Clone BS07059 Report

Search the DGRC for BS07059

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG7772-RA
Protein status:BS07059.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07059.5prime Sequence

525 bp (524 high quality bases) assembled on 2006-01-06

> BS07059.5prime
GAAGTTATCAGTCGACATGTCGGAGGACAAACAGTTCATCCGCCGGGATA
AGGGCACCAAGAAAACTTCCACGTCTTTGAAGGAGGTGGACATCTACCGG
GACACCTTCATTCGCTATATGGGCTACAGCAACGAGATTGGCGAGTCCTT
CCGCCCGCTGGTGCCCAAGTCTCTGGTGGCCGCATCCTACGGCATGGCCA
TCGGATACGTCTGCACGGACACTTTTGACAAGGCACTGCGCCTCCAAATG
GAGGGCGCTTCCTCCAGAGAAGTGGCCGTCAAGGGCGGCGACGTCTTCTG
CTGGCAGATGCTGGCCTCCGTCGCCATTCCCGGCCTGGTCATCAATCGGA
TCACCTGGGCCACCAAAACACTGCTGAGCAAAGCGCCTATGCCCGTGCTA
AAGACGGTGCCCACCCTGGTGGGTCTGGCCAGCATACCGCTTATCATCCA
TCCCATTGACAGCATGGTTGACCGCCTGATGGACGCCACCTACCGCAAGA
CGGTGCGGTAGAAGCTTTCTAGACC

BS07059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-PA 495 CG7772-RA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-RA 843 CG7772-RA 205..699 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17906652..17906879 349..122 1140 100 Minus
X 23542271 X 17906175..17906338 511..348 820 100 Minus
X 23542271 X 17906951..17907057 123..17 535 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:07:54 has no hits.

BS07059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:44 Download gff for BS07059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-PA 1..495 17..511 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:32 Download gff for BS07059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-PA 1..495 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:50 Download gff for BS07059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 198..699 7..511 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:41:12 Download gff for BS07059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 198..699 7..511 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:41:12 Download gff for BS07059.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17906175..17906337 349..511 100 <- Minus
X 17906653..17906878 123..348 100 <- Minus
X 17906952..17907064 7..122 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:50 Download gff for BS07059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17800208..17800370 349..511 100 <- Minus
arm_X 17800686..17800911 123..348 100 <- Minus
arm_X 17800985..17801097 7..122 96   Minus

BS07059.3prime Sequence

525 bp (524 high quality bases) assembled on 2006-01-06

> BS07059.3prime
ATGGTCTAGAAAGCTTCTACCGCACCGTCTTGCGGTAGGTGGCGTCCATC
AGGCGGTCAACCATGCTGTCAATGGGATGGATGATAAGCGGTATGCTGGC
CAGACCCACCAGGGTGGGCACCGTCTTTAGCACGGGCATAGGCGCTTTGC
TCAGCAGTGTTTTGGTGGCCCAGGTGATCCGATTGATGACCAGGCCGGGA
ATGGCGACGGAGGCCAGCATCTGCCAGCAGAAGACGTCGCCGCCCTTGAC
GGCCACTTCTCTGGAGGAAGCGCCCTCCATTTGGAGGCGCAGTGCCTTGT
CAAAAGTGTCCGTGCAGACGTATCCGATGGCCATGCCGTAGGATGCGGCC
ACCAGAGACTTGGGCACCAGCGGGCGGAAGGACTCGCCAATCTCGTTGCT
GTAGCCCATATAGCGAATGAAGGTGTCCCGGTAGATGTCCACCTCCTTCA
AAGACGTGGAAGTTTTCTTGGTGCCCTTATCCCGGCGGATGAACTGTTTG
TCCTCCGACATGTCGACTGATAACT

BS07059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-PA 495 CG7772-RA 1..495 511..17 2475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-RA 843 CG7772-RA 205..699 511..17 2475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17906652..17906879 179..406 1140 100 Plus
X 23542271 X 17906175..17906338 17..180 820 100 Plus
X 23542271 X 17906951..17907057 405..511 535 100 Plus
Blast to na_te.dros performed on 2015-02-11 21:43:49 has no hits.

BS07059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:43 Download gff for BS07059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-PA 1..495 17..511 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:31 Download gff for BS07059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-PA 1..495 17..511 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:45 Download gff for BS07059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 198..699 17..521 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:04 Download gff for BS07059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 198..699 17..521 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:04 Download gff for BS07059.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17906653..17906878 180..405 100 <- Plus
X 17906952..17907064 406..521 96   Plus
X 17906175..17906337 17..179 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:45 Download gff for BS07059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17800208..17800370 17..179 100 <- Plus
arm_X 17800686..17800911 180..405 100 <- Plus
arm_X 17800985..17801097 406..521 96   Plus

BS07059.complete Sequence

527 bp (527 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635710

> BS07059.complete
GAAGTTATCAGTCGACATGTCGGAGGACAAACAGTTCATCCGCCGGGATA
AGGGCACCAAGAAAACTTCCACGTCTTTGAAGGAGGTGGACATCTACCGG
GACACCTTCATTCGCTATATGGGCTACAGCAACGAGATTGGCGAGTCCTT
CCGCCCGCTGGTGCCCAAGTCTCTGGTGGCCGCATCCTACGGCATGGCCA
TCGGATACGTCTGCACGGACACTTTTGACAAGGCACTGCGCCTCCAAATG
GAGGGCGCTTCCTCCAGAGAAGTGGCCGTCAAGGGCGGCGACGTCTTCTG
CTGGCAGATGCTGGCCTCCGTCGCCATTCCCGGCCTGGTCATCAATCGGA
TCACCTGGGCCACCAAAACACTGCTGAGCAAAGCGCCTATGCCCGTGCTA
AAGACGGTGCCCACCCTGGTGGGTCTGGCCAGCATACCGCTTATCATCCA
TCCCATTGACAGCATGGTTGACCGCCTGATGGACGCCACCTACCGCAAGA
CGGTGCGGTAGAAGCTTTCTAGACCAT

BS07059.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-RA 495 CG7772-PA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-RA 843 CG7772-RA 205..699 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17906652..17906879 349..122 1140 100 Minus
X 23542271 X 17906175..17906338 511..348 820 100 Minus
X 23542271 X 17906951..17907057 123..17 535 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:11:32 has no hits.

BS07059.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:04 Download gff for BS07059.complete
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 1..495 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:38 Download gff for BS07059.complete
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 221..722 7..511 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:29 Download gff for BS07059.complete
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 205..699 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:04 Download gff for BS07059.complete
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 221..722 7..511 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:53 Download gff for BS07059.complete
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 205..699 17..511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:53 Download gff for BS07059.complete
Subject Subject Range Query Range Percent Splice Strand
X 17906175..17906337 349..511 100 <- Minus
X 17906653..17906878 123..348 100 <- Minus
X 17906952..17907057 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:29 Download gff for BS07059.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17800985..17801090 17..122 100   Minus
arm_X 17800686..17800911 123..348 100 <- Minus
arm_X 17800208..17800370 349..511 100 <- Minus

BS07059.pep Sequence

Translation from 16 to 510

> BS07059.pep
MSEDKQFIRRDKGTKKTSTSLKEVDIYRDTFIRYMGYSNEIGESFRPLVP
KSLVAASYGMAIGYVCTDTFDKALRLQMEGASSREVAVKGGDVFCWQMLA
SVAIPGLVINRITWATKTLLSKAPMPVLKTVPTLVGLASIPLIIHPIDSM
VDRLMDATYRKTVR*

BS07059.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-PA 164 CG7772-PA 1..164 1..164 833 100 Plus