.pep Sequence
Translation from 16 to 1239
> BS07054.pep
MAANYGISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELID
GLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPDDLSKMLSHFTLEKVN
PRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVEC
KLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYAR
VLDYRRKFIEAAQRYNELSYRKIVDQGERMTALKKALICTVLASAGQQRS
RMLATLFKDERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAAT
SDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMI
TEGRMNGHIDQISAIVHFENRELLPQWDRQIQSLCYQVNSIIEKISVAEP
DWMDNLN*
BS07054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN4-PB | 407 | CG8725-PB | 1..407 | 1..407 | 2047 | 100 | Plus |
CSN4-PA | 407 | CG8725-PA | 1..407 | 1..407 | 2047 | 100 | Plus |