Clone Sequence Records
BS07060.3prime Sequence
932 bp (776 high quality bases) assembled on 2006-01-06
> BS07060.3prime
ATGGTCTAGAAAGCTTTTAAGTGGTTTGGAAAACCATCAAACAACAGGAG
GAAACAGTCTTTCTTTCCAGGTACCTTCTGCGCCGCGGATTTGCGGTCTG
GCCGGGAAGATTGAAGCATCCGCGTGGAATGACCATGCGGGCATTGCCCT
TCGCCGGACGCGAACCACCCACAGCCTGCAAACCGGCCAAGTGGGCGGCA
TAGCCATCGCTAAGCACGGTGGCATTCGACTGCAGCTTCTTGCCAACCTT
GCCCACGATGAAGATTTGATCGGTTCGCATGCCAACATTCGTGTAGACAC
TAATGTCCTTGCTGCTGCCGTAGGCGGCAGTAATTGAGATTCCATGGTTC
TGAACCAAATTGTTGAGATAGGCCGTCTTGTGGCCCAATGGATCGGTGGA
CAGGCCGTCGGCGAACGAGATCAGGCCGTGCGGGAAGTTGTGCTGGCTCA
GCCAGGACACCACGCGTTGCTGCTGCATATCCGGTCGTCCGGTGATGTAG
ATGAGCAGGTAGCCCAGCTCCTGCCAGTGGCGGCAAACATCGACAGCTCC
GGCACGCACCTTGGGATCCCTACCCGTCACCGACATCGAAGCGGTGAAGG
AGCCATCAATGCTGAAGACCACGCATTCGGTTAACGGCGGCACCACCGCC
ATATAGCAATCCACCGAGGTGTGATCGCCACGGACCACCATCTTAACCGG
ATATATACCATAGCCAAGGGATACCTGATCCGGAATGCTGTACGAAATGC
GTCCATTCTTGTCCGTCACCTCGGTGCTGAGGAATGTCCACTCGCCCGCC
GGCGGATCCTTCATAATGTGCACATCCACCTTTTCACCGTGCAGCGTGAT
CATGTCCAGGGGTCCGTACATAAATCTCGCATTCAATCGCTGCTCCCTGC
CCTCCTGCACGATTACATCGTTGGCCCGATGA
BS07060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11111-PC | 3780 | rdgB-RC | 2865..3780 | 932..17 | 4580 | 100 | Minus |
CG11111-PD | 3780 | rdgB-RD | 2865..3780 | 932..17 | 4580 | 100 | Minus |
CG11111-PA | 3780 | rdgB-RA | 2865..3780 | 932..17 | 4580 | 100 | Minus |
CG11111-PB | 3753 | rdgB-RB | 2865..3723 | 932..74 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdgB-RA | 6945 | CG11111-RA | 3275..4192 | 932..15 | 4590 | 100 | Minus |
rdgB-RD | 6907 | CG11111-RD | 3237..4154 | 932..15 | 4590 | 100 | Minus |
rdgB-RC | 6965 | CG11111-RC | 3295..4212 | 932..15 | 4590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13773069..13773755 | 932..246 | 3435 | 100 | Minus |
X | 23542271 | X | 13773804..13773981 | 249..72 | 890 | 100 | Minus |
X | 23542271 | X | 13776674..13776735 | 76..15 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:03:39 has no hits.
BS07060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:45 Download gff for
BS07060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-PA | 2866..3780 | 17..931 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:34 Download gff for
BS07060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11111-PA | 2866..3780 | 17..931 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:02:04 Download gff for
BS07060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-RC | 3296..4212 | 15..931 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:45 Download gff for
BS07060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-RC | 3296..4212 | 15..931 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:45 Download gff for
BS07060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13773070..13773753 | 248..931 | 100 | -> | Minus |
X | 13773806..13773978 | 75..247 | 100 | -> | Minus |
X | 13776676..13776735 | 15..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:02:04 Download gff for
BS07060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13667103..13667786 | 248..931 | 100 | -> | Minus |
arm_X | 13667839..13668011 | 75..247 | 100 | -> | Minus |
arm_X | 13670709..13670768 | 15..74 | 100 | | Minus |
BS07060.5prime Sequence
874 bp (806 high quality bases) assembled on 2006-01-06
> BS07060.5prime
GAAGTTATCAGTCGACATGCTGATCAAGGAGTACCGCATTCCGCTGCCCC
TCACCGTCGAGGAGTACCGCATCGCCCAGCTCTACATGATTGCGAAAAAG
AGTCGCGAGGAGAGCCATGGCGAGGGCAGTGGCGTTGAGATAATCATCAA
TGAGCCGTACAAGGATGGACCCGGCGGTAATGGTCAATACACAAAGAAGA
TCTATCACGTGGGCAATCATCTGCCTGGCTGGATTAAAAGTCTCTTGCCG
AAAAGCGCTTTAACCGTGGAGGAGGAGGCATGGAATGCCTATCCGTATAC
CAGGACTCGCTACACCTGTCCGTTTGTGGAGAAATTCTCGCTGGATATTG
AGACATACTATTATCCGGACAATGGCTATCAGGACAATGTCTTCCAGCTG
TCCGGAAGCGATTTGCGTAATCGTATCGTAGACGTAATTGACATTGTCAA
GGATCAGCTGTGGGGCGGTGACTATGTGAAGGAGGAGGATCCCAAGCACT
TTGTGTCGGACAAGACGGGCCGTGGACCCTTGGCCGAGGATTGGCTGGAG
GAGTATTGGCGCGAAGTGAAGGGCAAAAAGCAACCGACACCGCGCAACAT
GTCCCTGATGACCGCCTACAAGATCTGCCGCGTGGAGTTCCGCTACTGGG
GCATGCAGACAAAGCTGGAGAAGTTCATCCACGATGTGGCGCTGCGCAAG
ATGATGCTGCGGGCCCATCGGCAGGCGTGGGCATGGCAGGACGAGTGGTT
CGGCTTGACCATCGAGGATATACGCGAGCTGGAGCGACAGACGCAACTGG
CGCTGGCCAAGAAAATGGGCGGCGGCGAGGAGTGCAGCGACGACAGCGTC
TCGGAGCCGTACGTCAGCACGGCG
BS07060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11111-PC | 3780 | rdgB-RC | 1..858 | 17..874 | 4290 | 100 | Plus |
CG11111-PD | 3780 | rdgB-RD | 1..858 | 17..874 | 4290 | 100 | Plus |
CG11111-PB | 3753 | rdgB-RB | 1..858 | 17..874 | 4290 | 100 | Plus |
CG11111-PA | 3780 | rdgB-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdgB-RJ | 4506 | CG11111-RJ | 482..1345 | 11..874 | 4305 | 99.9 | Plus |
rdgB-RI | 7435 | CG11111-RI | 448..1311 | 11..874 | 4305 | 99.9 | Plus |
rdgB-RK | 4352 | CG11111-RK | 367..1230 | 11..874 | 4305 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13769142..13769554 | 430..842 | 2065 | 100 | Plus |
X | 23542271 | X | 13768869..13769060 | 240..431 | 960 | 100 | Plus |
X | 23542271 | X | 13768658..13768805 | 94..241 | 740 | 100 | Plus |
X | 23542271 | X | 13768074..13768157 | 11..94 | 405 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:18:21 has no hits.
BS07060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:46 Download gff for
BS07060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:36 Download gff for
BS07060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11111-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:26 Download gff for
BS07060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-RK | 367..1230 | 11..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:24:12 Download gff for
BS07060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-RK | 367..1230 | 11..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:24:12 Download gff for
BS07060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13768659..13768803 | 95..239 | 100 | -> | Plus |
X | 13768869..13769060 | 240..431 | 100 | -> | Plus |
X | 13768074..13768157 | 11..94 | 98 | -> | Plus |
X | 13769144..13769554 | 432..842 | 100 | -> | Plus |
X | 13769811..13769842 | 843..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:26 Download gff for
BS07060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13662107..13662190 | 11..94 | 98 | -> | Plus |
arm_X | 13662692..13662836 | 95..239 | 100 | -> | Plus |
arm_X | 13662902..13663093 | 240..431 | 100 | -> | Plus |
arm_X | 13663177..13663587 | 432..842 | 100 | -> | Plus |
arm_X | 13663844..13663875 | 843..874 | 100 | | Plus |
BS07060.complete Sequence
3812 bp assembled on 2008-01-02
GenBank Submission: FJ635711
> BS07060.complete
GAAGTTATCAGTCGACATGCTGATCAAGGAGTACCGCATTCCGCTGCCCC
TCACCGTCGAGGAGTACCGCATCGCCCAGCTCTACATGATTGCGAAAAAG
AGTCGCGAGGAGAGCCATGGCGAGGGCAGTGGCGTTGAGATAATCATCAA
TGAGCCGTACAAGGATGGACCCGGCGGTAATGGTCAATACACAAAGAAGA
TCTATCACGTGGGCAATCATCTGCCTGGCTGGATTAAAAGTCTCTTGCCG
AAAAGCGCTTTAACCGTGGAGGAGGAGGCATGGAATGCCTATCCGTATAC
CAGGACTCGCTACACCTGTCCGTTTGTGGAGAAATTCTCGCTGGATATTG
AGACATACTATTATCCGGACAATGGCTATCAGGACAATGTCTTCCAGCTG
TCCGGAAGCGATTTGCGTAATCGTATCGTAGACGTAATTGACATTGTCAA
GGATCAGCTGTGGGGCGGTGACTATGTGAAGGAGGAGGATCCCAAGCACT
TTGTGTCGGACAAGACGGGCCGTGGACCCTTGGCCGAGGATTGGCTGGAG
GAGTATTGGCGCGAAGTGAAGGGCAAAAAGCAACCGACACCGCGCAACAT
GTCCCTGATGACCGCCTACAAGATCTGCCGCGTGGAGTTCCGCTACTGGG
GCATGCAGACAAAGCTGGAGAAGTTCATCCACGATGTGGCGCTGCGCAAG
ATGATGCTGCGGGCCCATCGGCAGGCGTGGGCATGGCAGGACGAGTGGTT
CGGCTTGACCATCGAGGATATACGCGAGCTGGAGCGACAGACGCAACTGG
CGCTGGCCAAGAAAATGGGCGGCGGCGAGGAGTGCAGCGACGACAGCGTC
TCGGAGCCGTACGTCAGCACGGCGGCCACCGCCGCCTCCACAACGGGCAG
CGAGCGAAAGAAGTCCGCTCCGGCTGTGCCGCCTATTGTCACCCAGCAGC
CGCCGAGCGCCGAGGCCAGTTCGGATGAGGAGGGCGAGGAGGAGGAGGAT
GACGACGAGGACGAGAACGATGCCATTGGCACGGGCGTGGATCTGTCAGC
CAACCAAGGCGGATCCGCGCAGCGCTCGCGCTCCCAAAGTATTCAGATGG
CCCAGAAGGGCAAGTTCGGGTCAAAGGGTGCCCTTCACTCGCCGGTGGGA
TCTGCCCATAGCTTCGATCTCCAGGTGGCTAACTGGCGTATGGAGCGATT
GGAAGTGGACTCCAAATCCAATTCGGATGAGGAATTCTTTGATTGCCTGG
ACACCAATGAGACGAACTCGCTGGCCAAGTGGAGCTCGCTGGAGCTGCTT
GGCGAGGGCGACGACAGTCCGCCGCCACATGGCGGACCCTCTAGTGCAGC
ATCGGTGGGTGGGCGTGGCAACTCGCGGCAAGAGGACAGCATATTCAATC
AGGACTTTCTGATGCGCGTGGCCTCGGAGCGCGGCAACAAGCGGCAGTTA
CGTTCCTCGGCCAGCGTGGATCGCAGTCACGATTCATCGCCGCCGGGATC
GCCGAGTACACCGTCGTGTCCCACAACCATTCTGATCCTGGTTGTCCATG
CGGGCAGCGTTTTGGATGCGGCCAGCGAGCTGACCGCCAAGAAATCCGAT
GTGACCACATTCCGTGGCTCCTTCGAGGCGGTTATGCGACAGCACTATCC
CAGCCTCCTCACCCATGTGACCATCAAGATGGTGCCGTGCCCCTCAATAT
GCACCGACGCCCTGGGCATTCTCTCCAGCCTGAGTCCGTACTCCTTTGAT
GCGTCGCCCTCGGCGGCGGATATACCGAATATAGCCGATGTCCCCATTGG
AGCTATACCACTACTATCTGTGGCATCGCCAGAATTCCACGAGACGGTCA
ACAAGACGGTTGCCGCTGCCAATATTGTCTACCATGAGTTTTTGAAATCG
GAGGAGGGTCACGGATTCTCCGGCCAGATTGTCATGCTGGGCGATTCGAT
GGGTTCGCTGCTGGCGTACGAGGCTCTCTGCCGATCGAATGGCAGCCAGC
CGGGCACGGCTTCGGGTGCCTCGAATTCCGGCGGAGATGCGGCCACAAAT
ATAAATACCCACAATCCGTTGAGCCCACGTAATTCGCGATTGGACGATGA
CGAGCGTTTCATCGAAGCCGATCTGGATGCCAAGCGTTTGCTGGTTGCCC
CATCGCCACGTAGACGCCGTTCCAGCTCATCCAGCGATTCGCGTGCCACC
AAATTGGACTTTGAGGTCTGTGACTTCTTCATGTTCGGATCGCCGCTATC
TGTGGTGCTGGCTGCAAGGAAACTTCACGATGCCAAGGCCGCCCTGCCGC
GGCCCAACTGCCACCAGGTCTACAATCTGTTCCATCCAACCGATCCGATC
GCCTCGCGCCTGGAGCCGCTTCTGAGCGCCCGGTTTTCTATATTGGCGCC
AGTCAATGTCCCACGGTACGCCAAGTATCCGCTGGGTAATGGACAGCCAT
TGCATTTATTGGAGGTCATTCAATCGCATCCGCAGCACTTTAACGATGGC
AATAACCTATTGGCTGGTCGCCGTTTGTCGGACGCATCCATGCAGAGCAC
GATATCGGGTCTGATTGAGAATGTCTCGCTTAGTACGATCCATGCCCTGC
AAAACAAATGGTGGGGCACAAAGCGCTTGGATTACGCATTATATTGCCCG
GAGGGATTGAGTAATTTCCCTGCTCACGCCTTGCCGCACCTCTTCCATGC
CAGCTACTGGGAGAGTCCGGATGTGATTGCCTTTATTCTACGGCAGATTG
GCAAATTCGAGGGCATACCCTTTGTGGGCTCAAACGATGACAAGGACAAT
GCCTCCTTCCATCCCGGACAGCCGAGGGAGAAGTGGATTAAGAAACGGAC
CTCGGTTAAGCTGAAAAATGTAGCCGCCAATCATCGGGCCAACGATGTAA
TCGTGCAGGAGGGCAGGGAGCAGCGATTGAATGCGAGATTTATGTACGGA
CCCCTGGACATGATCACGCTGCACGGTGAAAAGGTGGATGTGCACATTAT
GAAGGATCCGCCGGCGGGCGAGTGGACATTCCTCAGCACCGAGGTGACGG
ACAAGAATGGACGCATTTCGTACAGCATTCCGGATCAGGTATCCCTTGGC
TATGGTATATATCCGGTTAAGATGGTGGTCCGTGGCGATCACACCTCGGT
GGATTGCTATATGGCGGTGGTGCCGCCGTTAACCGAATGCGTGGTCTTCA
GCATTGATGGCTCCTTCACCGCTTCGATGTCGGTGACGGGTAGGGATCCC
AAGGTGCGTGCCGGAGCTGTCGATGTTTGCCGCCACTGGCAGGAGCTGGG
CTACCTGCTCATCTACATCACCGGACGACCGGATATGCAGCAGCAACGCG
TGGTGTCCTGGCTGAGCCAGCACAACTTCCCGCACGGCCTGATCTCGTTC
GCCGACGGCCTGTCCACCGATCCATTGGGCCACAAGACGGCCTATCTCAA
CAATTTGGTTCAGAACCATGGAATCTCAATTACTGCCGCCTACGGCAGCA
GCAAGGACATTAGTGTCTACACGAATGTTGGCATGCGAACCGATCAAATC
TTCATCGTGGGCAAGGTTGGCAAGAAGCTGCAGTCGAATGCCACCGTGCT
TAGCGATGGCTATGCCGCCCACTTGGCCGGTTTGCAGGCTGTGGGTGGTT
CGCGTCCGGCGAAGGGCAATGCCCGCATGGTCATTCCACGCGGATGCTTC
AATCTTCCCGGCCAGACCGCAAATCCGCGGCGCAGAAGGTACCTGGAAAG
AAAGACTGTTTCCTCCTGTTGTTTGATGGTTTTCCAAACCACTTAAAAGC
TTTCTAGACCAT
BS07060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdgB-RA | 3780 | CG11111-PA | 1..3780 | 17..3796 | 18900 | 100 | Plus |
rdgB-RD | 3780 | CG11111-PD | 1..3780 | 17..3796 | 18900 | 100 | Plus |
rdgB-RC | 3780 | CG11111-PC | 1..3780 | 17..3796 | 18900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdgB-RA | 6945 | CG11111-RA | 405..4192 | 11..3798 | 18925 | 100 | Plus |
rdgB-RD | 6907 | CG11111-RD | 367..4154 | 11..3798 | 18925 | 100 | Plus |
rdgB-RC | 6965 | CG11111-RC | 425..4212 | 11..3798 | 18925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13771276..13772485 | 1250..2459 | 6050 | 100 | Plus |
X | 23542271 | X | 13772786..13773755 | 2598..3567 | 4850 | 100 | Plus |
X | 23542271 | X | 13769142..13769554 | 430..842 | 2065 | 100 | Plus |
X | 23542271 | X | 13769810..13770145 | 842..1177 | 1680 | 100 | Plus |
X | 23542271 | X | 13768869..13769060 | 240..431 | 960 | 100 | Plus |
X | 23542271 | X | 13773804..13773981 | 3564..3741 | 890 | 100 | Plus |
X | 23542271 | X | 13768658..13768805 | 94..241 | 740 | 100 | Plus |
X | 23542271 | X | 13772558..13772695 | 2460..2597 | 690 | 100 | Plus |
X | 23542271 | X | 13768074..13768157 | 11..94 | 405 | 98.8 | Plus |
X | 23542271 | X | 13771125..13771203 | 1172..1250 | 395 | 100 | Plus |
X | 23542271 | X | 13776674..13776735 | 3737..3798 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:41:16 has no hits.
BS07060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:38 Download gff for
BS07060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-RA | 1..3780 | 17..3796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:23 Download gff for
BS07060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-RA | 393..4170 | 17..3794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:08 Download gff for
BS07060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-RC | 431..4208 | 17..3794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:38 Download gff for
BS07060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-RA | 387..4174 | 11..3798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:44 Download gff for
BS07060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgB-RC | 431..4208 | 17..3794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:44 Download gff for
BS07060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13768869..13769060 | 240..431 | 100 | -> | Plus |
X | 13768080..13768157 | 17..94 | 100 | -> | Plus |
X | 13768659..13768803 | 95..239 | 100 | -> | Plus |
X | 13769144..13769554 | 432..842 | 100 | -> | Plus |
X | 13769811..13770142 | 843..1174 | 100 | -> | Plus |
X | 13771128..13771203 | 1175..1250 | 100 | -> | Plus |
X | 13771277..13772485 | 1251..2459 | 100 | -> | Plus |
X | 13772558..13772695 | 2460..2597 | 100 | -> | Plus |
X | 13772786..13773753 | 2598..3565 | 100 | -> | Plus |
X | 13773806..13773978 | 3566..3738 | 100 | -> | Plus |
X | 13776676..13776731 | 3739..3794 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:08 Download gff for
BS07060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13662113..13662190 | 17..94 | 100 | -> | Plus |
arm_X | 13662692..13662836 | 95..239 | 100 | -> | Plus |
arm_X | 13662902..13663093 | 240..431 | 100 | -> | Plus |
arm_X | 13663177..13663587 | 432..842 | 100 | -> | Plus |
arm_X | 13663844..13664175 | 843..1174 | 100 | -> | Plus |
arm_X | 13665161..13665236 | 1175..1250 | 100 | -> | Plus |
arm_X | 13665310..13666518 | 1251..2459 | 100 | -> | Plus |
arm_X | 13666591..13666728 | 2460..2597 | 100 | -> | Plus |
arm_X | 13666819..13667786 | 2598..3565 | 100 | -> | Plus |
arm_X | 13667839..13668011 | 3566..3738 | 100 | -> | Plus |
arm_X | 13670709..13670764 | 3739..3794 | 100 | | Plus |
BS07060.pep Sequence
Translation from 16 to 3795
> BS07060.pep
MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIIINEPYKD
GPGGNGQYTKKIYHVGNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYT
CPFVEKFSLDIETYYYPDNGYQDNVFQLSGSDLRNRIVDVIDIVKDQLWG
GDYVKEEDPKHFVSDKTGRGPLAEDWLEEYWREVKGKKQPTPRNMSLMTA
YKICRVEFRYWGMQTKLEKFIHDVALRKMMLRAHRQAWAWQDEWFGLTIE
DIRELERQTQLALAKKMGGGEECSDDSVSEPYVSTAATAASTTGSERKKS
APAVPPIVTQQPPSAEASSDEEGEEEEDDDEDENDAIGTGVDLSANQGGS
AQRSRSQSIQMAQKGKFGSKGALHSPVGSAHSFDLQVANWRMERLEVDSK
SNSDEEFFDCLDTNETNSLAKWSSLELLGEGDDSPPPHGGPSSAASVGGR
GNSRQEDSIFNQDFLMRVASERGNKRQLRSSASVDRSHDSSPPGSPSTPS
CPTTILILVVHAGSVLDAASELTAKKSDVTTFRGSFEAVMRQHYPSLLTH
VTIKMVPCPSICTDALGILSSLSPYSFDASPSAADIPNIADVPIGAIPLL
SVASPEFHETVNKTVAAANIVYHEFLKSEEGHGFSGQIVMLGDSMGSLLA
YEALCRSNGSQPGTASGASNSGGDAATNINTHNPLSPRNSRLDDDERFIE
ADLDAKRLLVAPSPRRRRSSSSSDSRATKLDFEVCDFFMFGSPLSVVLAA
RKLHDAKAALPRPNCHQVYNLFHPTDPIASRLEPLLSARFSILAPVNVPR
YAKYPLGNGQPLHLLEVIQSHPQHFNDGNNLLAGRRLSDASMQSTISGLI
ENVSLSTIHALQNKWWGTKRLDYALYCPEGLSNFPAHALPHLFHASYWES
PDVIAFILRQIGKFEGIPFVGSNDDKDNASFHPGQPREKWIKKRTSVKLK
NVAANHRANDVIVQEGREQRLNARFMYGPLDMITLHGEKVDVHIMKDPPA
GEWTFLSTEVTDKNGRISYSIPDQVSLGYGIYPVKMVVRGDHTSVDCYMA
VVPPLTECVVFSIDGSFTASMSVTGRDPKVRAGAVDVCRHWQELGYLLIY
ITGRPDMQQQRVVSWLSQHNFPHGLISFADGLSTDPLGHKTAYLNNLVQN
HGISITAAYGSSKDISVYTNVGMRTDQIFIVGKVGKKLQSNATVLSDGYA
AHLAGLQAVGGSRPAKGNARMVIPRGCFNLPGQTANPRRRRYLERKTVSS
CCLMVFQTT*
BS07060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdgB-PA | 1259 | CG11111-PA | 1..1259 | 1..1259 | 6617 | 100 | Plus |
rdgB-PD | 1259 | CG11111-PD | 1..1259 | 1..1259 | 6617 | 100 | Plus |
rdgB-PC | 1259 | CG11111-PC | 1..1259 | 1..1259 | 6617 | 100 | Plus |
rdgB-PF | 1250 | CG11111-PF | 1..1247 | 1..1247 | 6528 | 99.7 | Plus |
rdgB-PB | 1250 | CG11111-PB | 1..1247 | 1..1247 | 6528 | 99.7 | Plus |