Clone Sequence Records
BS07059.5prime Sequence
525 bp (524 high quality bases) assembled on 2006-01-06
> BS07059.5prime
GAAGTTATCAGTCGACATGTCGGAGGACAAACAGTTCATCCGCCGGGATA
AGGGCACCAAGAAAACTTCCACGTCTTTGAAGGAGGTGGACATCTACCGG
GACACCTTCATTCGCTATATGGGCTACAGCAACGAGATTGGCGAGTCCTT
CCGCCCGCTGGTGCCCAAGTCTCTGGTGGCCGCATCCTACGGCATGGCCA
TCGGATACGTCTGCACGGACACTTTTGACAAGGCACTGCGCCTCCAAATG
GAGGGCGCTTCCTCCAGAGAAGTGGCCGTCAAGGGCGGCGACGTCTTCTG
CTGGCAGATGCTGGCCTCCGTCGCCATTCCCGGCCTGGTCATCAATCGGA
TCACCTGGGCCACCAAAACACTGCTGAGCAAAGCGCCTATGCCCGTGCTA
AAGACGGTGCCCACCCTGGTGGGTCTGGCCAGCATACCGCTTATCATCCA
TCCCATTGACAGCATGGTTGACCGCCTGATGGACGCCACCTACCGCAAGA
CGGTGCGGTAGAAGCTTTCTAGACC
BS07059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-PA | 495 | CG7772-RA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-RA | 843 | CG7772-RA | 205..699 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17906652..17906879 | 349..122 | 1140 | 100 | Minus |
X | 23542271 | X | 17906175..17906338 | 511..348 | 820 | 100 | Minus |
X | 23542271 | X | 17906951..17907057 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:07:54 has no hits.
BS07059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:44 Download gff for
BS07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-PA | 1..495 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:32 Download gff for
BS07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-PA | 1..495 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:50 Download gff for
BS07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 198..699 | 7..511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:41:12 Download gff for
BS07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 198..699 | 7..511 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:41:12 Download gff for
BS07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17906175..17906337 | 349..511 | 100 | <- | Minus |
X | 17906653..17906878 | 123..348 | 100 | <- | Minus |
X | 17906952..17907064 | 7..122 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:50 Download gff for
BS07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17800208..17800370 | 349..511 | 100 | <- | Minus |
arm_X | 17800686..17800911 | 123..348 | 100 | <- | Minus |
arm_X | 17800985..17801097 | 7..122 | 96 | | Minus |
BS07059.3prime Sequence
525 bp (524 high quality bases) assembled on 2006-01-06
> BS07059.3prime
ATGGTCTAGAAAGCTTCTACCGCACCGTCTTGCGGTAGGTGGCGTCCATC
AGGCGGTCAACCATGCTGTCAATGGGATGGATGATAAGCGGTATGCTGGC
CAGACCCACCAGGGTGGGCACCGTCTTTAGCACGGGCATAGGCGCTTTGC
TCAGCAGTGTTTTGGTGGCCCAGGTGATCCGATTGATGACCAGGCCGGGA
ATGGCGACGGAGGCCAGCATCTGCCAGCAGAAGACGTCGCCGCCCTTGAC
GGCCACTTCTCTGGAGGAAGCGCCCTCCATTTGGAGGCGCAGTGCCTTGT
CAAAAGTGTCCGTGCAGACGTATCCGATGGCCATGCCGTAGGATGCGGCC
ACCAGAGACTTGGGCACCAGCGGGCGGAAGGACTCGCCAATCTCGTTGCT
GTAGCCCATATAGCGAATGAAGGTGTCCCGGTAGATGTCCACCTCCTTCA
AAGACGTGGAAGTTTTCTTGGTGCCCTTATCCCGGCGGATGAACTGTTTG
TCCTCCGACATGTCGACTGATAACT
BS07059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-PA | 495 | CG7772-RA | 1..495 | 511..17 | 2475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-RA | 843 | CG7772-RA | 205..699 | 511..17 | 2475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17906652..17906879 | 179..406 | 1140 | 100 | Plus |
X | 23542271 | X | 17906175..17906338 | 17..180 | 820 | 100 | Plus |
X | 23542271 | X | 17906951..17907057 | 405..511 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:43:49 has no hits.
BS07059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:43 Download gff for
BS07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-PA | 1..495 | 17..511 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:31 Download gff for
BS07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-PA | 1..495 | 17..511 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:45 Download gff for
BS07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 198..699 | 17..521 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:04 Download gff for
BS07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 198..699 | 17..521 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:04 Download gff for
BS07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17906653..17906878 | 180..405 | 100 | <- | Plus |
X | 17906952..17907064 | 406..521 | 96 | | Plus |
X | 17906175..17906337 | 17..179 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:45 Download gff for
BS07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17800208..17800370 | 17..179 | 100 | <- | Plus |
arm_X | 17800686..17800911 | 180..405 | 100 | <- | Plus |
arm_X | 17800985..17801097 | 406..521 | 96 | | Plus |
BS07059.complete Sequence
527 bp (527 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635710
> BS07059.complete
GAAGTTATCAGTCGACATGTCGGAGGACAAACAGTTCATCCGCCGGGATA
AGGGCACCAAGAAAACTTCCACGTCTTTGAAGGAGGTGGACATCTACCGG
GACACCTTCATTCGCTATATGGGCTACAGCAACGAGATTGGCGAGTCCTT
CCGCCCGCTGGTGCCCAAGTCTCTGGTGGCCGCATCCTACGGCATGGCCA
TCGGATACGTCTGCACGGACACTTTTGACAAGGCACTGCGCCTCCAAATG
GAGGGCGCTTCCTCCAGAGAAGTGGCCGTCAAGGGCGGCGACGTCTTCTG
CTGGCAGATGCTGGCCTCCGTCGCCATTCCCGGCCTGGTCATCAATCGGA
TCACCTGGGCCACCAAAACACTGCTGAGCAAAGCGCCTATGCCCGTGCTA
AAGACGGTGCCCACCCTGGTGGGTCTGGCCAGCATACCGCTTATCATCCA
TCCCATTGACAGCATGGTTGACCGCCTGATGGACGCCACCTACCGCAAGA
CGGTGCGGTAGAAGCTTTCTAGACCAT
BS07059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-RA | 495 | CG7772-PA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-RA | 843 | CG7772-RA | 205..699 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17906652..17906879 | 349..122 | 1140 | 100 | Minus |
X | 23542271 | X | 17906175..17906338 | 511..348 | 820 | 100 | Minus |
X | 23542271 | X | 17906951..17907057 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:11:32 has no hits.
BS07059.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:04 Download gff for
BS07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 1..495 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:38 Download gff for
BS07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 221..722 | 7..511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:29 Download gff for
BS07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 205..699 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:04 Download gff for
BS07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 221..722 | 7..511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:53 Download gff for
BS07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 205..699 | 17..511 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:53 Download gff for
BS07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17906175..17906337 | 349..511 | 100 | <- | Minus |
X | 17906653..17906878 | 123..348 | 100 | <- | Minus |
X | 17906952..17907057 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:29 Download gff for
BS07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17800985..17801090 | 17..122 | 100 | | Minus |
arm_X | 17800686..17800911 | 123..348 | 100 | <- | Minus |
arm_X | 17800208..17800370 | 349..511 | 100 | <- | Minus |
BS07059.pep Sequence
Translation from 16 to 510
> BS07059.pep
MSEDKQFIRRDKGTKKTSTSLKEVDIYRDTFIRYMGYSNEIGESFRPLVP
KSLVAASYGMAIGYVCTDTFDKALRLQMEGASSREVAVKGGDVFCWQMLA
SVAIPGLVINRITWATKTLLSKAPMPVLKTVPTLVGLASIPLIIHPIDSM
VDRLMDATYRKTVR*
BS07059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-PA | 164 | CG7772-PA | 1..164 | 1..164 | 833 | 100 | Plus |