Clone BS07058 Report

Search the DGRC for BS07058

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCAH1-RA
Protein status:BS07058.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07058.3prime Sequence

843 bp (783 high quality bases) assembled on 2006-01-06

> BS07058.3prime
ATGGTCTAGAAAGCTTTTAGTGGCCCCCGATCTCGCGCAGCTCACGCTTG
CCCAGCGGCAGCGGAGGACGGAAGTTGTTGATGACCTTGCCGTTGAACTC
GTTGCAGGGGCACTCCTCCTTCACGTCGTAGGCATTGAGATTGCGCATGG
CGTTCAGCTGGTCGTCGGACACTTCGATGGGCGTCTTGAACACGATCCAG
ATGACCGACTCCGAGCACGGTGGAGTGGTCAGGGAACCCTCATAGGTCCA
ATAGGTGTGCACATCGGGCAGCAGCTGGCCGGGATCACAGCCCTGGGGGA
GGGTGACGCGATCGCCCTTGTGCAGCACGAACTGCAGCAGGCTGGTCACC
TTGTCCAGTTCGGCATGGTGATTGCCAGCCTTAAGGAACACACCCAGCAC
GGCCAGGCCGTCGGGAGCGGCAGCCGCCTCGCCAAACGACTTGTACTTCG
TGGTGTTCCAGTGAACCAAATGCAGCTCGCCGGAATAGGACACGCCGTCG
ACGGTGTGCTCCGATCCCTTGGAGTCCGTGCAGCCCCAGTGGCAGTGGAA
CTGCTCCAGCTTAAAGATCTGATCGCCCAGCGGTCCTCCAGTCAGCTCGG
AGTCGGCGCCGTTCACATCCACGCGCCAGCAATAGCCAGGATTGACCAGG
CTTTTGGTGTGCTCCGGCACATACTTCCACTTGAGCGGAGCTACATTCAG
TTCGCTGCCCTTCTTGGCGCTGGAGGGTGTGATATCCACGGGCGACTGAC
GATGTCCCGACGCCTGTGGGTACTCCTTGGCCCAGTGGGCAGGTCCGTTC
TCTTCGGTGTATCCCCAGTGGTGGCTCATGTCGACTGATAACT

BS07058.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7820-PA 813 CAH1-RA 1..813 829..17 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-RA 1456 CG7820-RA 304..1116 829..17 4065 100 Minus
adat-RA 3003 CG16889-RA 1764..2555 17..796 3760 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13809034..13809654 637..17 3105 100 Minus
2L 23513712 2L 13808808..13808968 796..636 805 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:11:24 has no hits.

BS07058.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:41 Download gff for BS07058.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-PA 1..813 17..829 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:29 Download gff for BS07058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7820-PA 1..813 17..829 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:21:36 Download gff for BS07058.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 296..1116 17..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:49:34 Download gff for BS07058.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 296..1116 17..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:49:34 Download gff for BS07058.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13808809..13808967 637..795 100 -> Minus
2L 13803921..13803962 796..836 92 -> Minus
2L 13809035..13809654 17..636 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:21:36 Download gff for BS07058.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13803921..13803962 796..836 92 -> Minus
arm_2L 13808809..13808967 637..795 100 -> Minus
arm_2L 13809035..13809654 17..636 100   Minus

BS07058.5prime Sequence

843 bp (842 high quality bases) assembled on 2006-01-06

> BS07058.5prime
GAAGTTATCAGTCGACATGAGCCACCACTGGGGATACACCGAAGAGAACG
GACCTGCCCACTGGGCCAAGGAGTACCCACAGGCGTCGGGACATCGTCAG
TCGCCCGTGGATATCACACCCTCCAGCGCCAAGAAGGGCAGCGAACTGAA
TGTAGCTCCGCTCAAGTGGAAGTATGTGCCGGAGCACACCAAAAGCCTGG
TCAATCCTGGCTATTGCTGGCGCGTGGATGTGAACGGCGCCGACTCCGAG
CTGACTGGAGGACCGCTGGGCGATCAGATCTTTAAGCTGGAGCAGTTCCA
CTGCCACTGGGGCTGCACGGACTCCAAGGGATCGGAGCACACCGTCGACG
GCGTGTCCTATTCCGGCGAGCTGCATTTGGTTCACTGGAACACCACGAAG
TACAAGTCGTTTGGCGAGGCGGCTGCCGCTCCCGACGGCCTGGCCGTGCT
GGGTGTGTTCCTTAAGGCTGGCAATCACCATGCCGAACTGGACAAGGTGA
CCAGCCTGCTGCAGTTCGTGCTGCACAAGGGCGATCGCGTCACCCTCCCC
CAGGGCTGTGATCCCGGCCAGCTGCTGCCCGATGTGCACACCTATTGGAC
CTATGAGGGTTCCCTGACCACTCCACCGTGCTCGGAGTCGGTCATCTGGA
TCGTGTTCAAGACGCCCATCGAAGTGTCCGACGACCAGCTGAACGCCATG
CGCAATCTCAATGCCTACGACGTGAAGGAGGAGTGCCCCTGCAACGAGTT
CAACGGCAAGGTCATCAACAACTTCCGTCCTCCGCTGCCGCTGGGCAAGC
GTGAGCTGCGCGAGATCGGGGGCCACTAAAAGCTTTCTAGACC

BS07058.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7820-PA 813 CAH1-RA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-RA 1456 CG7820-RA 304..1116 17..829 4065 100 Plus
adat-RA 3003 CG16889-RA 1764..2555 829..50 3760 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13809034..13809654 209..829 3105 100 Plus
2L 23513712 2L 13808808..13808968 50..210 805 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:01:00 has no hits.

BS07058.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:42 Download gff for BS07058.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:29 Download gff for BS07058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7820-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:46:28 Download gff for BS07058.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 296..1116 10..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:29 Download gff for BS07058.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 296..1116 10..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:29 Download gff for BS07058.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13808809..13808967 51..209 100 -> Plus
2L 13803921..13803962 10..50 92 -> Plus
2L 13809035..13809654 210..829 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:46:28 Download gff for BS07058.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13803921..13803962 10..50 92 -> Plus
arm_2L 13808809..13808967 51..209 100 -> Plus
arm_2L 13809035..13809654 210..829 100   Plus

BS07058.complete Sequence

845 bp (845 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635709

> BS07058.complete
GAAGTTATCAGTCGACATGAGCCACCACTGGGGATACACCGAAGAGAACG
GACCTGCCCACTGGGCCAAGGAGTACCCACAGGCGTCGGGACATCGTCAG
TCGCCCGTGGATATCACACCCTCCAGCGCCAAGAAGGGCAGCGAACTGAA
TGTAGCTCCGCTCAAGTGGAAGTATGTGCCGGAGCACACCAAAAGCCTGG
TCAATCCTGGCTATTGCTGGCGCGTGGATGTGAACGGCGCCGACTCCGAG
CTGACTGGAGGACCGCTGGGCGATCAGATCTTTAAGCTGGAGCAGTTCCA
CTGCCACTGGGGCTGCACGGACTCCAAGGGATCGGAGCACACCGTCGACG
GCGTGTCCTATTCCGGCGAGCTGCATTTGGTTCACTGGAACACCACGAAG
TACAAGTCGTTTGGCGAGGCGGCTGCCGCTCCCGACGGCCTGGCCGTGCT
GGGTGTGTTCCTTAAGGCTGGCAATCACCATGCCGAACTGGACAAGGTGA
CCAGCCTGCTGCAGTTCGTGCTGCACAAGGGCGATCGCGTCACCCTCCCC
CAGGGCTGTGATCCCGGCCAGCTGCTGCCCGATGTGCACACCTATTGGAC
CTATGAGGGTTCCCTGACCACTCCACCGTGCTCGGAGTCGGTCATCTGGA
TCGTGTTCAAGACGCCCATCGAAGTGTCCGACGACCAGCTGAACGCCATG
CGCAATCTCAATGCCTACGACGTGAAGGAGGAGTGCCCCTGCAACGAGTT
CAACGGCAAGGTCATCAACAACTTCCGTCCTCCGCTGCCGCTGGGCAAGC
GTGAGCTGCGCGAGATCGGGGGCCACTAAAAGCTTTCTAGACCAT

BS07058.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-RA 813 CG7820-PA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-RA 1456 CG7820-RA 304..1116 17..829 4065 100 Plus
adat-RA 3003 CG16889-RA 1764..2555 829..50 3730 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13809034..13809654 209..829 3105 100 Plus
2L 23513712 2L 13808808..13808968 50..210 805 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:54:13 has no hits.

BS07058.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:09 Download gff for BS07058.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:24 Download gff for BS07058.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 295..1115 10..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:09 Download gff for BS07058.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 304..1114 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:10 Download gff for BS07058.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 295..1115 10..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:48 Download gff for BS07058.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 304..1114 17..827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:48 Download gff for BS07058.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13803929..13803962 17..50 100 -> Plus
2L 13808809..13808967 51..209 100 -> Plus
2L 13809035..13809652 210..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:09 Download gff for BS07058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13803929..13803962 17..50 100 -> Plus
arm_2L 13808809..13808967 51..209 100 -> Plus
arm_2L 13809035..13809652 210..827 100   Plus

BS07058.pep Sequence

Translation from 16 to 828

> BS07058.pep
MSHHWGYTEENGPAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLK
WKYVPEHTKSLVNPGYCWRVDVNGADSELTGGPLGDQIFKLEQFHCHWGC
TDSKGSEHTVDGVSYSGELHLVHWNTTKYKSFGEAAAAPDGLAVLGVFLK
AGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLPDVHTYWTYEGSL
TTPPCSESVIWIVFKTPIEVSDDQLNAMRNLNAYDVKEECPCNEFNGKVI
NNFRPPLPLGKRELREIGGH*

BS07058.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-PA 270 CG7820-PA 1..270 1..270 1503 100 Plus
CAH2-PA 335 CG6906-PA 24..282 1..264 387 34.9 Plus
CG6074-PA 311 CG6074-PA 22..289 2..270 341 32.7 Plus
CG11284-PE 250 CG11284-PE 4..227 28..254 317 34.5 Plus
CG11284-PD 250 CG11284-PD 4..227 28..254 317 34.5 Plus