Clone BS07057 Report

Search the DGRC for BS07057

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG2121-RA
Protein status:BS07057.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07057.3prime Sequence

880 bp (810 high quality bases) assembled on 2006-01-06

> BS07057.3prime
ATGGTCTAGAAAGCTTTCAGTCACTCAGCATGACTTCCAAGTTCTTTTGC
TTCTGCCAAAAGCGGTACTCGATGAGGCCATATCCCACGCAACCCACTAA
AATAAAAATAATCAAAATCACCAATTTCGTGGAGGTGCAAAGCTGCGAAC
TGATGACGTAGCCGATAACAGAACCAGTGCTTTCCCACAGGCGGAAGTTG
CTATAAGCGGCAATCAGATGGTTCGGAAACAGAATGCCATAAAAAGCATT
GACCACAACCAGCCAGACTCCATCGCAGATGCCCCAAACCGCCGCAAAGG
TGCAGTAGCTCATATAGTCGCCCTCTCGCGCTTCCCAGGTGTACATGTAG
GTGAGCAGACAGAGGTTGACCACGGCACATAGTGCGGCCAGAGTGACCCG
TCCAATGCGCTCCACCAGCGCGCCTGCGATCCCGGCAGCCACCGCATTCG
CCACGCCAAAGCATATCATTGCGAACCCGATTCTAGAGATCCCCCATCCG
CAGGCCACAAACGAACGGGTGAAGTCCACGGCCAGGAAGGCCTCCTCCAG
CCCGATGAACATCGTGATGGGCAGCATCAGGATTTGGCGACGTTTGCGCA
GAAGATTTATGGTCACCGTGAGGAGCTTTAGCCCCGACATCCCGTCGCCA
GTGTCTCCGCGCTTTACTCCATAGCGTTTGAGGGAGCTCACGCCGAAGAT
CATCATGACCACCGCCGCTGCCATGCAGGTGAGGAAGATGGAGTTGAGCA
GCTGGATCTGCTCCGGAGCTGGGGGCACTAGGTTTGGATTGGCCTCTGCT
CCCACTCCGGGACAGAAACGGGCCCCGCAGAGTTCGGCCACCCTGTTTCT
CTCCAGTTCCCGCTGCACCTCCAGCTCGAA

BS07057.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2121-PA 1569 CG2121-RA 706..1569 880..17 4320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2121-RB 1973 CG2121-RB 933..1796 880..17 4320 100 Minus
CG2121-RA 1910 CG2121-RA 870..1733 880..17 4320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8396928..8397356 247..675 2145 100 Plus
2R 25286936 2R 8397614..8397819 675..880 1030 100 Plus
2R 25286936 2R 8396703..8396866 84..247 820 100 Plus
2R 25286936 2R 8396574..8396641 17..84 340 100 Plus
Blast to na_te.dros performed on 2015-02-03 12:20:26 has no hits.

BS07057.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:39 Download gff for BS07057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2121-PA 708..1569 17..878 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:24 Download gff for BS07057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2121-PA 708..1569 17..878 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:48:56 Download gff for BS07057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 870..1746 6..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:40:29 Download gff for BS07057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 870..1746 6..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:40:29 Download gff for BS07057.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8396561..8396640 6..83 95 <- Plus
2R 8396703..8396865 84..246 100 <- Plus
2R 8396928..8397355 247..674 100 <- Plus
2R 8397614..8397819 675..880 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:48:56 Download gff for BS07057.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4284066..4284145 6..83 95 <- Plus
arm_2R 4284208..4284370 84..246 100 <- Plus
arm_2R 4284433..4284860 247..674 100 <- Plus
arm_2R 4285119..4285324 675..880 100   Plus

BS07057.5prime Sequence

797 bp (755 high quality bases) assembled on 2006-01-06

> BS07057.5prime
GAAGTTATCAGTCGACATGGTTTACCCCAGTGACACGTCGGACGCCAACA
ACGAGGAGCTGGCGCTGGAGCACAGTGTTGCACATGGCAATGTCCACGGT
AACGGCACTGGCACTGGTGGTAGCTCACCCGGGACAACAACTGCTCCGAA
CGGGGACAACAAAGTCAATCAGCGCCATTACGAGCCGGCCGAGCGCTTCA
TCATCACCAAGAACGTGGTCGTGATAGGCCTGGCTTTCATGATTCACTTC
ACGGCCTTCCACGGCACATCGAATCTGCAGAGCTCGGTGAACGCGGATAA
GGCCCTGGGCACCACCACGCTTGCCGTCATCTACGGCTCGCTGATACTGT
CCAACATCTTCCTGCCGATGACCGTGATAAGATGGTTCGGTTGCCGGTTG
ACCATGGCGCTGGCCCTCTTCGCCTACATGCCCTACATAGCCGCCCAGTT
TTACCCACGGTTCGAGACCCTAATCCCGGCGGCCCTGATGGTGGGTTTCG
GTGGCGGGCCATTGTGGTGCTCCAAGTGCACCTACCTATCCACCGTCTCC
GAGGCACTTACCCAGGTGCGGGGCAACAAGTCGCGTAAGGATGTGAACAC
CGTCAAGTTCTTCGGCCTGTTCTTCATCTTCTACCAGATGGCCCAGGTGT
GGGGCAACCTCATATCCTCCTCGGTTCTAACCCTGAGTGCCCCTGCTGCC
CAATCCGCGGCAAATGATTCTTTCGAGCTGGAGGTGCAGCGGGAACTGGA
GAGAAACAGGGTGGCCGAACTCTGCGGGGCCCGTTTCTGTCCCGGAG

BS07057.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2121-PA 1569 CG2121-RA 1..781 17..797 3905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2121-RB 1973 CG2121-RB 225..1008 14..797 3920 100 Plus
CG2121-RA 1910 CG2121-RA 162..945 14..797 3920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8397744..8398161 797..380 2090 100 Minus
2R 25286936 2R 8403891..8404258 381..14 1840 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:34:37 has no hits.

BS07057.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:40 Download gff for BS07057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2121-PA 1..781 17..797 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:26 Download gff for BS07057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2121-PA 1..781 17..797 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:59 Download gff for BS07057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 162..945 14..797 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:10 Download gff for BS07057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 162..945 14..797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:10 Download gff for BS07057.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8397744..8398159 382..797 100 <- Minus
2R 8403891..8404258 14..381 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:59 Download gff for BS07057.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4285249..4285664 382..797 100 <- Minus
arm_2R 4291396..4291763 14..381 100   Minus

BS07057.complete Sequence

1601 bp (1601 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635708

> BS07057.complete
GAAGTTATCAGTCGACATGGTTTACCCCAGTGACACGTCGGACGCCAACA
ACGAGGAGCTGGCGCTGGAGCACAGTGTTGCACATGGCAATGTCCACGGT
AACGGCACTGGCACTGGTGGTAGCTCACCCGGGACAACAACTGCTCCGAA
CGGGGACAACAAAGTCAATCAGCGCCATTACGAGCCGGCCGAGCGCTTCA
TCATCACCAAGAACGTGGTCGTGATAGGCCTGGCTTTCATGATTCACTTC
ACGGCCTTCCACGGCACATCGAATCTGCAGAGCTCGGTGAACGCGGATAA
GGCCCTGGGCACCACCACGCTTGCCGTCATCTACGGCTCGCTGATACTGT
CCAACATCTTCCTGCCGATGACCGTGATAAGATGGTTCGGTTGCCGGTTG
ACCATGGCGCTGGCCCTCTTCGCCTACATGCCCTACATAGCCGCCCAGTT
TTACCCACGGTTCGAGACCCTAATCCCGGCGGCCCTGATGGTGGGTTTCG
GTGGCGGGCCATTGTGGTGCTCCAAGTGCACCTACCTATCCACCGTCTCC
GAGGCACTTACCCAGGTGCGGGGCAACAAGTCGCGTAAGGATGTGAACAC
CGTCAAGTTCTTCGGCCTGTTCTTCATCTTCTACCAGATGGCCCAGGTGT
GGGGCAACCTCATATCCTCCTCGGTTCTAACCCTGAGTGCCCCTGCTGCC
CAATCCGCGGCAAATGATTCTTTCGAGCTGGAGGTGCAGCGGGAACTGGA
GAGAAACAGGGTGGCCGAACTCTGCGGGGCCCGTTTCTGTCCCGGAGTGG
GAGCAGAGGCCAATCCAAACCTAGTGCCCCCAGCTCCGGAGCAGATCCAG
CTGCTCAACTCCATCTTCCTCACCTGCATGGCAGCGGCGGTGGTCATGAT
GATCTTCGGCGTGAGCTCCCTCAAACGCTATGGAGTAAAGCGCGGAGACA
CTGGCGACGGGATGTCGGGGCTAAAGCTCCTCACGGTGACCATAAATCTT
CTGCGCAAACGTCGCCAAATCCTGATGCTGCCCATCACGATGTTCATCGG
GCTGGAGGAGGCCTTCCTGGCCGTGGACTTCACCCGTTCGTTTGTGGCCT
GCGGATGGGGGATCTCTAGAATCGGGTTCGCAATGATATGCTTTGGCGTG
GCGAATGCGGTGGCTGCCGGGATCGCAGGCGCGCTGGTGGAGCGCATTGG
ACGGGTCACTCTGGCCGCACTATGTGCCGTGGTCAACCTCTGTCTGCTCA
CCTACATGTACACCTGGGAAGCGCGAGAGGGCGACTATATGAGCTACTGC
ACCTTTGCGGCGGTTTGGGGCATCTGCGATGGAGTCTGGCTGGTTGTGGT
CAATGCTTTTTATGGCATTCTGTTTCCGAACCATCTGATTGCCGCTTATA
GCAACTTCCGCCTGTGGGAAAGCACTGGTTCTGTTATCGGCTACGTCATC
AGTTCGCAGCTTTGCACCTCCACGAAATTGGTGATTTTGATTATTTTTAT
TTTAGTGGGTTGCGTGGGATATGGCCTCATCGAGTACCGCTTTTGGCAGA
AGCAAAAGAACTTGGAAGTCATGCTGAGTGACTGAAAGCTTTCTAGACCA
T

BS07057.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2121-RB 1611 CG2121-PB 40..1611 14..1585 7860 100 Plus
CG2121-RA 1569 CG2121-PA 1..1569 17..1585 7845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2121-RB 1973 CG2121-RB 225..1796 14..1585 7860 100 Plus
CG2121-RA 1910 CG2121-RA 162..1733 14..1585 7860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8397614..8398161 927..380 2740 100 Minus
2R 25286936 2R 8396928..8397356 1355..927 2145 100 Minus
2R 25286936 2R 8403891..8404258 381..14 1840 100 Minus
2R 25286936 2R 8396703..8396866 1518..1355 820 100 Minus
2R 25286936 2R 8396574..8396641 1585..1518 340 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:53:18 has no hits.

BS07057.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:03 Download gff for BS07057.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RB 40..1611 14..1585 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:37 Download gff for BS07057.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RB 181..1765 14..1596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:22 Download gff for BS07057.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 165..1732 17..1584 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:03 Download gff for BS07057.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RB 181..1765 14..1596 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:56 Download gff for BS07057.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 165..1732 17..1584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:56 Download gff for BS07057.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8396575..8396640 1519..1584 100 <- Minus
2R 8396703..8396865 1356..1518 100 <- Minus
2R 8396928..8397355 928..1355 100 <- Minus
2R 8397614..8398159 382..927 100 <- Minus
2R 8403891..8404255 17..381 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:22 Download gff for BS07057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4284208..4284370 1356..1518 100 <- Minus
arm_2R 4284080..4284145 1519..1584 100 <- Minus
arm_2R 4284433..4284860 928..1355 100 <- Minus
arm_2R 4285119..4285664 382..927 100 <- Minus
arm_2R 4291396..4291760 17..381 100   Minus

BS07057.pep Sequence

Translation from 16 to 1584

> BS07057.pep
MVYPSDTSDANNEELALEHSVAHGNVHGNGTGTGGSSPGTTTAPNGDNKV
NQRHYEPAERFIITKNVVVIGLAFMIHFTAFHGTSNLQSSVNADKALGTT
TLAVIYGSLILSNIFLPMTVIRWFGCRLTMALALFAYMPYIAAQFYPRFE
TLIPAALMVGFGGGPLWCSKCTYLSTVSEALTQVRGNKSRKDVNTVKFFG
LFFIFYQMAQVWGNLISSSVLTLSAPAAQSAANDSFELEVQRELERNRVA
ELCGARFCPGVGAEANPNLVPPAPEQIQLLNSIFLTCMAAAVVMMIFGVS
SLKRYGVKRGDTGDGMSGLKLLTVTINLLRKRRQILMLPITMFIGLEEAF
LAVDFTRSFVACGWGISRIGFAMICFGVANAVAAGIAGALVERIGRVTLA
ALCAVVNLCLLTYMYTWEAREGDYMSYCTFAAVWGICDGVWLVVVNAFYG
ILFPNHLIAAYSNFRLWESTGSVIGYVISSQLCTSTKLVILIIFILVGCV
GYGLIEYRFWQKQKNLEVMLSD*

BS07057.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2121-PB 536 CG2121-PB 15..536 1..522 2707 100 Plus
CG2121-PA 522 CG2121-PA 1..522 1..522 2707 100 Plus
CG4928-PB 538 CG4928-PB 36..486 57..517 983 41.3 Plus
CG4928-PA 538 CG4928-PA 36..486 57..517 983 41.3 Plus
CG4928-PC 495 CG4928-PC 36..481 57..512 971 41.3 Plus