Clone Sequence Records
BS07058.3prime Sequence
843 bp (783 high quality bases) assembled on 2006-01-06
> BS07058.3prime
ATGGTCTAGAAAGCTTTTAGTGGCCCCCGATCTCGCGCAGCTCACGCTTG
CCCAGCGGCAGCGGAGGACGGAAGTTGTTGATGACCTTGCCGTTGAACTC
GTTGCAGGGGCACTCCTCCTTCACGTCGTAGGCATTGAGATTGCGCATGG
CGTTCAGCTGGTCGTCGGACACTTCGATGGGCGTCTTGAACACGATCCAG
ATGACCGACTCCGAGCACGGTGGAGTGGTCAGGGAACCCTCATAGGTCCA
ATAGGTGTGCACATCGGGCAGCAGCTGGCCGGGATCACAGCCCTGGGGGA
GGGTGACGCGATCGCCCTTGTGCAGCACGAACTGCAGCAGGCTGGTCACC
TTGTCCAGTTCGGCATGGTGATTGCCAGCCTTAAGGAACACACCCAGCAC
GGCCAGGCCGTCGGGAGCGGCAGCCGCCTCGCCAAACGACTTGTACTTCG
TGGTGTTCCAGTGAACCAAATGCAGCTCGCCGGAATAGGACACGCCGTCG
ACGGTGTGCTCCGATCCCTTGGAGTCCGTGCAGCCCCAGTGGCAGTGGAA
CTGCTCCAGCTTAAAGATCTGATCGCCCAGCGGTCCTCCAGTCAGCTCGG
AGTCGGCGCCGTTCACATCCACGCGCCAGCAATAGCCAGGATTGACCAGG
CTTTTGGTGTGCTCCGGCACATACTTCCACTTGAGCGGAGCTACATTCAG
TTCGCTGCCCTTCTTGGCGCTGGAGGGTGTGATATCCACGGGCGACTGAC
GATGTCCCGACGCCTGTGGGTACTCCTTGGCCCAGTGGGCAGGTCCGTTC
TCTTCGGTGTATCCCCAGTGGTGGCTCATGTCGACTGATAACT
BS07058.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7820-PA | 813 | CAH1-RA | 1..813 | 829..17 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH1-RA | 1456 | CG7820-RA | 304..1116 | 829..17 | 4065 | 100 | Minus |
adat-RA | 3003 | CG16889-RA | 1764..2555 | 17..796 | 3760 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13809034..13809654 | 637..17 | 3105 | 100 | Minus |
2L | 23513712 | 2L | 13808808..13808968 | 796..636 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:11:24 has no hits.
BS07058.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:41 Download gff for
BS07058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-PA | 1..813 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:29 Download gff for
BS07058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7820-PA | 1..813 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:21:36 Download gff for
BS07058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 296..1116 | 17..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:49:34 Download gff for
BS07058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 296..1116 | 17..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:49:34 Download gff for
BS07058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13808809..13808967 | 637..795 | 100 | -> | Minus |
2L | 13803921..13803962 | 796..836 | 92 | -> | Minus |
2L | 13809035..13809654 | 17..636 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:21:36 Download gff for
BS07058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13803921..13803962 | 796..836 | 92 | -> | Minus |
arm_2L | 13808809..13808967 | 637..795 | 100 | -> | Minus |
arm_2L | 13809035..13809654 | 17..636 | 100 | | Minus |
BS07058.5prime Sequence
843 bp (842 high quality bases) assembled on 2006-01-06
> BS07058.5prime
GAAGTTATCAGTCGACATGAGCCACCACTGGGGATACACCGAAGAGAACG
GACCTGCCCACTGGGCCAAGGAGTACCCACAGGCGTCGGGACATCGTCAG
TCGCCCGTGGATATCACACCCTCCAGCGCCAAGAAGGGCAGCGAACTGAA
TGTAGCTCCGCTCAAGTGGAAGTATGTGCCGGAGCACACCAAAAGCCTGG
TCAATCCTGGCTATTGCTGGCGCGTGGATGTGAACGGCGCCGACTCCGAG
CTGACTGGAGGACCGCTGGGCGATCAGATCTTTAAGCTGGAGCAGTTCCA
CTGCCACTGGGGCTGCACGGACTCCAAGGGATCGGAGCACACCGTCGACG
GCGTGTCCTATTCCGGCGAGCTGCATTTGGTTCACTGGAACACCACGAAG
TACAAGTCGTTTGGCGAGGCGGCTGCCGCTCCCGACGGCCTGGCCGTGCT
GGGTGTGTTCCTTAAGGCTGGCAATCACCATGCCGAACTGGACAAGGTGA
CCAGCCTGCTGCAGTTCGTGCTGCACAAGGGCGATCGCGTCACCCTCCCC
CAGGGCTGTGATCCCGGCCAGCTGCTGCCCGATGTGCACACCTATTGGAC
CTATGAGGGTTCCCTGACCACTCCACCGTGCTCGGAGTCGGTCATCTGGA
TCGTGTTCAAGACGCCCATCGAAGTGTCCGACGACCAGCTGAACGCCATG
CGCAATCTCAATGCCTACGACGTGAAGGAGGAGTGCCCCTGCAACGAGTT
CAACGGCAAGGTCATCAACAACTTCCGTCCTCCGCTGCCGCTGGGCAAGC
GTGAGCTGCGCGAGATCGGGGGCCACTAAAAGCTTTCTAGACC
BS07058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7820-PA | 813 | CAH1-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH1-RA | 1456 | CG7820-RA | 304..1116 | 17..829 | 4065 | 100 | Plus |
adat-RA | 3003 | CG16889-RA | 1764..2555 | 829..50 | 3760 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13809034..13809654 | 209..829 | 3105 | 100 | Plus |
2L | 23513712 | 2L | 13808808..13808968 | 50..210 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:01:00 has no hits.
BS07058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:42 Download gff for
BS07058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:29 Download gff for
BS07058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7820-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:46:28 Download gff for
BS07058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 296..1116 | 10..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:29 Download gff for
BS07058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 296..1116 | 10..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:29 Download gff for
BS07058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13808809..13808967 | 51..209 | 100 | -> | Plus |
2L | 13803921..13803962 | 10..50 | 92 | -> | Plus |
2L | 13809035..13809654 | 210..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:46:28 Download gff for
BS07058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13803921..13803962 | 10..50 | 92 | -> | Plus |
arm_2L | 13808809..13808967 | 51..209 | 100 | -> | Plus |
arm_2L | 13809035..13809654 | 210..829 | 100 | | Plus |
BS07058.complete Sequence
845 bp (845 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635709
> BS07058.complete
GAAGTTATCAGTCGACATGAGCCACCACTGGGGATACACCGAAGAGAACG
GACCTGCCCACTGGGCCAAGGAGTACCCACAGGCGTCGGGACATCGTCAG
TCGCCCGTGGATATCACACCCTCCAGCGCCAAGAAGGGCAGCGAACTGAA
TGTAGCTCCGCTCAAGTGGAAGTATGTGCCGGAGCACACCAAAAGCCTGG
TCAATCCTGGCTATTGCTGGCGCGTGGATGTGAACGGCGCCGACTCCGAG
CTGACTGGAGGACCGCTGGGCGATCAGATCTTTAAGCTGGAGCAGTTCCA
CTGCCACTGGGGCTGCACGGACTCCAAGGGATCGGAGCACACCGTCGACG
GCGTGTCCTATTCCGGCGAGCTGCATTTGGTTCACTGGAACACCACGAAG
TACAAGTCGTTTGGCGAGGCGGCTGCCGCTCCCGACGGCCTGGCCGTGCT
GGGTGTGTTCCTTAAGGCTGGCAATCACCATGCCGAACTGGACAAGGTGA
CCAGCCTGCTGCAGTTCGTGCTGCACAAGGGCGATCGCGTCACCCTCCCC
CAGGGCTGTGATCCCGGCCAGCTGCTGCCCGATGTGCACACCTATTGGAC
CTATGAGGGTTCCCTGACCACTCCACCGTGCTCGGAGTCGGTCATCTGGA
TCGTGTTCAAGACGCCCATCGAAGTGTCCGACGACCAGCTGAACGCCATG
CGCAATCTCAATGCCTACGACGTGAAGGAGGAGTGCCCCTGCAACGAGTT
CAACGGCAAGGTCATCAACAACTTCCGTCCTCCGCTGCCGCTGGGCAAGC
GTGAGCTGCGCGAGATCGGGGGCCACTAAAAGCTTTCTAGACCAT
BS07058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH1-RA | 813 | CG7820-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH1-RA | 1456 | CG7820-RA | 304..1116 | 17..829 | 4065 | 100 | Plus |
adat-RA | 3003 | CG16889-RA | 1764..2555 | 829..50 | 3730 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13809034..13809654 | 209..829 | 3105 | 100 | Plus |
2L | 23513712 | 2L | 13808808..13808968 | 50..210 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:54:13 has no hits.
BS07058.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:09 Download gff for
BS07058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:24 Download gff for
BS07058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 295..1115 | 10..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:09 Download gff for
BS07058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 304..1114 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:10 Download gff for
BS07058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 295..1115 | 10..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:48 Download gff for
BS07058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 304..1114 | 17..827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:48 Download gff for
BS07058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13803929..13803962 | 17..50 | 100 | -> | Plus |
2L | 13808809..13808967 | 51..209 | 100 | -> | Plus |
2L | 13809035..13809652 | 210..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:09 Download gff for
BS07058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13803929..13803962 | 17..50 | 100 | -> | Plus |
arm_2L | 13808809..13808967 | 51..209 | 100 | -> | Plus |
arm_2L | 13809035..13809652 | 210..827 | 100 | | Plus |
BS07058.pep Sequence
Translation from 16 to 828
> BS07058.pep
MSHHWGYTEENGPAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLK
WKYVPEHTKSLVNPGYCWRVDVNGADSELTGGPLGDQIFKLEQFHCHWGC
TDSKGSEHTVDGVSYSGELHLVHWNTTKYKSFGEAAAAPDGLAVLGVFLK
AGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLPDVHTYWTYEGSL
TTPPCSESVIWIVFKTPIEVSDDQLNAMRNLNAYDVKEECPCNEFNGKVI
NNFRPPLPLGKRELREIGGH*
BS07058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH1-PA | 270 | CG7820-PA | 1..270 | 1..270 | 1503 | 100 | Plus |
CAH2-PA | 335 | CG6906-PA | 24..282 | 1..264 | 387 | 34.9 | Plus |
CG6074-PA | 311 | CG6074-PA | 22..289 | 2..270 | 341 | 32.7 | Plus |
CG11284-PE | 250 | CG11284-PE | 4..227 | 28..254 | 317 | 34.5 | Plus |
CG11284-PD | 250 | CG11284-PD | 4..227 | 28..254 | 317 | 34.5 | Plus |